Wall clock time and date at job start Tue Mar 31 2020 19:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29577 * 1 3 3 Si 1.86803 * 119.99867 * 2 1 4 4 H 1.48505 * 109.47285 * 268.99218 * 3 2 1 5 5 H 1.48499 * 109.47037 * 28.99414 * 3 2 1 6 6 H 1.48498 * 109.47136 * 148.99263 * 3 2 1 7 7 C 1.46385 * 120.00255 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99914 * 344.55795 * 7 2 1 9 9 C 1.41184 * 120.00191 * 164.55582 * 7 2 1 10 10 C 1.41374 * 121.04098 * 332.42741 * 9 7 2 11 11 C 1.37840 * 118.97529 * 180.02562 * 10 9 7 12 12 N 1.31888 * 121.15840 * 359.97400 * 11 10 9 13 13 C 1.32277 * 122.33614 * 359.97438 * 12 11 10 14 14 N 1.39341 * 119.56383 * 180.02562 * 13 12 11 15 15 C 1.34779 * 120.00011 * 5.46814 * 14 13 12 16 16 O 1.21648 * 120.00287 * 4.98281 * 15 14 13 17 17 C 1.46983 * 120.00135 * 184.97904 * 15 14 13 18 18 N 1.36757 * 126.90788 * 0.02562 * 17 15 14 19 19 H 0.96998 * 125.18453 * 359.97438 * 18 17 15 20 20 N 1.28428 * 109.62725 * 180.02562 * 18 17 15 21 21 C 1.30841 * 110.98598 * 0.02562 * 20 18 17 22 22 N 1.48020 * 126.06221 * 180.02562 * 21 20 18 23 23 O 1.31703 * 119.99839 * 359.96825 * 22 21 20 24 24 O 1.31693 * 120.00398 * 179.97438 * 22 21 20 25 25 C 1.38572 * 126.90693 * 179.71198 * 17 15 14 26 26 Cl 1.73592 * 127.34109 * 0.02562 * 25 17 15 27 27 C 1.38931 * 120.86833 * 0.02562 * 13 12 11 28 28 H 0.97001 * 119.99848 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.51419 * 0.03571 * 10 9 7 30 30 H 1.08004 * 119.41939 * 179.97438 * 11 10 9 31 31 H 0.96993 * 120.00457 * 185.47231 * 14 13 12 32 32 H 1.07993 * 120.62331 * 179.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2958 0.0000 0.0000 3 14 2.2297 1.6178 0.0000 4 1 2.4986 2.0342 -1.3999 5 1 1.4167 2.6587 0.6786 6 1 3.5165 1.4465 0.7212 7 6 2.0278 -1.2677 -0.0006 8 1 1.5170 -2.1863 0.2481 9 6 3.4014 -1.2896 -0.3262 10 6 3.9645 -0.3113 -1.1773 11 6 5.3106 -0.3735 -1.4674 12 7 6.0735 -1.3251 -0.9654 13 6 5.5984 -2.2639 -0.1638 14 7 6.4569 -3.2419 0.3342 15 6 7.7800 -3.1653 0.0891 16 8 8.2367 -2.1969 -0.4882 17 6 8.6712 -4.2520 0.5196 18 7 8.3124 -5.3979 1.1741 19 1 7.4084 -5.6319 1.4366 20 7 9.3550 -6.1163 1.3893 21 6 10.4294 -5.5352 0.9204 22 7 11.8083 -6.0692 0.9869 23 8 12.0370 -7.2328 1.5599 24 8 12.8066 -5.3807 0.4732 25 6 10.0432 -4.3241 0.3384 26 17 11.0653 -3.1566 -0.4397 27 6 4.2546 -2.2875 0.1883 28 1 -0.4850 0.8401 0.0004 29 1 3.3496 0.4729 -1.5936 30 1 5.7482 0.3700 -2.1171 31 1 6.1024 -3.9778 0.8572 32 1 3.8708 -3.0560 0.8427 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001294624886.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:09 Heat of formation + Delta-G solvation = 122.120972 kcal Electronic energy + Delta-G solvation = -24969.021939 eV Core-core repulsion = 20770.221827 eV Total energy + Delta-G solvation = -4198.800112 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 337.041 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -43.98630 -40.13447 -39.12850 -38.21481 -37.17066 -34.97116 -34.78671 -33.94969 -33.06863 -31.99673 -31.58361 -29.20269 -27.73337 -26.04709 -24.86312 -22.52561 -22.28644 -22.09434 -20.88794 -19.50700 -18.59766 -18.49217 -18.12789 -17.46170 -16.59450 -16.36612 -15.91884 -15.85057 -15.46214 -14.99597 -14.72448 -14.47600 -14.30684 -13.28798 -13.04915 -12.91004 -12.76896 -12.69915 -11.86571 -11.79994 -11.72637 -11.45660 -11.12555 -11.04208 -11.04020 -10.96131 -10.81946 -10.41439 -10.19415 -10.02016 -9.81398 -9.57999 -8.55779 -8.15225 -7.54722 -7.37735 -4.91169 -1.00312 0.12952 0.15541 1.12946 1.26381 1.96182 2.10563 2.44716 2.58502 2.87983 2.96499 2.99814 3.12178 3.29489 3.59994 3.68569 4.02026 4.26399 4.31419 5.18042 5.21874 5.39206 5.52557 5.92914 6.07718 6.10902 6.27096 6.35087 6.52811 6.57586 6.82798 6.95329 7.17998 7.47311 7.62239 7.83731 8.03358 8.26764 8.38335 9.21411 9.57913 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.029809 B = 0.002536 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.084344 B =11038.099731 C =11796.315671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.084 3.916 3 Si 0.925 3.075 4 H -0.262 1.262 5 H -0.288 1.288 6 H -0.243 1.243 7 C -0.437 4.437 8 H 0.094 0.906 9 C 0.124 3.876 10 C -0.307 4.307 11 C 0.143 3.857 12 N -0.566 5.566 13 C 0.357 3.643 14 N -0.649 5.649 15 C 0.570 3.430 16 O -0.421 6.421 17 C 0.009 3.991 18 N -0.318 5.318 19 H 0.471 0.529 20 N -0.170 5.170 21 C 0.126 3.874 22 N 0.013 4.987 23 O -0.134 6.134 24 O -0.127 6.127 25 C -0.036 4.036 26 Cl 0.057 6.943 27 C -0.295 4.295 28 H 0.296 0.704 29 H 0.110 0.890 30 H 0.130 0.870 31 H 0.404 0.596 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.696 -7.093 2.837 13.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.144 4.144 3 Si 0.751 3.249 4 H -0.188 1.188 5 H -0.215 1.215 6 H -0.166 1.166 7 C -0.466 4.466 8 H 0.112 0.888 9 C 0.116 3.884 10 C -0.330 4.330 11 C -0.009 4.009 12 N -0.286 5.286 13 C 0.132 3.868 14 N -0.296 5.296 15 C 0.350 3.650 16 O -0.284 6.284 17 C -0.120 4.120 18 N -0.046 5.046 19 H 0.322 0.678 20 N -0.015 5.015 21 C -0.114 4.114 22 N 0.498 4.502 23 O -0.330 6.330 24 O -0.321 6.321 25 C -0.075 4.075 26 Cl 0.087 6.913 27 C -0.321 4.321 28 H 0.108 0.892 29 H 0.128 0.872 30 H 0.148 0.852 31 H 0.238 0.762 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 10.945 -6.856 2.583 13.171 hybrid contribution -0.837 0.583 0.280 1.058 sum 10.108 -6.273 2.863 12.235 Atomic orbital electron populations 1.69016 1.09176 1.31780 1.28804 1.27707 0.94541 1.02487 0.89655 0.86147 0.80768 0.78131 0.79861 1.18756 1.21545 1.16628 1.20700 0.91477 0.94580 1.39800 0.88814 1.17512 0.92746 0.89776 0.88342 1.22072 0.96710 1.05940 1.08293 1.21773 0.90051 0.93848 0.95239 1.66982 1.38661 1.06369 1.16595 1.17852 0.86341 0.88969 0.93601 1.43143 1.05556 1.27257 1.53625 1.16629 0.81758 0.84722 0.81892 1.91055 1.73581 1.28283 1.35501 1.22090 0.93995 0.91786 1.04176 1.43664 1.09441 1.12414 1.39089 0.67810 1.73032 0.92381 1.19431 1.16682 1.20796 0.84298 0.94825 1.11461 1.48927 1.00643 1.01823 0.98825 1.96339 1.91698 1.02235 1.42761 1.96374 1.30681 1.57902 1.47124 1.20848 0.91097 0.93072 1.02514 1.98478 1.63251 1.53193 1.76415 1.21147 0.91088 1.07964 1.11940 0.89201 0.87244 0.85217 0.76195 0.87389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.86 13.89 55.98 0.78 -17.09 16 2 C 0.08 1.94 5.63 -15.23 -0.09 1.86 16 3 Si 0.93 18.62 24.61 -169.99 -4.18 14.44 16 4 H -0.26 -5.09 6.50 56.52 0.37 -4.73 16 5 H -0.29 -5.55 7.11 56.52 0.40 -5.14 16 6 H -0.24 -5.12 6.96 56.52 0.39 -4.73 16 7 C -0.44 -10.45 9.94 -35.19 -0.35 -10.80 16 8 H 0.09 2.32 8.06 -52.49 -0.42 1.89 16 9 C 0.12 2.82 5.27 -106.54 -0.56 2.26 16 10 C -0.31 -6.77 7.46 -38.53 -0.29 -7.06 16 11 C 0.14 3.02 11.15 -17.67 -0.20 2.82 16 12 N -0.57 -12.14 7.85 -12.49 -0.10 -12.24 16 13 C 0.36 6.82 7.41 -154.87 -1.15 5.67 16 14 N -0.65 -8.87 5.38 -12.57 -0.07 -8.93 16 15 C 0.57 8.10 7.75 -12.72 -0.10 8.00 16 16 O -0.42 -7.70 14.12 5.23 0.07 -7.63 16 17 C 0.01 0.10 7.16 -82.00 -0.59 -0.49 16 18 N -0.32 -2.34 6.86 33.50 0.23 -2.11 16 19 H 0.47 1.34 8.23 -190.47 -1.57 -0.23 16 20 N -0.17 -1.69 12.12 33.00 0.40 -1.29 16 21 C 0.13 1.51 8.23 -146.43 -1.21 0.31 16 22 N 0.01 0.18 4.98 33.01 0.16 0.34 16 23 O -0.13 -1.85 19.96 -31.57 -0.63 -2.48 16 24 O -0.13 -1.75 18.55 -31.56 -0.59 -2.34 16 25 C -0.04 -0.44 6.83 -38.87 -0.27 -0.71 16 26 Cl 0.06 0.75 26.78 -51.86 -1.39 -0.64 16 27 C -0.30 -5.92 9.76 -38.28 -0.37 -6.29 16 28 H 0.30 6.13 8.27 -40.82 -0.34 5.79 16 29 H 0.11 2.36 4.27 -52.49 -0.22 2.14 16 30 H 0.13 2.39 8.06 -52.48 -0.42 1.97 16 31 H 0.40 3.46 7.89 -40.82 -0.32 3.14 16 32 H 0.11 1.89 8.06 -52.49 -0.42 1.46 16 LS Contribution 315.11 15.07 4.75 4.75 Total: -1.00 -29.82 315.11 -8.28 -38.10 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -2.56 Total: 1.57 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -5.16 Total: -4.44 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 1.41 Total: -41.32 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -1.14 Total: -12.44 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -4.18 Total: 14.44 kcal Atomic # 17 Polarization: 0.75 SS G_CDS: -1.39 Total: -0.64 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.82 -8.28 -38.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001294624886.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.216 kcal (2) G-P(sol) polarization free energy of solvation -29.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds