Wall clock time and date at job start Tue Mar 31 2020 19:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29577 * 1 3 3 Si 1.86803 * 119.99867 * 2 1 4 4 H 1.48505 * 109.47285 * 268.99218 * 3 2 1 5 5 H 1.48499 * 109.47037 * 28.99414 * 3 2 1 6 6 H 1.48498 * 109.47136 * 148.99263 * 3 2 1 7 7 C 1.46385 * 120.00255 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99914 * 344.55795 * 7 2 1 9 9 C 1.41184 * 120.00191 * 164.55582 * 7 2 1 10 10 C 1.41374 * 121.04098 * 332.42741 * 9 7 2 11 11 C 1.37840 * 118.97529 * 180.02562 * 10 9 7 12 12 N 1.31888 * 121.15840 * 359.97400 * 11 10 9 13 13 C 1.32277 * 122.33614 * 359.97438 * 12 11 10 14 14 N 1.39341 * 119.56383 * 180.02562 * 13 12 11 15 15 C 1.34779 * 120.00011 * 5.46814 * 14 13 12 16 16 O 1.21648 * 120.00287 * 4.98281 * 15 14 13 17 17 C 1.46983 * 120.00135 * 184.97904 * 15 14 13 18 18 N 1.36757 * 126.90788 * 0.02562 * 17 15 14 19 19 H 0.96998 * 125.18453 * 359.97438 * 18 17 15 20 20 N 1.28428 * 109.62725 * 180.02562 * 18 17 15 21 21 C 1.30841 * 110.98598 * 0.02562 * 20 18 17 22 22 N 1.48020 * 126.06221 * 180.02562 * 21 20 18 23 23 O 1.31703 * 119.99839 * 359.96825 * 22 21 20 24 24 O 1.31693 * 120.00398 * 179.97438 * 22 21 20 25 25 C 1.38572 * 126.90693 * 179.71198 * 17 15 14 26 26 Cl 1.73592 * 127.34109 * 0.02562 * 25 17 15 27 27 C 1.38931 * 120.86833 * 0.02562 * 13 12 11 28 28 H 0.97001 * 119.99848 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.51419 * 0.03571 * 10 9 7 30 30 H 1.08004 * 119.41939 * 179.97438 * 11 10 9 31 31 H 0.96993 * 120.00457 * 185.47231 * 14 13 12 32 32 H 1.07993 * 120.62331 * 179.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2958 0.0000 0.0000 3 14 2.2297 1.6178 0.0000 4 1 2.4986 2.0342 -1.3999 5 1 1.4167 2.6587 0.6786 6 1 3.5165 1.4465 0.7212 7 6 2.0278 -1.2677 -0.0006 8 1 1.5170 -2.1863 0.2481 9 6 3.4014 -1.2896 -0.3262 10 6 3.9645 -0.3113 -1.1773 11 6 5.3106 -0.3735 -1.4674 12 7 6.0735 -1.3251 -0.9654 13 6 5.5984 -2.2639 -0.1638 14 7 6.4569 -3.2419 0.3342 15 6 7.7800 -3.1653 0.0891 16 8 8.2367 -2.1969 -0.4882 17 6 8.6712 -4.2520 0.5196 18 7 8.3124 -5.3979 1.1741 19 1 7.4084 -5.6319 1.4366 20 7 9.3550 -6.1163 1.3893 21 6 10.4294 -5.5352 0.9204 22 7 11.8083 -6.0692 0.9869 23 8 12.0370 -7.2328 1.5599 24 8 12.8066 -5.3807 0.4732 25 6 10.0432 -4.3241 0.3384 26 17 11.0653 -3.1566 -0.4397 27 6 4.2546 -2.2875 0.1883 28 1 -0.4850 0.8401 0.0004 29 1 3.3496 0.4729 -1.5936 30 1 5.7482 0.3700 -2.1171 31 1 6.1024 -3.9778 0.8572 32 1 3.8708 -3.0560 0.8427 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001294624886.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:09 Heat of formation + Delta-G solvation = 102.786901 kcal Electronic energy + Delta-G solvation = -24969.860327 eV Core-core repulsion = 20770.221827 eV Total energy + Delta-G solvation = -4199.638500 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 337.041 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.88921 -41.47353 -40.15162 -39.69624 -38.16218 -36.35924 -35.81332 -35.57278 -34.02618 -33.35756 -32.90725 -30.68249 -28.72046 -27.73886 -26.02850 -23.86359 -23.48535 -23.31179 -22.14123 -20.66635 -20.05279 -19.54363 -19.16273 -18.38298 -17.99420 -17.64957 -17.39875 -16.93678 -16.52723 -16.21865 -16.17016 -15.92924 -15.77259 -14.87852 -14.62176 -14.44811 -13.72495 -13.71141 -13.45782 -13.03701 -12.87673 -12.76668 -12.75610 -12.58755 -12.12339 -12.09317 -11.81463 -11.70740 -11.63229 -11.56746 -11.20866 -10.78716 -10.25798 -9.76510 -9.10140 -9.05824 -6.68103 -2.02545 -0.80795 -0.80189 0.21319 0.29108 0.58450 0.79676 1.05197 1.28047 1.40885 1.45632 1.50710 1.74512 2.06575 2.34298 2.56729 2.62392 3.02950 3.28845 3.51875 4.02155 4.22003 4.48164 4.50653 4.65869 4.71458 4.74196 5.02332 5.22879 5.25049 5.34176 5.62987 5.73273 5.90905 6.04024 6.26496 6.52068 6.60443 6.80884 7.62789 7.92041 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.029809 B = 0.002536 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.084344 B =11038.099731 C =11796.315671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.056 3.944 3 Si 0.971 3.029 4 H -0.251 1.251 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.472 4.472 8 H 0.072 0.928 9 C 0.110 3.890 10 C -0.322 4.322 11 C 0.139 3.861 12 N -0.581 5.581 13 C 0.361 3.639 14 N -0.634 5.634 15 C 0.579 3.421 16 O -0.461 6.461 17 C 0.016 3.984 18 N -0.276 5.276 19 H 0.492 0.508 20 N -0.151 5.151 21 C 0.111 3.889 22 N 0.015 4.985 23 O -0.144 6.144 24 O -0.143 6.143 25 C -0.039 4.039 26 Cl 0.047 6.953 27 C -0.298 4.298 28 H 0.307 0.693 29 H 0.111 0.889 30 H 0.153 0.847 31 H 0.429 0.571 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.257 -7.681 3.391 14.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.169 4.169 3 Si 0.794 3.206 4 H -0.177 1.177 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.501 4.501 8 H 0.090 0.910 9 C 0.103 3.897 10 C -0.345 4.345 11 C -0.014 4.014 12 N -0.301 5.301 13 C 0.135 3.865 14 N -0.283 5.283 15 C 0.361 3.639 16 O -0.327 6.327 17 C -0.114 4.114 18 N -0.010 5.010 19 H 0.349 0.651 20 N 0.001 4.999 21 C -0.126 4.126 22 N 0.496 4.504 23 O -0.339 6.339 24 O -0.334 6.334 25 C -0.079 4.079 26 Cl 0.076 6.924 27 C -0.324 4.324 28 H 0.119 0.881 29 H 0.129 0.871 30 H 0.171 0.829 31 H 0.268 0.732 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 11.496 -7.499 3.164 14.086 hybrid contribution -0.958 0.632 0.132 1.156 sum 10.538 -6.866 3.296 13.002 Atomic orbital electron populations 1.69015 1.09972 1.33073 1.29949 1.28248 0.95058 1.04361 0.89202 0.85463 0.79135 0.75768 0.80235 1.17650 1.19952 1.18267 1.20694 0.92420 0.94474 1.42475 0.91023 1.17748 0.92690 0.90865 0.88416 1.22179 0.97330 1.06241 1.08768 1.22163 0.89760 0.94244 0.95188 1.67118 1.39074 1.06862 1.16997 1.18002 0.86859 0.89065 0.92567 1.42925 1.05063 1.26889 1.53373 1.16741 0.81691 0.84687 0.80785 1.91050 1.74331 1.30107 1.37177 1.21279 0.92798 0.92049 1.05229 1.43742 1.10029 1.10542 1.36646 0.65087 1.73076 0.92282 1.18913 1.15618 1.20672 0.84086 0.95083 1.12789 1.49035 1.01192 1.01672 0.98472 1.96332 1.91950 1.02534 1.43081 1.96376 1.31317 1.57967 1.47718 1.20926 0.91530 0.92990 1.02425 1.98477 1.63712 1.53589 1.76606 1.21381 0.91321 1.07814 1.11854 0.88109 0.87141 0.82949 0.73192 0.85023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.55 13.89 23.18 0.32 -37.23 16 2 C 0.06 2.62 5.63 87.15 0.49 3.11 16 3 Si 0.97 37.79 24.61 68.60 1.69 39.47 16 4 H -0.25 -9.27 6.50 99.48 0.65 -8.62 16 5 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 6 H -0.26 -10.63 6.96 99.48 0.69 -9.94 16 7 C -0.47 -22.94 9.94 25.12 0.25 -22.69 16 8 H 0.07 3.67 8.06 -2.91 -0.02 3.65 16 9 C 0.11 4.98 5.27 -21.10 -0.11 4.87 16 10 C -0.32 -13.95 7.46 22.95 0.17 -13.78 16 11 C 0.14 5.67 11.15 84.59 0.94 6.61 16 12 N -0.58 -23.86 7.85 -193.43 -1.52 -25.38 16 13 C 0.36 12.99 7.41 132.93 0.98 13.98 16 14 N -0.63 -15.31 5.38 -311.93 -1.68 -16.99 16 15 C 0.58 14.89 7.75 86.53 0.67 15.56 16 16 O -0.46 -16.05 14.12 -4.18 -0.06 -16.10 16 17 C 0.02 0.30 7.16 40.75 0.29 0.59 16 18 N -0.28 -2.98 6.86 -47.94 -0.33 -3.31 16 19 H 0.49 0.43 8.23 -220.01 -1.81 -1.38 16 20 N -0.15 -2.50 12.12 -49.50 -0.60 -3.10 16 21 C 0.11 2.43 8.23 130.31 1.07 3.51 16 22 N 0.01 0.37 4.98 -49.48 -0.25 0.13 16 23 O -0.14 -3.79 19.96 3.51 0.07 -3.72 16 24 O -0.14 -3.85 18.55 3.53 0.07 -3.78 16 25 C -0.04 -0.88 6.83 22.73 0.16 -0.72 16 26 Cl 0.05 1.18 26.78 -2.72 -0.07 1.11 16 27 C -0.30 -11.47 9.76 23.12 0.23 -11.24 16 28 H 0.31 12.71 8.27 -92.71 -0.77 11.94 16 29 H 0.11 4.68 4.27 -2.91 -0.01 4.67 16 30 H 0.15 5.34 8.06 -2.91 -0.02 5.32 16 31 H 0.43 5.59 7.89 -92.71 -0.73 4.86 16 32 H 0.13 4.31 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -64.91 315.11 1.44 -63.47 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -1.35 Total: 5.63 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: 5.14 Total: -0.21 kcal Atomic # 7 Polarization: -81.82 SS G_CDS: -4.05 Total: -85.87 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: 0.08 Total: -23.60 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 1.69 Total: 39.47 kcal Atomic # 17 Polarization: 1.18 SS G_CDS: -0.07 Total: 1.11 kcal Total: -64.91 1.44 -63.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001294624886.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.258 kcal (2) G-P(sol) polarization free energy of solvation -64.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds