Wall clock time and date at job start Tue Mar 31 2020 19:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86799 * 120.00213 * 2 1 4 4 H 1.48503 * 109.47323 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46996 * 299.99779 * 3 2 1 6 6 H 1.48506 * 109.47096 * 59.99386 * 3 2 1 7 7 C 1.38952 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00143 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00048 * 0.02562 * 7 2 1 10 10 C 1.34770 * 119.99879 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00169 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99680 * 179.97438 * 10 9 7 13 13 S 1.81004 * 109.46971 * 180.02562 * 12 10 9 14 14 C 1.76195 * 99.99791 * 180.02562 * 13 12 10 15 15 N 1.31409 * 125.66628 * 0.02562 * 14 13 12 16 16 C 1.33914 * 109.61132 * 179.97438 * 15 14 13 17 17 C 1.35873 * 108.22099 * 0.02562 * 16 15 14 18 18 C 1.47787 * 126.69164 * 180.02562 * 17 16 15 19 19 C 1.39615 * 120.13268 * 179.69507 * 18 17 16 20 20 C 1.37936 * 119.85482 * 179.69450 * 19 18 17 21 21 C 1.38476 * 120.13856 * 0.60568 * 20 19 18 22 22 Cl 1.73601 * 119.86281 * 179.69580 * 21 20 19 23 23 C 1.38466 * 120.27240 * 359.67070 * 21 20 19 24 24 C 1.37933 * 120.13708 * 0.02647 * 23 21 20 25 25 N 1.36163 * 125.66207 * 179.97438 * 14 13 12 26 26 H 0.97007 * 126.55953 * 0.02562 * 25 14 13 27 27 H 0.96995 * 119.99700 * 0.02562 * 1 2 3 28 28 H 0.97005 * 119.99668 * 359.97438 * 9 7 2 29 29 H 1.08996 * 109.47387 * 60.00272 * 12 10 9 30 30 H 1.08995 * 109.47184 * 299.99784 * 12 10 9 31 31 H 1.08006 * 125.88770 * 179.97438 * 16 15 14 32 32 H 1.08000 * 120.07092 * 359.97438 * 19 18 17 33 33 H 1.08003 * 119.92850 * 180.29903 * 20 19 18 34 34 H 1.08004 * 119.93321 * 180.02562 * 23 21 20 35 35 H 1.08002 * 120.07264 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3963 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2437 -4.8630 0.0011 13 16 2.4199 -6.2387 0.0017 14 6 1.2997 -7.5988 0.0016 15 7 -0.0115 -7.5116 0.0006 16 6 -0.5437 -8.7404 0.0002 17 6 0.4717 -9.6432 0.0015 18 6 0.3442 -11.1156 0.0011 19 6 1.4868 -11.9180 -0.0038 20 6 1.3612 -13.2916 0.0022 21 6 0.1053 -13.8749 0.0005 22 17 -0.0445 -15.6045 0.0001 23 6 -1.0316 -13.0844 -0.0005 24 6 -0.9191 -11.7097 -0.0002 25 7 1.6490 -8.9149 0.0014 26 1 2.5504 -9.2735 0.0017 27 1 -0.4849 0.8400 -0.0004 28 1 0.3533 -2.3907 0.0005 29 1 0.6167 -4.9209 -0.8886 30 1 0.6174 -4.9205 0.8913 31 1 -1.5983 -8.9736 -0.0001 32 1 2.4668 -11.4641 -0.0077 33 1 2.2442 -13.9134 0.0033 34 1 -2.0084 -13.5452 -0.0014 35 1 -1.8065 -11.0941 -0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307407856.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:48 Heat of formation + Delta-G solvation = 32.524266 kcal Electronic energy + Delta-G solvation = -21699.321819 eV Core-core repulsion = 18042.929716 eV Total energy + Delta-G solvation = -3656.392103 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 337.039 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.96934 -39.47348 -38.22527 -36.88575 -34.09961 -33.05327 -32.23507 -31.46267 -31.42673 -29.42368 -28.29355 -24.73332 -23.67349 -23.54241 -21.60766 -20.95807 -19.82485 -18.99173 -18.02962 -17.32628 -16.23680 -15.97472 -15.84687 -15.43042 -15.28148 -14.57134 -14.50286 -14.26316 -14.21408 -14.05500 -13.91589 -13.79772 -13.19070 -12.57931 -12.30120 -12.19688 -12.00466 -12.00114 -11.59161 -11.26720 -11.14066 -10.44614 -10.40198 -10.35102 -10.30810 -10.24606 -9.94174 -9.64510 -9.58095 -8.68244 -8.67541 -8.10560 -7.19733 -6.51834 -3.93700 0.30388 0.79972 1.26007 1.69092 1.86958 2.33368 2.81621 2.98734 3.10465 3.23055 3.30183 3.34677 3.71488 4.10179 4.22570 4.27452 4.35400 4.72954 4.78532 4.81595 4.88989 5.07590 5.13987 5.22980 5.38914 5.56092 5.64696 5.69739 5.73908 5.81623 6.09042 6.11322 6.22595 6.41112 6.92465 7.46387 7.69555 7.90966 8.43590 9.03971 9.37585 9.85977 10.65122 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.052187 B = 0.001663 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.404003 B =16829.966268 C =17351.225845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.304 4.304 8 H 0.107 0.893 9 N -0.546 5.546 10 C 0.449 3.551 11 O -0.586 6.586 12 C -0.118 4.118 13 S 0.060 5.940 14 C 0.203 3.797 15 N -0.489 5.489 16 C 0.025 3.975 17 C -0.003 4.003 18 C 0.010 3.990 19 C -0.113 4.113 20 C -0.099 4.099 21 C -0.043 4.043 22 Cl -0.072 7.072 23 C -0.099 4.099 24 C -0.095 4.095 25 N -0.552 5.552 26 H 0.422 0.578 27 H 0.274 0.726 28 H 0.396 0.604 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.176 0.824 32 H 0.126 0.874 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.854 -27.162 -0.001 27.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.433 4.433 8 H 0.125 0.875 9 N -0.181 5.181 10 C 0.233 3.767 11 O -0.472 6.472 12 C -0.271 4.271 13 S 0.290 5.710 14 C -0.168 4.168 15 N -0.212 5.212 16 C -0.128 4.128 17 C -0.119 4.119 18 C 0.008 3.992 19 C -0.132 4.132 20 C -0.118 4.118 21 C -0.070 4.070 22 Cl -0.043 7.043 23 C -0.117 4.117 24 C -0.114 4.114 25 N -0.158 5.158 26 H 0.261 0.739 27 H 0.084 0.916 28 H 0.230 0.770 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.193 0.807 32 H 0.144 0.856 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.471 -26.302 -0.001 26.343 hybrid contribution -0.865 -0.342 0.001 0.930 sum -2.336 -26.644 0.000 26.746 Atomic orbital electron populations 1.69624 1.06016 1.28429 1.49367 1.25328 0.95674 0.99919 0.96770 0.85750 0.79726 0.80757 0.77821 1.19079 1.20604 1.20608 1.19811 0.93535 0.81851 1.48147 0.87522 1.41749 1.09471 1.04174 1.62682 1.18961 0.87857 0.83883 0.86017 1.90558 1.13268 1.86502 1.56883 1.23593 1.00984 0.94580 1.07894 1.86200 1.02796 0.90080 1.91905 1.26097 0.95976 0.88777 1.05922 1.70778 1.04115 1.24848 1.21436 1.22441 0.98880 0.87487 1.03981 1.19512 0.86127 0.91122 1.15178 1.17979 0.93770 0.88563 0.98863 1.21067 0.98039 0.92894 1.01228 1.20923 0.96242 0.94724 0.99878 1.20987 0.95096 0.84716 1.06196 1.98379 1.98297 1.10698 1.96934 1.20980 0.97926 0.93064 0.99772 1.21058 0.96725 0.93907 0.99702 1.43210 1.08820 1.05510 1.58308 0.73864 0.91638 0.76993 0.87192 0.87199 0.80704 0.85579 0.84674 0.84407 0.84243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.77 13.05 55.50 0.72 -23.05 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.50 29.55 -169.99 -5.02 15.48 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 8 H 0.11 3.03 7.16 -52.48 -0.38 2.66 16 9 N -0.55 -13.57 5.29 -10.96 -0.06 -13.62 16 10 C 0.45 10.41 7.80 -10.99 -0.09 10.33 16 11 O -0.59 -15.42 15.44 5.55 0.09 -15.34 16 12 C -0.12 -2.13 5.67 36.01 0.20 -1.93 16 13 S 0.06 0.98 21.45 -107.50 -2.31 -1.33 16 14 C 0.20 2.91 8.25 -88.58 -0.73 2.18 16 15 N -0.49 -7.37 10.56 -13.16 -0.14 -7.51 16 16 C 0.02 0.30 11.26 -17.49 -0.20 0.10 16 17 C 0.00 -0.03 6.97 -81.82 -0.57 -0.60 16 18 C 0.01 0.09 5.87 -104.97 -0.62 -0.53 16 19 C -0.11 -0.86 9.72 -39.18 -0.38 -1.24 16 20 C -0.10 -0.70 9.81 -39.60 -0.39 -1.09 16 21 C -0.04 -0.32 6.32 -39.41 -0.25 -0.57 16 22 Cl -0.07 -0.52 28.95 -51.86 -1.50 -2.02 16 23 C -0.10 -0.68 9.81 -39.61 -0.39 -1.07 16 24 C -0.09 -0.69 9.58 -39.18 -0.38 -1.07 16 25 N -0.55 -6.18 6.15 -9.31 -0.06 -6.24 16 26 H 0.42 3.53 8.23 -40.82 -0.34 3.19 16 27 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 28 H 0.40 9.43 7.90 -40.82 -0.32 9.11 16 29 H 0.11 1.87 8.14 -51.92 -0.42 1.45 16 30 H 0.11 1.87 8.14 -51.92 -0.42 1.44 16 31 H 0.18 1.56 7.29 -52.48 -0.38 1.18 16 32 H 0.13 0.74 7.30 -52.49 -0.38 0.36 16 33 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 34 H 0.14 0.70 8.06 -52.48 -0.42 0.27 16 35 H 0.14 0.76 7.04 -52.49 -0.37 0.39 16 LS Contribution 343.61 15.07 5.18 5.18 Total: -1.00 -31.57 343.61 -10.11 -41.67 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -2.99 Total: 10.10 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -4.02 Total: -3.32 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: 0.47 Total: -50.42 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: 0.09 Total: -15.34 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.31 Total: -1.33 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.50 Total: -2.02 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.57 -10.11 -41.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307407856.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.199 kcal (2) G-P(sol) polarization free energy of solvation -31.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds