Wall clock time and date at job start Tue Mar 31 2020 19:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86799 * 120.00213 * 2 1 4 4 H 1.48503 * 109.47323 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46996 * 299.99779 * 3 2 1 6 6 H 1.48506 * 109.47096 * 59.99386 * 3 2 1 7 7 C 1.38952 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00143 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00048 * 0.02562 * 7 2 1 10 10 C 1.34770 * 119.99879 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00169 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99680 * 179.97438 * 10 9 7 13 13 S 1.81004 * 109.46971 * 180.02562 * 12 10 9 14 14 C 1.76195 * 99.99791 * 180.02562 * 13 12 10 15 15 N 1.31409 * 125.66628 * 0.02562 * 14 13 12 16 16 C 1.33914 * 109.61132 * 179.97438 * 15 14 13 17 17 C 1.35873 * 108.22099 * 0.02562 * 16 15 14 18 18 C 1.47787 * 126.69164 * 180.02562 * 17 16 15 19 19 C 1.39615 * 120.13268 * 179.69507 * 18 17 16 20 20 C 1.37936 * 119.85482 * 179.69450 * 19 18 17 21 21 C 1.38476 * 120.13856 * 0.60568 * 20 19 18 22 22 Cl 1.73601 * 119.86281 * 179.69580 * 21 20 19 23 23 C 1.38466 * 120.27240 * 359.67070 * 21 20 19 24 24 C 1.37933 * 120.13708 * 0.02647 * 23 21 20 25 25 N 1.36163 * 125.66207 * 179.97438 * 14 13 12 26 26 H 0.97007 * 126.55953 * 0.02562 * 25 14 13 27 27 H 0.96995 * 119.99700 * 0.02562 * 1 2 3 28 28 H 0.97005 * 119.99668 * 359.97438 * 9 7 2 29 29 H 1.08996 * 109.47387 * 60.00272 * 12 10 9 30 30 H 1.08995 * 109.47184 * 299.99784 * 12 10 9 31 31 H 1.08006 * 125.88770 * 179.97438 * 16 15 14 32 32 H 1.08000 * 120.07092 * 359.97438 * 19 18 17 33 33 H 1.08003 * 119.92850 * 180.29903 * 20 19 18 34 34 H 1.08004 * 119.93321 * 180.02562 * 23 21 20 35 35 H 1.08002 * 120.07264 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3963 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2437 -4.8630 0.0011 13 16 2.4199 -6.2387 0.0017 14 6 1.2997 -7.5988 0.0016 15 7 -0.0115 -7.5116 0.0006 16 6 -0.5437 -8.7404 0.0002 17 6 0.4717 -9.6432 0.0015 18 6 0.3442 -11.1156 0.0011 19 6 1.4868 -11.9180 -0.0038 20 6 1.3612 -13.2916 0.0022 21 6 0.1053 -13.8749 0.0005 22 17 -0.0445 -15.6045 0.0001 23 6 -1.0316 -13.0844 -0.0005 24 6 -0.9191 -11.7097 -0.0002 25 7 1.6490 -8.9149 0.0014 26 1 2.5504 -9.2735 0.0017 27 1 -0.4849 0.8400 -0.0004 28 1 0.3533 -2.3907 0.0005 29 1 0.6167 -4.9209 -0.8886 30 1 0.6174 -4.9205 0.8913 31 1 -1.5983 -8.9736 -0.0001 32 1 2.4668 -11.4641 -0.0077 33 1 2.2442 -13.9134 0.0033 34 1 -2.0084 -13.5452 -0.0014 35 1 -1.8065 -11.0941 -0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307407856.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:47 Heat of formation + Delta-G solvation = 13.801651 kcal Electronic energy + Delta-G solvation = -21700.133692 eV Core-core repulsion = 18042.929716 eV Total energy + Delta-G solvation = -3657.203976 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 337.039 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.89905 -40.14517 -40.05855 -37.45492 -36.08878 -33.96721 -33.41833 -32.95238 -32.03671 -30.99513 -29.17572 -26.68152 -24.46514 -24.16614 -22.47685 -21.80299 -21.50953 -20.21923 -19.78355 -18.10535 -17.75572 -17.12777 -16.56117 -16.53582 -16.46410 -16.11399 -16.03877 -15.77980 -14.94837 -14.89603 -14.63953 -14.51584 -14.39650 -14.30282 -13.78608 -13.49347 -12.93925 -12.91515 -12.70165 -12.55433 -12.44384 -12.10154 -11.81010 -11.70318 -11.58068 -11.30005 -11.26217 -10.77844 -10.60838 -10.11259 -10.10502 -9.53491 -8.51231 -8.28517 -6.01432 -0.36795 0.05651 0.26651 1.01076 1.03558 1.12794 1.35320 1.43770 1.58140 1.88878 1.90113 2.10520 2.28802 2.71586 3.04890 3.15096 3.54776 3.67454 3.84858 4.01464 4.14943 4.17956 4.18991 4.23824 4.33243 4.44378 4.59966 4.77168 4.94524 5.10446 5.19595 5.38556 5.43170 5.52417 5.67984 5.89951 6.09134 6.46692 6.73995 7.03058 7.41643 7.93771 8.65924 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.052187 B = 0.001663 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.404003 B =16829.966268 C =17351.225845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.009 4.009 3 Si 0.997 3.003 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.086 0.914 9 N -0.555 5.555 10 C 0.450 3.550 11 O -0.619 6.619 12 C -0.106 4.106 13 S 0.049 5.951 14 C 0.180 3.820 15 N -0.513 5.513 16 C 0.000 4.000 17 C 0.021 3.979 18 C -0.012 4.012 19 C -0.112 4.112 20 C -0.105 4.105 21 C -0.047 4.047 22 Cl -0.071 7.071 23 C -0.103 4.103 24 C -0.090 4.090 25 N -0.540 5.540 26 H 0.434 0.566 27 H 0.280 0.720 28 H 0.400 0.600 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.201 0.799 32 H 0.140 0.860 33 H 0.150 0.850 34 H 0.156 0.844 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.529 -28.768 -0.002 28.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.210 4.210 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.104 0.896 9 N -0.191 5.191 10 C 0.236 3.764 11 O -0.507 6.507 12 C -0.258 4.258 13 S 0.279 5.721 14 C -0.191 4.191 15 N -0.236 5.236 16 C -0.152 4.152 17 C -0.096 4.096 18 C -0.014 4.014 19 C -0.131 4.131 20 C -0.124 4.124 21 C -0.074 4.074 22 Cl -0.042 7.042 23 C -0.121 4.121 24 C -0.109 4.109 25 N -0.147 5.147 26 H 0.276 0.724 27 H 0.090 0.910 28 H 0.234 0.766 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.218 0.782 32 H 0.158 0.842 33 H 0.168 0.832 34 H 0.174 0.826 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.155 -27.933 -0.002 28.016 hybrid contribution -0.704 -0.135 0.001 0.717 sum -2.859 -28.068 -0.001 28.214 Atomic orbital electron populations 1.69684 1.06970 1.29601 1.49207 1.26122 0.96549 1.02602 0.95693 0.84808 0.78102 0.76677 0.78368 1.19525 1.19534 1.19543 1.19796 0.92976 0.83485 1.50461 0.89637 1.41798 1.09564 1.04340 1.63387 1.19708 0.87697 0.85087 0.83920 1.90529 1.15017 1.87415 1.57757 1.23309 1.00852 0.92687 1.08912 1.86076 1.02891 0.90247 1.92908 1.25526 0.95628 0.89079 1.08832 1.70684 1.04552 1.26757 1.21606 1.22918 1.00460 0.86669 1.05112 1.19839 0.85431 0.92024 1.12311 1.18033 0.94901 0.87335 1.01109 1.21268 0.98442 0.93105 1.00295 1.21121 0.96814 0.94750 0.99699 1.21213 0.95591 0.84922 1.05631 1.98384 1.98302 1.10640 1.96878 1.21214 0.98666 0.92907 0.99321 1.21300 0.96875 0.94309 0.98381 1.43176 1.09807 1.04570 1.57185 0.72430 0.91025 0.76615 0.86093 0.86099 0.78211 0.84224 0.83201 0.82607 0.82485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.61 13.05 21.66 0.28 -48.32 16 2 C -0.01 -0.46 5.50 84.93 0.47 0.00 16 3 Si 1.00 41.98 29.55 68.60 2.03 44.01 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 6 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.34 -18.85 9.68 84.04 0.81 -18.04 16 8 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16 9 N -0.56 -28.33 5.29 -306.98 -1.62 -29.95 16 10 C 0.45 21.40 7.80 87.66 0.68 22.08 16 11 O -0.62 -33.54 15.44 -3.07 -0.05 -33.59 16 12 C -0.11 -3.85 5.67 71.24 0.40 -3.45 16 13 S 0.05 1.60 21.45 -56.49 -1.21 0.39 16 14 C 0.18 5.05 8.25 179.64 1.48 6.54 16 15 N -0.51 -15.02 10.56 -195.56 -2.06 -17.09 16 16 C 0.00 0.00 11.26 83.83 0.94 0.95 16 17 C 0.02 0.42 6.97 40.08 0.28 0.70 16 18 C -0.01 -0.18 5.87 -20.09 -0.12 -0.30 16 19 C -0.11 -1.44 9.72 22.53 0.22 -1.22 16 20 C -0.11 -1.25 9.81 22.25 0.22 -1.03 16 21 C -0.05 -0.59 6.32 22.38 0.14 -0.45 16 22 Cl -0.07 -0.89 28.95 -2.72 -0.08 -0.97 16 23 C -0.10 -1.14 9.81 22.25 0.22 -0.92 16 24 C -0.09 -1.07 9.58 22.53 0.22 -0.85 16 25 N -0.54 -11.38 6.15 -183.37 -1.13 -12.51 16 26 H 0.43 6.64 8.23 -92.70 -0.76 5.87 16 27 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 28 H 0.40 19.46 7.90 -92.70 -0.73 18.73 16 29 H 0.12 4.13 8.14 -2.40 -0.02 4.11 16 30 H 0.12 4.12 8.14 -2.40 -0.02 4.10 16 31 H 0.20 3.14 7.29 -2.91 -0.02 3.12 16 32 H 0.14 1.31 7.30 -2.91 -0.02 1.29 16 33 H 0.15 1.28 8.06 -2.91 -0.02 1.25 16 34 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 35 H 0.16 1.24 7.04 -2.91 -0.02 1.22 16 Total: -1.00 -68.06 343.61 1.81 -66.25 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: -0.31 Total: 27.77 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 5.97 Total: 4.01 kcal Atomic # 7 Polarization: -103.34 SS G_CDS: -4.53 Total: -107.87 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -0.05 Total: -33.59 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -1.21 Total: 0.39 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.08 Total: -0.97 kcal Total: -68.06 1.81 -66.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307407856.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.053 kcal (2) G-P(sol) polarization free energy of solvation -68.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds