Wall clock time and date at job start Tue Mar 31 2020 20:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00179 * 2 1 4 4 H 1.48499 * 109.47050 * 270.00142 * 3 2 1 5 5 H 1.48499 * 109.47196 * 29.99694 * 3 2 1 6 6 H 1.48502 * 109.47582 * 149.99935 * 3 2 1 7 7 C 1.37880 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00435 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99913 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47165 * 179.97438 * 9 7 2 11 11 C 1.34775 * 119.99708 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00481 * 359.97438 * 11 10 9 13 13 C 1.50704 * 119.99826 * 179.97438 * 11 10 9 14 14 O 1.42896 * 109.47224 * 179.97438 * 13 11 10 15 15 C 1.34998 * 117.00056 * 179.97438 * 14 13 11 16 16 O 1.21719 * 119.99616 * 0.02562 * 15 14 13 17 17 C 1.41409 * 119.99777 * 180.02562 * 15 14 13 18 18 C 1.38829 * 126.81283 * 180.02562 * 17 15 14 19 19 Cl 1.73598 * 125.92362 * 0.02562 * 18 17 15 20 20 N 1.32362 * 108.16002 * 180.02562 * 18 17 15 21 21 C 1.33243 * 109.85542 * 359.97438 * 20 18 17 22 22 C 1.40635 * 131.76509 * 180.02562 * 21 20 18 23 23 C 1.36302 * 119.39294 * 180.02562 * 22 21 20 24 24 C 1.40155 * 119.60439 * 359.97438 * 23 22 21 25 25 C 1.35274 * 120.11385 * 359.97438 * 24 23 22 26 26 N 1.35929 * 120.64320 * 0.02562 * 25 24 23 27 27 H 0.96997 * 120.00373 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47204 * 59.99408 * 9 7 2 29 29 H 1.09005 * 109.46725 * 299.99708 * 9 7 2 30 30 H 0.96999 * 120.00263 * 359.97438 * 10 9 7 31 31 H 1.09002 * 109.46889 * 59.99664 * 13 11 10 32 32 H 1.08997 * 109.47354 * 300.00269 * 13 11 10 33 33 H 1.08001 * 120.29996 * 0.02562 * 22 21 20 34 34 H 1.08000 * 120.19662 * 180.24839 * 23 22 21 35 35 H 1.07997 * 119.94123 * 180.02562 * 24 23 22 36 36 H 1.08004 * 119.68193 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8833 0.0011 12 8 0.5613 -5.1050 0.0020 13 6 2.7330 -6.0288 0.0005 14 8 2.0186 -7.2663 0.0018 15 6 2.7538 -8.3985 0.0009 16 8 3.9693 -8.3348 -0.0004 17 6 2.1118 -9.6585 0.0016 18 6 2.7244 -10.9043 0.0014 19 17 4.4354 -11.1979 0.0008 20 7 1.7778 -11.8295 0.0016 21 6 0.5782 -11.2496 0.0026 22 6 -0.7217 -11.7863 0.0037 23 6 -1.7933 -10.9439 0.0040 24 6 -1.5845 -9.5580 0.0038 25 6 -0.3263 -9.0612 0.0038 26 7 0.7476 -9.8945 0.0035 27 1 -0.4850 0.8400 0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8904 30 1 3.1567 -3.4355 0.0002 31 1 3.3604 -5.9709 0.8900 32 1 3.3591 -5.9712 -0.8899 33 1 -0.8695 -12.8561 0.0043 34 1 -2.7972 -11.3420 0.0089 35 1 -2.4296 -8.8856 0.0044 36 1 -0.1734 -7.9920 0.0040 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317944501.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:02 Heat of formation + Delta-G solvation = -32.611426 kcal Electronic energy + Delta-G solvation = -25375.984500 eV Core-core repulsion = 21274.015031 eV Total energy + Delta-G solvation = -4101.969469 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.066 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.44142 -40.60936 -38.82765 -38.07826 -36.85187 -36.47357 -34.36962 -34.31467 -32.48043 -30.80823 -30.25257 -29.01722 -26.82254 -24.83094 -24.05081 -23.06510 -22.48275 -21.18057 -20.05300 -19.04889 -17.71148 -17.42291 -17.19661 -17.04635 -16.65208 -16.28963 -16.10111 -15.46766 -15.18987 -15.00509 -14.80814 -14.61053 -14.34076 -13.29276 -13.28688 -13.02866 -12.98521 -12.68852 -12.24134 -12.06091 -11.87822 -11.70770 -11.56021 -11.52650 -11.09098 -11.04706 -10.96706 -10.77489 -10.56567 -10.39605 -9.50306 -9.29314 -9.26404 -8.84384 -8.49850 -8.07656 -6.25299 -4.32757 0.09950 0.27392 1.19869 1.68177 2.02727 2.33193 2.69134 2.97860 3.06747 3.19609 3.26224 3.28379 3.63190 3.92148 4.05175 4.27692 4.28980 4.42674 4.55099 4.79788 4.97671 5.07387 5.11152 5.16705 5.19361 5.25326 5.51236 5.54629 5.68713 5.89440 6.13548 6.35248 6.97476 7.13904 7.21054 7.37909 7.49303 7.56827 7.85544 8.41164 8.63038 8.86852 9.33917 10.84828 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.017515 B = 0.002445 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.249450 B =11447.755749 C =13025.559642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.065 0.935 9 C 0.252 3.748 10 N -0.704 5.704 11 C 0.502 3.498 12 O -0.540 6.540 13 C 0.050 3.950 14 O -0.334 6.334 15 C 0.544 3.456 16 O -0.487 6.487 17 C -0.122 4.122 18 C 0.211 3.789 19 Cl 0.041 6.959 20 N -0.489 5.489 21 C 0.270 3.730 22 C -0.098 4.098 23 C -0.069 4.069 24 C -0.137 4.137 25 C 0.082 3.918 26 N -0.324 5.324 27 H 0.267 0.733 28 H 0.030 0.970 29 H 0.030 0.970 30 H 0.394 0.606 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.161 0.839 34 H 0.153 0.847 35 H 0.165 0.835 36 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.437 -23.375 0.012 23.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.083 0.917 9 C 0.132 3.868 10 N -0.354 5.354 11 C 0.285 3.715 12 O -0.419 6.419 13 C -0.028 4.028 14 O -0.250 6.250 15 C 0.390 3.610 16 O -0.375 6.375 17 C -0.234 4.234 18 C 0.042 3.958 19 Cl 0.069 6.931 20 N -0.211 5.211 21 C 0.030 3.970 22 C -0.118 4.118 23 C -0.093 4.093 24 C -0.157 4.157 25 C -0.043 4.043 26 N 0.005 4.995 27 H 0.077 0.923 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.227 0.773 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.178 0.822 34 H 0.171 0.829 35 H 0.182 0.818 36 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -0.775 -24.088 0.018 24.100 hybrid contribution 1.078 1.932 -0.009 2.212 sum 0.303 -22.156 0.009 22.158 Atomic orbital electron populations 1.69961 1.06131 1.27472 1.48657 1.24945 0.94937 0.99515 0.94537 0.86389 0.79634 0.82462 0.78297 1.20394 1.20950 1.19684 1.21206 0.93364 0.90275 1.53592 0.91735 1.19184 0.88131 0.81526 0.98003 1.46371 1.11652 1.05328 1.72004 1.19859 0.89000 0.83998 0.78614 1.90663 1.16350 1.84643 1.50203 1.22522 0.94663 0.80755 1.04869 1.86144 1.40349 1.14100 1.84415 1.17859 0.85613 0.82930 0.74640 1.90986 1.12980 1.87025 1.46487 1.18483 0.80831 0.93543 1.30570 1.21319 0.89374 0.87278 0.97852 1.98439 1.02448 1.96152 1.96031 1.70300 0.95500 1.30435 1.24867 1.20884 0.95071 0.78992 1.02037 1.20378 0.86374 1.02020 1.02980 1.21325 0.99857 0.92793 0.95371 1.21139 0.96016 0.96478 1.02104 1.22420 0.84637 0.98275 0.98954 1.42628 1.05677 1.08808 1.42369 0.92340 0.95247 0.95227 0.77289 0.88434 0.88425 0.82155 0.82916 0.81763 0.79189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.25 13.29 55.43 0.74 -24.51 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 20.30 29.54 -169.99 -5.02 15.28 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.55 -14.25 9.28 -34.44 -0.32 -14.57 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.25 6.33 5.43 -5.19 -0.03 6.30 16 10 N -0.70 -13.86 5.55 -61.47 -0.34 -14.20 16 11 C 0.50 9.39 7.91 -10.98 -0.09 9.31 16 12 O -0.54 -12.00 16.50 -14.36 -0.24 -12.23 16 13 C 0.05 0.72 5.86 36.01 0.21 0.93 16 14 O -0.33 -5.05 7.74 -48.08 -0.37 -5.42 16 15 C 0.54 8.04 7.72 31.94 0.25 8.29 16 16 O -0.49 -7.64 15.26 -19.43 -0.30 -7.94 16 17 C -0.12 -1.70 6.84 -83.45 -0.57 -2.27 16 18 C 0.21 2.88 7.76 -17.10 -0.13 2.75 16 19 Cl 0.04 0.51 27.81 -51.86 -1.44 -0.94 16 20 N -0.49 -6.41 11.25 -9.37 -0.11 -6.51 16 21 C 0.27 3.04 7.77 -156.05 -1.21 1.83 16 22 C -0.10 -0.71 10.10 -39.37 -0.40 -1.10 16 23 C -0.07 -0.37 10.07 -39.56 -0.40 -0.77 16 24 C -0.14 -0.96 10.00 -39.92 -0.40 -1.36 16 25 C 0.08 0.85 10.52 -16.79 -0.18 0.67 16 26 N -0.32 -3.94 2.96 -60.14 -0.18 -4.12 16 27 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.39 6.55 8.32 -40.82 -0.34 6.21 16 31 H 0.10 1.24 8.13 -51.93 -0.42 0.81 16 32 H 0.10 1.24 8.13 -51.93 -0.42 0.82 16 33 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.15 0.30 8.06 -52.49 -0.42 -0.12 16 35 H 0.16 0.77 8.06 -52.49 -0.42 0.34 16 36 H 0.19 2.24 6.61 -52.48 -0.35 1.89 16 LS Contribution 343.46 15.07 5.18 5.18 Total: -1.00 -33.36 343.46 -8.62 -41.98 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -3.18 Total: 1.80 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: -3.36 Total: 11.63 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: 0.11 Total: -49.34 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.91 Total: -25.59 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 17 Polarization: 0.51 SS G_CDS: -1.44 Total: -0.94 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.36 -8.62 -41.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317944501.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.368 kcal (2) G-P(sol) polarization free energy of solvation -33.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds