Wall clock time and date at job start Tue Mar 31 2020 20:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00179 * 2 1 4 4 H 1.48499 * 109.47050 * 270.00142 * 3 2 1 5 5 H 1.48499 * 109.47196 * 29.99694 * 3 2 1 6 6 H 1.48502 * 109.47582 * 149.99935 * 3 2 1 7 7 C 1.37880 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00435 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99913 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47165 * 179.97438 * 9 7 2 11 11 C 1.34775 * 119.99708 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00481 * 359.97438 * 11 10 9 13 13 C 1.50704 * 119.99826 * 179.97438 * 11 10 9 14 14 O 1.42896 * 109.47224 * 179.97438 * 13 11 10 15 15 C 1.34998 * 117.00056 * 179.97438 * 14 13 11 16 16 O 1.21719 * 119.99616 * 0.02562 * 15 14 13 17 17 C 1.41409 * 119.99777 * 180.02562 * 15 14 13 18 18 C 1.38829 * 126.81283 * 180.02562 * 17 15 14 19 19 Cl 1.73598 * 125.92362 * 0.02562 * 18 17 15 20 20 N 1.32362 * 108.16002 * 180.02562 * 18 17 15 21 21 C 1.33243 * 109.85542 * 359.97438 * 20 18 17 22 22 C 1.40635 * 131.76509 * 180.02562 * 21 20 18 23 23 C 1.36302 * 119.39294 * 180.02562 * 22 21 20 24 24 C 1.40155 * 119.60439 * 359.97438 * 23 22 21 25 25 C 1.35274 * 120.11385 * 359.97438 * 24 23 22 26 26 N 1.35929 * 120.64320 * 0.02562 * 25 24 23 27 27 H 0.96997 * 120.00373 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47204 * 59.99408 * 9 7 2 29 29 H 1.09005 * 109.46725 * 299.99708 * 9 7 2 30 30 H 0.96999 * 120.00263 * 359.97438 * 10 9 7 31 31 H 1.09002 * 109.46889 * 59.99664 * 13 11 10 32 32 H 1.08997 * 109.47354 * 300.00269 * 13 11 10 33 33 H 1.08001 * 120.29996 * 0.02562 * 22 21 20 34 34 H 1.08000 * 120.19662 * 180.24839 * 23 22 21 35 35 H 1.07997 * 119.94123 * 180.02562 * 24 23 22 36 36 H 1.08004 * 119.68193 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8833 0.0011 12 8 0.5613 -5.1050 0.0020 13 6 2.7330 -6.0288 0.0005 14 8 2.0186 -7.2663 0.0018 15 6 2.7538 -8.3985 0.0009 16 8 3.9693 -8.3348 -0.0004 17 6 2.1118 -9.6585 0.0016 18 6 2.7244 -10.9043 0.0014 19 17 4.4354 -11.1979 0.0008 20 7 1.7778 -11.8295 0.0016 21 6 0.5782 -11.2496 0.0026 22 6 -0.7217 -11.7863 0.0037 23 6 -1.7933 -10.9439 0.0040 24 6 -1.5845 -9.5580 0.0038 25 6 -0.3263 -9.0612 0.0038 26 7 0.7476 -9.8945 0.0035 27 1 -0.4850 0.8400 0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8904 30 1 3.1567 -3.4355 0.0002 31 1 3.3604 -5.9709 0.8900 32 1 3.3591 -5.9712 -0.8899 33 1 -0.8695 -12.8561 0.0043 34 1 -2.7972 -11.3420 0.0089 35 1 -2.4296 -8.8856 0.0044 36 1 -0.1734 -7.9920 0.0040 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317944501.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:01 Heat of formation + Delta-G solvation = -53.816943 kcal Electronic energy + Delta-G solvation = -25376.904040 eV Core-core repulsion = 21274.015031 eV Total energy + Delta-G solvation = -4102.889009 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.066 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.27674 -41.78668 -40.36328 -38.91259 -37.75742 -37.64426 -36.18787 -35.11285 -34.42083 -31.64508 -31.23548 -30.35565 -28.52696 -25.79860 -24.89162 -24.51628 -23.70475 -22.16020 -21.68131 -20.03389 -19.22710 -18.39956 -18.26305 -17.98029 -17.86467 -17.31210 -17.30730 -16.95935 -16.70071 -16.10105 -15.99836 -15.72716 -15.57693 -14.77914 -14.56314 -14.17699 -14.09645 -13.90977 -13.69492 -13.52027 -12.96752 -12.89669 -12.72905 -12.65817 -12.41037 -12.24085 -12.21641 -12.09868 -11.96495 -11.56300 -11.50366 -10.92349 -10.82212 -10.10074 -9.93534 -9.30112 -8.30450 -6.46335 -0.77007 -0.37914 0.26815 0.81246 1.08798 1.26570 1.44545 1.45349 1.52007 1.56849 1.66064 2.30753 2.32780 2.54306 2.87108 3.05154 3.31017 3.44811 3.62765 3.75382 3.90102 4.02296 4.02447 4.04009 4.34672 4.50068 4.79442 4.94024 5.00068 5.08078 5.09051 5.22291 5.32849 5.40812 5.59292 5.61727 5.81824 6.09710 6.40024 6.62244 6.75741 7.18925 7.33238 8.81499 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.017515 B = 0.002445 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.249450 B =11447.755749 C =13025.559642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.982 3.018 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.257 1.257 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.268 3.732 10 N -0.698 5.698 11 C 0.504 3.496 12 O -0.579 6.579 13 C 0.060 3.940 14 O -0.344 6.344 15 C 0.548 3.452 16 O -0.504 6.504 17 C -0.156 4.156 18 C 0.205 3.795 19 Cl 0.041 6.959 20 N -0.509 5.509 21 C 0.258 3.742 22 C -0.098 4.098 23 C -0.044 4.044 24 C -0.113 4.113 25 C 0.046 3.954 26 N -0.327 5.327 27 H 0.269 0.731 28 H -0.006 1.006 29 H -0.005 1.005 30 H 0.412 0.588 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.190 0.810 34 H 0.203 0.797 35 H 0.192 0.808 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.827 -24.265 0.020 24.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.805 3.195 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.181 1.181 7 C -0.595 4.595 8 H 0.102 0.898 9 C 0.146 3.854 10 N -0.349 5.349 11 C 0.289 3.711 12 O -0.459 6.459 13 C -0.017 4.017 14 O -0.260 6.260 15 C 0.395 3.605 16 O -0.393 6.393 17 C -0.268 4.268 18 C 0.035 3.965 19 Cl 0.070 6.930 20 N -0.231 5.231 21 C 0.020 3.980 22 C -0.118 4.118 23 C -0.068 4.068 24 C -0.132 4.132 25 C -0.079 4.079 26 N 0.003 4.997 27 H 0.078 0.922 28 H 0.012 0.988 29 H 0.013 0.987 30 H 0.248 0.752 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.208 0.792 34 H 0.220 0.780 35 H 0.209 0.791 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.133 -25.000 0.026 25.025 hybrid contribution 0.966 2.080 -0.013 2.294 sum -0.166 -22.919 0.013 22.920 Atomic orbital electron populations 1.70110 1.08119 1.28608 1.49856 1.25993 0.95760 1.03691 0.93875 0.85199 0.78522 0.77223 0.78558 1.19691 1.20980 1.18086 1.21612 0.94392 0.90513 1.53008 0.89786 1.18624 0.88476 0.83578 0.94721 1.46044 1.11787 1.04730 1.72370 1.20523 0.89198 0.84518 0.76851 1.90643 1.18480 1.85246 1.51550 1.22408 0.93079 0.79044 1.07160 1.86146 1.40790 1.14358 1.84697 1.17938 0.85454 0.82891 0.74199 1.90957 1.13396 1.87159 1.47773 1.18404 0.82031 0.93117 1.33261 1.21438 0.89629 0.87487 0.97968 1.98424 1.02431 1.96141 1.96032 1.70271 0.96162 1.30669 1.26003 1.21592 0.96022 0.78705 1.01690 1.20931 0.84840 1.03873 1.02137 1.21886 1.01517 0.91435 0.91967 1.21647 0.95130 0.98083 0.98390 1.22460 0.85622 0.97576 1.02264 1.42649 1.05270 1.09370 1.42386 0.92187 0.98763 0.98739 0.75181 0.86039 0.86028 0.79247 0.78013 0.79082 0.81441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.20 13.29 21.45 0.28 -53.91 16 2 C 0.01 0.37 5.46 84.66 0.46 0.83 16 3 Si 0.98 41.24 29.54 68.60 2.03 43.26 16 4 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 7 C -0.56 -29.19 9.28 25.60 0.24 -28.95 16 8 H 0.08 3.97 7.60 -2.91 -0.02 3.95 16 9 C 0.27 13.99 5.43 85.64 0.46 14.45 16 10 N -0.70 -27.76 5.55 -466.77 -2.59 -30.35 16 11 C 0.50 19.16 7.91 87.66 0.69 19.85 16 12 O -0.58 -26.74 16.50 16.00 0.26 -26.47 16 13 C 0.06 1.71 5.86 71.24 0.42 2.13 16 14 O -0.34 -10.62 7.74 -52.70 -0.41 -11.03 16 15 C 0.55 16.61 7.72 68.60 0.53 17.14 16 16 O -0.50 -15.98 15.26 19.12 0.29 -15.68 16 17 C -0.16 -4.49 6.84 39.02 0.27 -4.23 16 18 C 0.21 5.75 7.76 84.75 0.66 6.40 16 19 Cl 0.04 1.05 27.81 -2.72 -0.08 0.97 16 20 N -0.51 -13.28 11.25 -183.56 -2.06 -15.34 16 21 C 0.26 5.58 7.77 133.99 1.04 6.62 16 22 C -0.10 -1.10 10.10 22.40 0.23 -0.88 16 23 C -0.04 -0.28 10.07 22.28 0.22 -0.05 16 24 C -0.11 -1.27 10.00 22.05 0.22 -1.05 16 25 C 0.05 0.93 10.52 83.37 0.88 1.81 16 26 N -0.33 -7.98 2.96 -344.19 -1.02 -9.00 16 27 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 28 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 29 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 30 H 0.41 13.33 8.32 -92.71 -0.77 12.56 16 31 H 0.12 2.93 8.13 -2.39 -0.02 2.91 16 32 H 0.12 2.93 8.13 -2.39 -0.02 2.91 16 33 H 0.19 1.00 8.06 -2.91 -0.02 0.97 16 34 H 0.20 -0.59 8.06 -2.91 -0.02 -0.61 16 35 H 0.19 1.10 8.06 -2.91 -0.02 1.08 16 36 H 0.17 4.20 6.61 -2.91 -0.02 4.18 16 Total: -1.00 -76.62 343.46 3.42 -73.20 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 0.39 Total: 10.28 kcal Atomic # 6 Polarization: 27.77 SS G_CDS: 6.32 Total: 34.09 kcal Atomic # 7 Polarization: -103.22 SS G_CDS: -5.39 Total: -108.61 kcal Atomic # 8 Polarization: -53.34 SS G_CDS: 0.15 Total: -53.19 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.26 kcal Atomic # 17 Polarization: 1.05 SS G_CDS: -0.08 Total: 0.97 kcal Total: -76.62 3.42 -73.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317944501.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.381 kcal (2) G-P(sol) polarization free energy of solvation -76.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds