Wall clock time and date at job start Tue Mar 31 2020 20:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86804 * 119.99961 * 2 1 4 4 H 1.48499 * 109.47022 * 269.99891 * 3 2 1 5 5 H 1.48493 * 109.47085 * 30.00148 * 3 2 1 6 6 H 1.48501 * 109.46525 * 150.00062 * 3 2 1 7 7 C 1.38944 * 119.99716 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00340 * 359.97438 * 7 2 1 9 9 N 1.37102 * 120.00085 * 180.02562 * 7 2 1 10 10 C 1.34774 * 120.00265 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99960 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99978 * 180.02562 * 10 9 7 13 13 O 1.45198 * 109.46774 * 179.97438 * 12 10 9 14 14 C 1.34234 * 116.99857 * 179.97438 * 13 12 10 15 15 O 1.20826 * 119.99899 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00126 * 180.02562 * 14 13 12 17 17 C 1.50697 * 109.47152 * 180.02562 * 16 14 13 18 18 C 1.33714 * 122.08195 * 124.99876 * 17 16 14 19 19 S 1.76249 * 108.21874 * 179.72543 * 18 17 16 20 20 C 1.76169 * 89.83874 * 0.02562 * 19 18 17 21 21 C 1.47902 * 125.47301 * 179.97438 * 20 19 18 22 22 N 1.34119 * 125.67162 * 179.66484 * 21 20 19 23 23 C 1.30626 * 109.77246 * 179.81549 * 22 21 20 24 24 N 1.34570 * 108.34053 * 0.44356 * 23 22 21 25 25 H 0.96994 * 126.73019 * 179.74681 * 24 23 22 26 26 N 1.31654 * 125.67429 * 359.97228 * 21 20 19 27 27 N 1.30223 * 109.05659 * 359.97438 * 20 19 18 28 28 H 0.97002 * 119.99545 * 0.02562 * 1 2 3 29 29 H 0.96999 * 119.99533 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.47318 * 59.99778 * 12 10 9 31 31 H 1.08995 * 109.46961 * 299.99253 * 12 10 9 32 32 H 1.08999 * 109.47429 * 59.99846 * 16 14 13 33 33 H 1.09003 * 109.46701 * 299.99918 * 16 14 13 34 34 H 1.08006 * 125.88653 * 359.70455 * 18 17 16 35 35 H 1.08003 * 125.82998 * 180.19465 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0020 12 6 5.5607 -2.3706 0.0001 13 8 6.0446 -3.7396 -0.0007 14 6 7.3753 -3.9156 -0.0004 15 8 8.1114 -2.9574 0.0001 16 6 7.9513 -5.3081 -0.0018 17 6 9.4562 -5.2293 -0.0005 18 6 10.1987 -5.8424 0.9274 19 16 11.8954 -5.5171 0.5787 20 6 11.4190 -4.5600 -0.8215 21 6 12.3456 -3.8692 -1.7444 22 7 11.9877 -3.1449 -2.8150 23 6 13.0530 -2.6727 -3.4053 24 7 14.1355 -3.0947 -2.7264 25 1 15.0628 -2.9026 -2.9358 26 7 13.6591 -3.8675 -1.6549 27 7 10.1201 -4.5585 -0.9135 28 1 -0.4849 0.8401 -0.0004 29 1 3.8648 -0.3634 0.0004 30 1 5.9234 -1.8580 0.8910 31 1 5.9247 -1.8557 -0.8889 32 1 7.6157 -5.8393 -0.8925 33 1 7.6149 -5.8413 0.8874 34 1 9.8232 -6.4344 1.7490 35 1 13.0634 -2.0530 -4.2898 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318454479.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:30 Heat of formation + Delta-G solvation = 32.414433 kcal Electronic energy + Delta-G solvation = -24580.670777 eV Core-core repulsion = 20515.857498 eV Total energy + Delta-G solvation = -4064.813279 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.068 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.53565 -40.65268 -39.60395 -38.21153 -36.03625 -34.00569 -33.75404 -32.41830 -31.76392 -31.62928 -29.30188 -27.99738 -26.07222 -24.43335 -23.31850 -22.14807 -20.76976 -19.68608 -19.57068 -18.81363 -18.54346 -18.09199 -17.48344 -16.55271 -16.16214 -16.05256 -15.93587 -15.45203 -15.38124 -14.87319 -14.51306 -14.14742 -14.01266 -13.57885 -13.39734 -12.89251 -12.81149 -12.71287 -12.19842 -12.13046 -12.03200 -11.71644 -11.21954 -10.99708 -10.60868 -10.58519 -10.49010 -10.40231 -10.33809 -10.00930 -9.98714 -9.67990 -9.62697 -8.93639 -8.60253 -8.24424 -6.34945 -3.87500 -0.05454 0.81995 1.14052 1.27451 1.99809 2.09076 2.39864 2.69812 3.01364 3.03182 3.07873 3.15890 3.22869 3.61943 3.90570 4.08061 4.30686 4.50070 4.51768 4.70005 4.85705 5.07638 5.16323 5.19003 5.31979 5.44539 5.53373 5.58696 5.64287 5.74014 5.76916 6.45464 6.64562 7.31462 7.50032 7.54903 7.94655 8.06345 8.53012 8.88444 9.34935 9.71327 10.77420 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.016996 B = 0.002201 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.066694 B =12718.226899 C =13943.292599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.044 3.956 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.307 4.307 8 H 0.122 0.878 9 N -0.581 5.581 10 C 0.449 3.551 11 O -0.557 6.557 12 C 0.060 3.940 13 O -0.326 6.326 14 C 0.460 3.540 15 O -0.495 6.495 16 C -0.038 4.038 17 C 0.077 3.923 18 C -0.230 4.230 19 S 0.146 5.854 20 C 0.135 3.865 21 C 0.303 3.697 22 N -0.502 5.502 23 C 0.269 3.731 24 N -0.477 5.477 25 H 0.446 0.554 26 N -0.293 5.293 27 N -0.396 5.396 28 H 0.275 0.725 29 H 0.373 0.627 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.190 0.810 35 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.746 -8.020 -2.785 32.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.435 4.435 8 H 0.140 0.860 9 N -0.221 5.221 10 C 0.234 3.766 11 O -0.439 6.439 12 C -0.018 4.018 13 O -0.241 6.241 14 C 0.301 3.699 15 O -0.382 6.382 16 C -0.078 4.078 17 C -0.057 4.057 18 C -0.370 4.370 19 S 0.400 5.600 20 C -0.144 4.144 21 C 0.020 3.980 22 N -0.229 5.229 23 C -0.031 4.031 24 N -0.197 5.197 25 H 0.293 0.707 26 N -0.126 5.126 27 N -0.111 5.111 28 H 0.086 0.914 29 H 0.206 0.794 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.207 0.793 35 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 32.059 -8.619 -2.293 33.277 hybrid contribution 0.404 1.941 -0.362 2.015 sum 32.463 -6.678 -2.654 33.249 Atomic orbital electron populations 1.69619 1.05631 1.27684 1.48635 1.25033 0.95522 0.98042 0.97348 0.86679 0.79858 0.83883 0.79104 1.19404 1.20010 1.19350 1.19425 0.78710 0.96849 1.48506 0.86010 1.42043 1.07622 1.05749 1.66714 1.19225 0.87008 0.85086 0.85241 1.90598 1.69102 1.30728 1.53466 1.22710 0.94890 0.80629 1.03566 1.86531 1.23065 1.31114 1.83394 1.23258 0.81062 0.92179 0.73357 1.90701 1.60486 1.42620 1.44369 1.19847 0.87311 0.93046 1.07592 1.19468 0.96474 0.97552 0.92179 1.27044 0.95415 1.08873 1.05698 1.85016 1.05985 1.45351 1.23675 1.23528 0.90585 1.02821 0.97434 1.20566 0.87747 0.96637 0.93036 1.70723 1.29446 1.14625 1.08101 1.26345 0.81357 0.97068 0.98302 1.48129 1.11003 1.39361 1.21184 0.70717 1.78264 1.10212 1.16385 1.07691 1.66191 1.04306 1.15608 1.24957 0.91449 0.79392 0.89569 0.89379 0.85445 0.85521 0.79304 0.75270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.45 13.96 55.50 0.77 -24.68 16 2 C 0.04 1.21 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 19.41 27.74 -169.99 -4.71 14.69 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.43 6.52 56.52 0.37 -5.07 16 7 C -0.31 -8.70 10.16 -14.93 -0.15 -8.85 16 8 H 0.12 3.92 7.39 -52.48 -0.39 3.53 16 9 N -0.58 -14.10 5.09 -10.96 -0.06 -14.16 16 10 C 0.45 10.65 7.86 -10.99 -0.09 10.56 16 11 O -0.56 -15.50 16.08 -14.11 -0.23 -15.73 16 12 C 0.06 1.12 5.94 36.01 0.21 1.33 16 13 O -0.33 -5.95 9.75 -45.91 -0.45 -6.40 16 14 C 0.46 7.27 7.92 36.00 0.29 7.55 16 15 O -0.49 -9.09 15.18 -18.75 -0.28 -9.37 16 16 C -0.04 -0.41 6.28 -29.04 -0.18 -0.60 16 17 C 0.08 0.92 5.60 -84.40 -0.47 0.44 16 18 C -0.23 -2.03 11.02 29.15 0.32 -1.71 16 19 S 0.15 1.36 23.43 -107.50 -2.52 -1.16 16 20 C 0.13 1.74 7.54 -14.28 -0.11 1.64 16 21 C 0.30 3.79 8.04 -156.60 -1.26 2.53 16 22 N -0.50 -6.08 11.22 -12.47 -0.14 -6.22 16 23 C 0.27 1.72 13.11 -90.70 -1.19 0.53 16 24 N -0.48 -2.73 7.44 29.52 0.22 -2.51 16 25 H 0.45 0.59 8.96 -182.35 -1.63 -1.05 16 26 N -0.29 -2.98 12.84 32.03 0.41 -2.57 16 27 N -0.40 -5.74 9.67 -7.54 -0.07 -5.81 16 28 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.37 7.93 5.76 -40.82 -0.24 7.70 16 30 H 0.09 1.44 8.13 -51.93 -0.42 1.02 16 31 H 0.09 1.50 8.13 -51.93 -0.42 1.08 16 32 H 0.13 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.13 0.95 8.01 -51.93 -0.42 0.53 16 34 H 0.19 0.97 8.06 -52.48 -0.42 0.55 16 35 H 0.23 0.22 8.06 -52.48 -0.42 -0.20 16 LS Contribution 341.07 15.07 5.14 5.14 Total: -1.00 -40.82 341.07 -8.60 -49.42 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -3.95 Total: 4.82 kcal Atomic # 6 Polarization: 17.27 SS G_CDS: -2.73 Total: 14.55 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 1.14 Total: -55.95 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -0.96 Total: -31.50 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.71 Total: 14.69 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.52 Total: -1.16 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -40.82 -8.60 -49.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318454479.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.835 kcal (2) G-P(sol) polarization free energy of solvation -40.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds