Wall clock time and date at job start Tue Mar 31 2020 20:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86804 * 119.99961 * 2 1 4 4 H 1.48499 * 109.47022 * 269.99891 * 3 2 1 5 5 H 1.48493 * 109.47085 * 30.00148 * 3 2 1 6 6 H 1.48501 * 109.46525 * 150.00062 * 3 2 1 7 7 C 1.38944 * 119.99716 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00340 * 359.97438 * 7 2 1 9 9 N 1.37102 * 120.00085 * 180.02562 * 7 2 1 10 10 C 1.34774 * 120.00265 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99960 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99978 * 180.02562 * 10 9 7 13 13 O 1.45198 * 109.46774 * 179.97438 * 12 10 9 14 14 C 1.34234 * 116.99857 * 179.97438 * 13 12 10 15 15 O 1.20826 * 119.99899 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00126 * 180.02562 * 14 13 12 17 17 C 1.50697 * 109.47152 * 180.02562 * 16 14 13 18 18 C 1.33714 * 122.08195 * 124.99876 * 17 16 14 19 19 S 1.76249 * 108.21874 * 179.72543 * 18 17 16 20 20 C 1.76169 * 89.83874 * 0.02562 * 19 18 17 21 21 C 1.47902 * 125.47301 * 179.97438 * 20 19 18 22 22 N 1.34119 * 125.67162 * 179.66484 * 21 20 19 23 23 C 1.30626 * 109.77246 * 179.81549 * 22 21 20 24 24 N 1.34570 * 108.34053 * 0.44356 * 23 22 21 25 25 H 0.96994 * 126.73019 * 179.74681 * 24 23 22 26 26 N 1.31654 * 125.67429 * 359.97228 * 21 20 19 27 27 N 1.30223 * 109.05659 * 359.97438 * 20 19 18 28 28 H 0.97002 * 119.99545 * 0.02562 * 1 2 3 29 29 H 0.96999 * 119.99533 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.47318 * 59.99778 * 12 10 9 31 31 H 1.08995 * 109.46961 * 299.99253 * 12 10 9 32 32 H 1.08999 * 109.47429 * 59.99846 * 16 14 13 33 33 H 1.09003 * 109.46701 * 299.99918 * 16 14 13 34 34 H 1.08006 * 125.88653 * 359.70455 * 18 17 16 35 35 H 1.08003 * 125.82998 * 180.19465 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0020 12 6 5.5607 -2.3706 0.0001 13 8 6.0446 -3.7396 -0.0007 14 6 7.3753 -3.9156 -0.0004 15 8 8.1114 -2.9574 0.0001 16 6 7.9513 -5.3081 -0.0018 17 6 9.4562 -5.2293 -0.0005 18 6 10.1987 -5.8424 0.9274 19 16 11.8954 -5.5171 0.5787 20 6 11.4190 -4.5600 -0.8215 21 6 12.3456 -3.8692 -1.7444 22 7 11.9877 -3.1449 -2.8150 23 6 13.0530 -2.6727 -3.4053 24 7 14.1355 -3.0947 -2.7264 25 1 15.0628 -2.9026 -2.9358 26 7 13.6591 -3.8675 -1.6549 27 7 10.1201 -4.5585 -0.9135 28 1 -0.4849 0.8401 -0.0004 29 1 3.8648 -0.3634 0.0004 30 1 5.9234 -1.8580 0.8910 31 1 5.9247 -1.8557 -0.8889 32 1 7.6157 -5.8393 -0.8925 33 1 7.6149 -5.8413 0.8874 34 1 9.8232 -6.4344 1.7490 35 1 13.0634 -2.0530 -4.2898 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318454479.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:29 Heat of formation + Delta-G solvation = 1.123383 kcal Electronic energy + Delta-G solvation = -24582.027659 eV Core-core repulsion = 20515.857498 eV Total energy + Delta-G solvation = -4066.170161 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.068 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.14950 -41.79355 -40.69420 -40.01283 -37.42237 -36.07174 -34.44664 -33.85984 -33.13667 -32.37487 -30.53075 -29.22335 -26.87613 -26.34571 -23.88630 -23.15487 -21.74727 -21.52298 -20.51881 -20.38695 -19.41128 -19.05464 -18.60074 -17.85532 -17.67853 -17.21012 -16.79326 -16.71655 -16.51140 -15.92412 -15.87038 -15.46081 -15.17567 -14.80000 -14.54322 -14.24433 -14.21038 -14.19721 -13.50832 -13.33238 -13.25696 -12.99240 -12.47363 -12.45857 -12.00486 -11.81883 -11.68962 -11.58611 -11.53012 -11.26482 -11.16098 -10.79235 -10.59538 -10.42343 -10.33646 -9.64926 -8.45780 -6.08526 -0.78923 0.09754 0.50694 0.56281 1.20472 1.24767 1.30543 1.33585 1.43531 1.52755 1.65563 1.76160 2.15297 2.20148 2.63031 2.86792 3.08515 3.27643 3.62726 3.79652 3.99116 4.00966 4.08357 4.14202 4.15504 4.25853 4.50004 4.57646 4.84279 4.91174 5.08024 5.36155 5.49692 5.85833 6.13095 6.47512 6.60103 6.71610 6.78823 6.92321 7.26143 7.77699 8.70784 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.016996 B = 0.002201 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.066694 B =12718.226899 C =13943.292599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.008 4.008 3 Si 0.960 3.040 4 H -0.256 1.256 5 H -0.270 1.270 6 H -0.234 1.234 7 C -0.332 4.332 8 H 0.062 0.938 9 N -0.577 5.577 10 C 0.450 3.550 11 O -0.606 6.606 12 C 0.070 3.930 13 O -0.344 6.344 14 C 0.461 3.539 15 O -0.523 6.523 16 C -0.031 4.031 17 C 0.046 3.954 18 C -0.208 4.208 19 S 0.186 5.814 20 C 0.100 3.900 21 C 0.279 3.721 22 N -0.560 5.560 23 C 0.285 3.715 24 N -0.459 5.459 25 H 0.466 0.534 26 N -0.310 5.310 27 N -0.437 5.437 28 H 0.282 0.718 29 H 0.392 0.608 30 H 0.113 0.887 31 H 0.109 0.891 32 H 0.139 0.861 33 H 0.166 0.834 34 H 0.230 0.770 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.023 -6.948 -2.418 35.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.208 4.208 3 Si 0.780 3.220 4 H -0.180 1.180 5 H -0.195 1.195 6 H -0.157 1.157 7 C -0.461 4.461 8 H 0.080 0.920 9 N -0.219 5.219 10 C 0.237 3.763 11 O -0.491 6.491 12 C -0.008 4.008 13 O -0.260 6.260 14 C 0.304 3.696 15 O -0.411 6.411 16 C -0.070 4.070 17 C -0.087 4.087 18 C -0.348 4.348 19 S 0.440 5.560 20 C -0.177 4.177 21 C -0.004 4.004 22 N -0.289 5.289 23 C -0.013 4.013 24 N -0.181 5.181 25 H 0.317 0.683 26 N -0.144 5.144 27 N -0.153 5.153 28 H 0.092 0.908 29 H 0.228 0.772 30 H 0.131 0.869 31 H 0.127 0.873 32 H 0.157 0.843 33 H 0.184 0.816 34 H 0.246 0.754 35 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges 35.405 -7.545 -1.939 36.252 hybrid contribution -0.551 1.493 -0.500 1.668 sum 34.854 -6.051 -2.439 35.459 Atomic orbital electron populations 1.69781 1.07981 1.29521 1.49138 1.26068 0.96476 1.02559 0.95651 0.85430 0.79514 0.76929 0.80143 1.17996 1.19506 1.15728 1.19013 0.80672 0.95382 1.51021 0.91956 1.41834 1.06177 1.07003 1.66916 1.20152 0.89253 0.84030 0.82825 1.90572 1.70899 1.32518 1.55071 1.22514 0.90600 0.81876 1.05777 1.86547 1.24912 1.30586 1.83908 1.24190 0.79662 0.93851 0.71913 1.90687 1.60643 1.43981 1.45764 1.20056 0.86872 0.90133 1.09978 1.19641 0.96802 0.99134 0.93168 1.27532 0.94948 1.07139 1.05201 1.84806 1.05982 1.43635 1.21558 1.23829 0.90638 1.04163 0.99111 1.20745 0.88366 0.97595 0.93697 1.70652 1.32376 1.16539 1.09303 1.27208 0.80085 0.95605 0.98370 1.48054 1.12110 1.38051 1.19854 0.68344 1.78134 1.09460 1.17390 1.09381 1.66150 1.05462 1.17002 1.26658 0.90815 0.77193 0.86928 0.87341 0.84290 0.81649 0.75356 0.70384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.16 13.96 21.66 0.30 -54.86 16 2 C -0.01 -0.42 5.50 84.92 0.47 0.05 16 3 Si 0.96 38.85 27.74 68.60 1.90 40.76 16 4 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 6 H -0.23 -8.12 6.52 99.48 0.65 -7.47 16 7 C -0.33 -19.52 10.16 84.04 0.85 -18.66 16 8 H 0.06 4.32 7.39 -2.91 -0.02 4.30 16 9 N -0.58 -27.96 5.09 -306.98 -1.56 -29.52 16 10 C 0.45 21.47 7.86 87.66 0.69 22.16 16 11 O -0.61 -34.92 16.08 15.73 0.25 -34.67 16 12 C 0.07 2.51 5.94 71.24 0.42 2.93 16 13 O -0.34 -12.23 9.75 -45.10 -0.44 -12.67 16 14 C 0.46 13.98 7.92 71.24 0.56 14.55 16 15 O -0.52 -18.73 15.18 21.96 0.33 -18.40 16 16 C -0.03 -0.62 6.28 29.10 0.18 -0.44 16 17 C 0.05 1.03 5.60 41.61 0.23 1.26 16 18 C -0.21 -3.12 11.02 66.79 0.74 -2.38 16 19 S 0.19 3.20 23.43 -56.49 -1.32 1.88 16 20 C 0.10 2.58 7.54 87.49 0.66 3.24 16 21 C 0.28 7.02 8.04 137.23 1.10 8.12 16 22 N -0.56 -13.51 11.22 -193.37 -2.17 -15.68 16 23 C 0.29 3.17 13.11 180.38 2.36 5.53 16 24 N -0.46 -4.51 7.44 -60.52 -0.45 -4.96 16 25 H 0.47 0.20 8.96 -213.11 -1.91 -1.71 16 26 N -0.31 -6.14 12.84 -52.58 -0.68 -6.81 16 27 N -0.44 -12.65 9.67 -177.78 -1.72 -14.37 16 28 H 0.28 15.32 8.31 -92.71 -0.77 14.54 16 29 H 0.39 15.80 5.76 -92.71 -0.53 15.26 16 30 H 0.11 3.49 8.13 -2.39 -0.02 3.47 16 31 H 0.11 3.49 8.13 -2.39 -0.02 3.48 16 32 H 0.14 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.17 1.92 8.01 -2.39 -0.02 1.90 16 34 H 0.23 1.32 8.06 -2.91 -0.02 1.30 16 35 H 0.28 -0.38 8.06 -2.91 -0.02 -0.40 16 Total: -1.00 -96.46 341.07 1.43 -95.03 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -1.30 Total: 17.91 kcal Atomic # 6 Polarization: 28.08 SS G_CDS: 8.28 Total: 36.36 kcal Atomic # 7 Polarization: -119.92 SS G_CDS: -6.27 Total: -126.20 kcal Atomic # 8 Polarization: -65.88 SS G_CDS: 0.15 Total: -65.73 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 1.90 Total: 40.76 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -1.32 Total: 1.88 kcal Total: -96.46 1.43 -95.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318454479.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.150 kcal (2) G-P(sol) polarization free energy of solvation -96.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds