Wall clock time and date at job start Tue Mar 31 2020 19:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34234 * 116.99672 * 2 1 4 4 O 1.20820 * 120.00260 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99728 * 179.97438 * 3 2 1 6 6 N 1.46504 * 109.47185 * 179.97438 * 5 3 2 7 7 C 1.36951 * 120.00095 * 264.15956 * 6 5 3 8 8 H 1.08005 * 119.99884 * 201.59430 * 7 6 5 9 9 C 1.38963 * 120.00023 * 21.60777 * 7 6 5 10 10 N 1.31419 * 120.00276 * 10.44469 * 9 7 6 11 11 Si 1.86799 * 119.99845 * 190.45381 * 9 7 6 12 12 H 1.48501 * 109.47347 * 59.99060 * 11 9 7 13 13 H 1.48507 * 109.47211 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47034 * 299.99202 * 11 9 7 15 15 C 1.34781 * 119.99646 * 84.16255 * 6 5 3 16 16 O 1.21721 * 119.99789 * 5.56773 * 15 6 5 17 17 C 1.46649 * 119.99853 * 185.57143 * 15 6 5 18 18 C 1.40033 * 120.86813 * 76.87365 * 17 15 6 19 19 N 1.31606 * 119.28592 * 180.25464 * 18 17 15 20 20 C 1.33682 * 122.38770 * 359.42652 * 19 18 17 21 21 S 1.71459 * 128.65623 * 180.24682 * 20 19 18 22 22 C 1.75590 * 91.30604 * 180.31025 * 21 20 19 23 23 C 1.31035 * 109.50088 * 0.02562 * 22 21 20 24 24 N 1.35134 * 121.40171 * 0.58988 * 20 19 18 25 25 C 1.36386 * 119.27334 * 359.71347 * 24 20 19 26 26 O 1.21864 * 120.30632 * 180.02562 * 25 24 20 27 27 H 1.09000 * 109.46987 * 299.99775 * 1 2 3 28 28 H 1.08998 * 109.47227 * 60.00274 * 1 2 3 29 29 H 1.09002 * 109.46758 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46854 * 60.00588 * 5 3 2 31 31 H 1.08996 * 109.47813 * 300.00720 * 5 3 2 32 32 H 0.97006 * 120.00514 * 180.02562 * 10 9 7 33 33 H 1.07995 * 120.35384 * 359.97438 * 18 17 15 34 34 H 1.08010 * 125.25177 * 179.97438 * 22 21 20 35 35 H 1.07995 * 122.31499 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6799 -0.0002 7 6 4.2921 3.3015 -1.1803 8 1 4.9138 4.1847 -1.1782 9 6 3.8069 2.7962 -2.3804 10 7 2.8908 1.8539 -2.3742 11 14 4.4569 3.4562 -4.0025 12 1 5.9214 3.2228 -4.0807 13 1 3.7839 2.7572 -5.1267 14 1 4.1825 4.9130 -4.0898 15 6 4.0584 3.3605 1.1607 16 8 3.8816 2.7830 2.2175 17 6 4.3548 4.7966 1.1503 18 6 3.3691 5.7313 0.8101 19 7 3.6705 7.0123 0.8061 20 6 4.8876 7.4625 1.1273 21 16 5.4510 9.0810 1.1812 22 6 7.0519 8.5498 1.6693 23 6 7.0705 7.2427 1.7593 24 7 5.8851 6.6158 1.4650 25 6 5.6428 5.2737 1.4840 26 8 6.5286 4.4932 1.7863 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.9563 0.7807 -0.8893 31 1 3.9558 0.7810 0.8907 32 1 2.5524 1.5009 -3.2120 33 1 2.3735 5.4040 0.5494 34 1 7.8920 9.2001 1.8644 35 1 7.9570 6.6963 2.0455 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318755009.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:35 Heat of formation + Delta-G solvation = -73.527838 kcal Electronic energy + Delta-G solvation = -27311.961664 eV Core-core repulsion = 23210.261633 eV Total energy + Delta-G solvation = -4101.700031 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.061 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.53081 -41.36435 -40.24492 -38.97976 -38.12560 -37.26907 -36.55377 -33.57641 -32.51979 -32.35945 -30.21585 -28.08705 -27.61886 -26.52549 -25.36380 -23.67196 -22.23159 -21.30991 -20.20446 -19.89879 -19.64440 -18.56746 -18.32984 -17.98701 -17.68117 -17.28633 -16.98609 -16.70940 -16.29522 -16.18045 -15.52329 -15.37791 -15.01547 -14.81123 -14.67488 -14.37485 -14.26409 -13.95882 -13.58879 -13.41108 -13.13037 -12.89772 -12.67649 -12.62111 -12.55440 -12.19980 -11.82695 -11.58123 -11.54520 -11.38990 -11.31435 -10.99589 -10.77474 -10.50296 -9.94919 -8.72536 -8.44147 -6.07520 -1.11033 -0.47907 0.18087 0.38339 0.77070 0.96065 1.36189 1.40241 1.50893 1.63154 1.76394 2.12476 2.22808 2.30239 2.77381 2.98932 3.05710 3.18800 3.85523 4.11311 4.16449 4.28024 4.28795 4.36438 4.40268 4.42636 4.54852 4.69347 4.72442 4.78386 5.00715 5.16464 5.27411 5.55507 5.66788 6.26026 6.28212 6.43376 6.96378 7.18241 7.33397 7.75438 8.61827 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.014470 B = 0.004386 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.596000 B = 6382.373116 C = 7201.315303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.375 6.375 3 C 0.494 3.506 4 O -0.536 6.536 5 C 0.152 3.848 6 N -0.424 5.424 7 C -0.340 4.340 8 H 0.087 0.913 9 C 0.005 3.995 10 N -0.893 5.893 11 Si 0.994 3.006 12 H -0.266 1.266 13 H -0.273 1.273 14 H -0.269 1.269 15 C 0.533 3.467 16 O -0.630 6.630 17 C -0.317 4.317 18 C 0.248 3.752 19 N -0.530 5.530 20 C 0.238 3.762 21 S 0.352 5.648 22 C -0.195 4.195 23 C 0.022 3.978 24 N -0.455 5.455 25 C 0.536 3.464 26 O -0.556 6.556 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.134 0.866 30 H 0.129 0.871 31 H 0.082 0.918 32 H 0.277 0.723 33 H 0.173 0.827 34 H 0.261 0.739 35 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.581 14.668 1.793 15.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.292 6.292 3 C 0.337 3.663 4 O -0.424 6.424 5 C 0.027 3.973 6 N -0.140 5.140 7 C -0.467 4.467 8 H 0.105 0.895 9 C -0.197 4.197 10 N -0.531 5.531 11 Si 0.817 3.183 12 H -0.191 1.191 13 H -0.198 1.198 14 H -0.194 1.194 15 C 0.322 3.678 16 O -0.518 6.518 17 C -0.332 4.332 18 C 0.094 3.906 19 N -0.259 5.259 20 C -0.123 4.123 21 S 0.604 5.396 22 C -0.332 4.332 23 C -0.103 4.103 24 N -0.163 5.163 25 C 0.340 3.660 26 O -0.436 6.436 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.152 0.848 30 H 0.147 0.853 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.190 0.810 34 H 0.277 0.723 35 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 4.554 15.753 1.876 16.505 hybrid contribution 0.750 -2.317 -0.368 2.463 sum 5.304 13.437 1.508 14.524 Atomic orbital electron populations 1.23319 0.75965 1.04923 1.01345 1.86420 1.24266 1.33473 1.84994 1.23726 0.92099 0.80947 0.69518 1.90449 1.67162 1.37563 1.47218 1.20550 0.87891 0.85074 1.03804 1.43413 1.56168 1.08300 1.06165 1.19560 1.30744 1.13414 0.83002 0.89535 1.26084 0.94422 0.96652 1.02568 1.69753 1.26049 1.28176 1.29134 0.84970 0.78528 0.78491 0.76290 1.19135 1.19764 1.19425 1.17468 0.80973 0.85916 0.83453 1.90586 1.58197 1.70611 1.32425 1.20979 0.95179 0.96204 1.20878 1.22875 0.98660 0.85932 0.83148 1.68178 1.14046 1.16515 1.27169 1.26899 0.88378 1.01388 0.95588 1.84014 1.00262 0.89309 1.65977 1.26083 1.04178 0.96235 1.06664 1.21491 0.90164 0.94879 1.03770 1.45244 1.11737 1.09176 1.50131 1.17027 0.89212 0.79935 0.79848 1.90843 1.47528 1.53832 1.51392 0.93038 0.93325 0.84792 0.85336 0.89970 0.91246 0.81009 0.72347 0.77916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.31 10.56 113.37 1.20 2.50 16 2 O -0.37 -16.63 10.57 -51.45 -0.54 -17.18 16 3 C 0.49 25.79 6.02 71.23 0.43 26.22 16 4 O -0.54 -30.64 15.73 21.98 0.35 -30.30 16 5 C 0.15 8.04 5.18 85.63 0.44 8.49 16 6 N -0.42 -23.84 2.17 -644.12 -1.40 -25.24 16 7 C -0.34 -18.50 8.98 84.07 0.76 -17.75 16 8 H 0.09 4.70 6.96 -2.91 -0.02 4.68 16 9 C 0.00 0.25 5.11 84.93 0.43 0.69 16 10 N -0.89 -46.84 8.80 21.67 0.19 -46.65 16 11 Si 0.99 40.63 29.57 68.60 2.03 42.65 16 12 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 13 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 14 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 15 C 0.53 30.61 6.43 86.44 0.56 31.17 16 16 O -0.63 -39.37 16.76 -4.41 -0.07 -39.44 16 17 C -0.32 -15.77 3.96 -19.88 -0.08 -15.85 16 18 C 0.25 10.72 10.95 85.16 0.93 11.65 16 19 N -0.53 -18.92 10.39 -196.81 -2.04 -20.96 16 20 C 0.24 6.91 8.07 179.28 1.45 8.36 16 21 S 0.35 4.78 23.14 -56.49 -1.31 3.47 16 22 C -0.20 -1.80 11.13 67.75 0.75 -1.04 16 23 C 0.02 0.44 10.52 83.76 0.88 1.32 16 24 N -0.45 -14.76 2.82 -483.49 -1.36 -16.12 16 25 C 0.54 24.46 7.55 84.75 0.64 25.10 16 26 O -0.56 -28.63 16.93 -4.87 -0.08 -28.72 16 27 H 0.05 1.76 8.13 -2.39 -0.02 1.74 16 28 H 0.05 1.74 8.13 -2.39 -0.02 1.72 16 29 H 0.13 3.28 8.14 -2.39 -0.02 3.26 16 30 H 0.13 6.67 6.39 -2.38 -0.02 6.65 16 31 H 0.08 4.23 7.53 -2.39 -0.02 4.22 16 32 H 0.28 13.78 8.31 -92.70 -0.77 13.01 16 33 H 0.17 7.57 8.06 -2.91 -0.02 7.54 16 34 H 0.26 -0.60 8.06 -2.91 -0.02 -0.62 16 35 H 0.20 3.64 8.00 -2.91 -0.02 3.62 16 Total: -1.00 -87.13 330.37 5.31 -81.82 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 1.17 Total: 15.81 kcal Atomic # 6 Polarization: 72.46 SS G_CDS: 8.39 Total: 80.85 kcal Atomic # 7 Polarization: -104.36 SS G_CDS: -4.61 Total: -108.97 kcal Atomic # 8 Polarization: -115.27 SS G_CDS: -0.35 Total: -115.63 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.65 kcal Atomic # 16 Polarization: 4.78 SS G_CDS: -1.31 Total: 3.47 kcal Total: -87.13 5.31 -81.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318755009.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.290 kcal (2) G-P(sol) polarization free energy of solvation -87.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds