Wall clock time and date at job start Tue Mar 31 2020 19:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99603 * 2 1 4 4 H 1.48497 * 109.47222 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47202 * 300.00256 * 3 2 1 6 6 H 1.48507 * 109.46873 * 60.00107 * 3 2 1 7 7 C 1.37869 * 120.00321 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99900 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00227 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47713 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00412 * 179.97438 * 10 9 7 12 12 O 1.21356 * 119.99660 * 0.02562 * 11 10 9 13 13 C 1.49308 * 119.99865 * 179.97438 * 11 10 9 14 14 O 1.21387 * 120.00147 * 0.02562 * 13 11 10 15 15 N 1.34776 * 119.99865 * 180.02562 * 13 11 10 16 16 C 1.38748 * 120.00065 * 180.02562 * 15 13 11 17 17 N 1.29680 * 124.94413 * 179.97438 * 16 15 13 18 18 C 1.31908 * 116.92633 * 180.02562 * 17 16 15 19 19 C 1.50697 * 122.71933 * 180.02562 * 18 17 16 20 20 C 1.53008 * 109.47165 * 304.97595 * 19 18 17 21 21 F 1.39896 * 109.46889 * 59.99548 * 20 19 18 22 22 F 1.39898 * 109.47565 * 179.97438 * 20 19 18 23 23 F 1.39903 * 109.46957 * 300.00020 * 20 19 18 24 24 C 1.33530 * 114.56616 * 0.02562 * 18 17 16 25 25 S 1.70968 * 124.94284 * 0.02562 * 16 15 13 26 26 H 0.96995 * 120.00985 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47337 * 59.99860 * 9 7 2 28 28 H 1.09010 * 109.47226 * 300.00185 * 9 7 2 29 29 H 0.97005 * 119.99577 * 359.97438 * 10 9 7 30 30 H 0.96995 * 120.00070 * 0.02562 * 15 13 11 31 31 H 1.08995 * 109.47109 * 64.97202 * 19 18 17 32 32 H 1.08999 * 109.47818 * 184.97833 * 19 18 17 33 33 H 1.08003 * 125.97344 * 180.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7540 -4.8833 0.0000 12 8 0.5609 -5.1051 0.0000 13 6 2.7244 -6.0181 -0.0006 14 8 3.9178 -5.7962 -0.0011 15 7 2.2752 -7.2888 -0.0006 16 6 3.1769 -8.3434 -0.0006 17 7 2.8517 -9.5987 -0.0001 18 6 3.8403 -10.4719 0.0003 19 6 3.6116 -11.9614 0.0003 20 6 2.7164 -12.3399 1.1820 21 9 1.4885 -11.6795 1.0671 22 9 2.5035 -13.7226 1.1818 23 9 3.3382 -11.9636 2.3774 24 6 5.0604 -9.9292 0.0008 25 16 4.8784 -8.1769 0.0000 26 1 -0.4851 0.8399 0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 0.6248 -2.5571 0.8897 29 1 3.1569 -3.4353 -0.0009 30 1 1.3216 -7.4661 -0.0006 31 1 3.1271 -12.2546 -0.9309 32 1 4.5683 -12.4761 0.0899 33 1 5.9953 -10.4699 0.0008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324964401.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:41 Heat of formation + Delta-G solvation = -173.845645 kcal Electronic energy + Delta-G solvation = -25521.430075 eV Core-core repulsion = 20873.523197 eV Total energy + Delta-G solvation = -4647.906878 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.049 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.25632 -47.82013 -47.65294 -41.04509 -40.00050 -38.38118 -35.76546 -34.45266 -32.64314 -32.45062 -29.22095 -27.98151 -26.01083 -24.53041 -23.39143 -22.24176 -21.24850 -20.00736 -18.90291 -18.65199 -18.52438 -18.30056 -17.53281 -16.78742 -16.58662 -16.26543 -15.84320 -15.22677 -15.01781 -14.78126 -14.61136 -14.49375 -14.28198 -14.16902 -13.90576 -13.86121 -13.80745 -13.44509 -13.35159 -13.20639 -12.47414 -12.18011 -12.09119 -12.05976 -11.22730 -11.20424 -11.02731 -11.00612 -10.41059 -10.02920 -9.57327 -9.49364 -9.46008 -8.94430 -8.62544 -8.25953 -6.29593 -4.37687 0.33496 0.83783 1.36674 1.51589 2.04960 2.24733 2.72970 3.18020 3.25757 3.28930 3.34628 3.48063 3.65948 3.76659 3.81812 4.19148 4.25004 4.65841 4.79674 4.84085 4.94523 5.07542 5.14292 5.38595 5.76125 6.39954 6.88934 6.94577 7.24779 7.29677 7.40438 7.49109 7.77019 8.17750 8.37474 8.71293 9.29151 10.80393 Molecular weight = 337.05amu Principal moments of inertia in cm(-1) A = 0.029806 B = 0.002164 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.194575 B =12938.459794 C =13579.518766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.548 4.548 8 H 0.068 0.932 9 C 0.245 3.755 10 N -0.664 5.664 11 C 0.499 3.501 12 O -0.525 6.525 13 C 0.509 3.491 14 O -0.487 6.487 15 N -0.600 5.600 16 C 0.250 3.750 17 N -0.501 5.501 18 C 0.076 3.924 19 C -0.084 4.084 20 C 0.457 3.543 21 F -0.167 7.167 22 F -0.187 7.187 23 F -0.183 7.183 24 C -0.301 4.301 25 S 0.269 5.731 26 H 0.268 0.732 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.406 0.594 30 H 0.438 0.562 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.720 -23.941 -0.479 26.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.586 4.586 8 H 0.086 0.914 9 C 0.126 3.874 10 N -0.313 5.313 11 C 0.277 3.723 12 O -0.403 6.403 13 C 0.291 3.709 14 O -0.360 6.360 15 N -0.251 5.251 16 C -0.117 4.117 17 N -0.224 5.224 18 C -0.058 4.058 19 C -0.125 4.125 20 C 0.402 3.598 21 F -0.148 7.148 22 F -0.169 7.169 23 F -0.165 7.165 24 C -0.443 4.443 25 S 0.521 5.479 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.241 0.759 30 H 0.279 0.721 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 10.583 -22.889 -0.451 25.222 hybrid contribution -0.068 -0.207 0.179 0.281 sum 10.515 -23.096 -0.273 25.378 Atomic orbital electron populations 1.69964 1.06128 1.27563 1.48424 1.24940 0.94964 0.99586 0.94370 0.86297 0.79887 0.82551 0.77846 1.19477 1.20693 1.20683 1.21205 0.93559 0.89939 1.53933 0.91404 1.19436 0.88061 0.81234 0.98668 1.46453 1.12974 1.04607 1.67290 1.19182 0.87629 0.84033 0.81479 1.90789 1.15266 1.84133 1.50117 1.21347 0.89836 0.83646 0.76067 1.90673 1.16334 1.83091 1.45882 1.42560 1.11245 1.02390 1.68930 1.23326 0.95503 0.89535 1.03350 1.66049 1.35870 0.98565 1.21887 1.18957 0.87700 0.94316 1.04832 1.21361 1.01925 0.91618 0.97568 1.20315 0.80734 0.74199 0.84519 1.93264 1.45113 1.80483 1.95962 1.93186 1.95366 1.31536 1.96791 1.93195 1.82439 1.91150 1.49708 1.27319 1.02242 1.00724 1.13979 1.85095 0.97690 0.99002 1.66157 0.92267 0.94427 0.94435 0.75890 0.72105 0.85692 0.85678 0.80211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.80 13.29 55.43 0.74 -24.06 16 2 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 20.12 29.54 -169.99 -5.02 15.09 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.55 -14.11 9.28 -34.44 -0.32 -14.43 16 8 H 0.07 1.65 7.60 -52.49 -0.40 1.25 16 9 C 0.25 6.02 5.43 -5.19 -0.03 5.99 16 10 N -0.66 -13.17 5.54 -61.95 -0.34 -13.51 16 11 C 0.50 9.17 7.88 -11.65 -0.09 9.08 16 12 O -0.52 -10.89 16.47 5.49 0.09 -10.80 16 13 C 0.51 7.76 7.85 -11.65 -0.09 7.67 16 14 O -0.49 -7.53 13.93 5.46 0.08 -7.45 16 15 N -0.60 -8.13 5.39 -13.55 -0.07 -8.21 16 16 C 0.25 3.25 8.18 -87.55 -0.72 2.53 16 17 N -0.50 -6.31 9.46 -11.33 -0.11 -6.42 16 18 C 0.08 0.75 5.81 -84.21 -0.49 0.26 16 19 C -0.08 -0.57 5.77 -27.88 -0.16 -0.73 16 20 C 0.46 4.29 3.15 37.16 0.12 4.41 16 21 F -0.17 -2.00 16.16 2.25 0.04 -1.96 16 22 F -0.19 -1.68 17.32 2.25 0.04 -1.64 16 23 F -0.18 -1.98 17.02 2.25 0.04 -1.94 16 24 C -0.30 -2.57 11.05 29.08 0.32 -2.25 16 25 S 0.27 2.95 20.21 -107.50 -2.17 0.78 16 26 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.04 1.00 8.14 -51.92 -0.42 0.58 16 29 H 0.41 7.30 7.79 -40.82 -0.32 6.98 16 30 H 0.44 5.62 8.29 -40.82 -0.34 5.28 16 31 H 0.12 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.12 0.44 8.03 -51.93 -0.42 0.02 16 33 H 0.18 0.92 8.06 -52.48 -0.42 0.50 16 LS Contribution 328.01 15.07 4.94 4.94 Total: -1.00 -30.31 328.01 -5.61 -35.92 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -2.30 Total: 5.08 kcal Atomic # 6 Polarization: 15.73 SS G_CDS: -1.56 Total: 14.17 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: 0.21 Total: -52.20 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: 0.17 Total: -18.25 kcal Atomic # 9 Polarization: -5.66 SS G_CDS: 0.11 Total: -5.54 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: 2.95 SS G_CDS: -2.17 Total: 0.78 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.31 -5.61 -35.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324964401.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.923 kcal (2) G-P(sol) polarization free energy of solvation -30.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds