Wall clock time and date at job start Tue Mar 31 2020 19:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99603 * 2 1 4 4 H 1.48497 * 109.47222 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47202 * 300.00256 * 3 2 1 6 6 H 1.48507 * 109.46873 * 60.00107 * 3 2 1 7 7 C 1.37869 * 120.00321 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99900 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00227 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47713 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00412 * 179.97438 * 10 9 7 12 12 O 1.21356 * 119.99660 * 0.02562 * 11 10 9 13 13 C 1.49308 * 119.99865 * 179.97438 * 11 10 9 14 14 O 1.21387 * 120.00147 * 0.02562 * 13 11 10 15 15 N 1.34776 * 119.99865 * 180.02562 * 13 11 10 16 16 C 1.38748 * 120.00065 * 180.02562 * 15 13 11 17 17 N 1.29680 * 124.94413 * 179.97438 * 16 15 13 18 18 C 1.31908 * 116.92633 * 180.02562 * 17 16 15 19 19 C 1.50697 * 122.71933 * 180.02562 * 18 17 16 20 20 C 1.53008 * 109.47165 * 304.97595 * 19 18 17 21 21 F 1.39896 * 109.46889 * 59.99548 * 20 19 18 22 22 F 1.39898 * 109.47565 * 179.97438 * 20 19 18 23 23 F 1.39903 * 109.46957 * 300.00020 * 20 19 18 24 24 C 1.33530 * 114.56616 * 0.02562 * 18 17 16 25 25 S 1.70968 * 124.94284 * 0.02562 * 16 15 13 26 26 H 0.96995 * 120.00985 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47337 * 59.99860 * 9 7 2 28 28 H 1.09010 * 109.47226 * 300.00185 * 9 7 2 29 29 H 0.97005 * 119.99577 * 359.97438 * 10 9 7 30 30 H 0.96995 * 120.00070 * 0.02562 * 15 13 11 31 31 H 1.08995 * 109.47109 * 64.97202 * 19 18 17 32 32 H 1.08999 * 109.47818 * 184.97833 * 19 18 17 33 33 H 1.08003 * 125.97344 * 180.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7540 -4.8833 0.0000 12 8 0.5609 -5.1051 0.0000 13 6 2.7244 -6.0181 -0.0006 14 8 3.9178 -5.7962 -0.0011 15 7 2.2752 -7.2888 -0.0006 16 6 3.1769 -8.3434 -0.0006 17 7 2.8517 -9.5987 -0.0001 18 6 3.8403 -10.4719 0.0003 19 6 3.6116 -11.9614 0.0003 20 6 2.7164 -12.3399 1.1820 21 9 1.4885 -11.6795 1.0671 22 9 2.5035 -13.7226 1.1818 23 9 3.3382 -11.9636 2.3774 24 6 5.0604 -9.9292 0.0008 25 16 4.8784 -8.1769 0.0000 26 1 -0.4851 0.8399 0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 0.6248 -2.5571 0.8897 29 1 3.1569 -3.4353 -0.0009 30 1 1.3216 -7.4661 -0.0006 31 1 3.1271 -12.2546 -0.9309 32 1 4.5683 -12.4761 0.0899 33 1 5.9953 -10.4699 0.0008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324964401.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:40 Heat of formation + Delta-G solvation = -195.644023 kcal Electronic energy + Delta-G solvation = -25522.375323 eV Core-core repulsion = 20873.523197 eV Total energy + Delta-G solvation = -4648.852127 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.049 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.00620 -48.55193 -48.46210 -42.25976 -40.95955 -39.83588 -36.98454 -36.07751 -34.41596 -33.33523 -30.12361 -29.68143 -27.29105 -25.59839 -24.63390 -23.57635 -22.38221 -21.32313 -19.95857 -19.52359 -19.38476 -19.27344 -18.45130 -18.24738 -17.68628 -17.48538 -17.28646 -16.92202 -16.15330 -16.10711 -15.59697 -15.41261 -15.18732 -15.05274 -14.94250 -14.93162 -14.66124 -14.61707 -14.21769 -14.10754 -13.99111 -13.74809 -13.41903 -13.06731 -12.94280 -12.76697 -12.27551 -12.16060 -12.07147 -11.50200 -10.93397 -10.89808 -10.86787 -10.35087 -10.11724 -9.48042 -8.31507 -6.47415 -0.60807 -0.02544 0.18909 0.65393 0.93244 1.40118 1.45277 1.45945 1.59342 1.90420 2.06515 2.28958 2.44070 2.88232 3.02546 3.04589 3.16344 3.27821 3.44231 4.04751 4.22101 4.46730 4.49717 4.50777 4.93738 4.95836 5.16359 5.16742 5.33445 5.54575 5.77348 6.09351 6.46914 6.56299 6.60635 6.92074 7.25442 8.80242 Molecular weight = 337.05amu Principal moments of inertia in cm(-1) A = 0.029806 B = 0.002164 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.194575 B =12938.459794 C =13579.518766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.010 3.990 3 Si 0.982 3.018 4 H -0.256 1.256 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.559 4.559 8 H 0.083 0.917 9 C 0.262 3.738 10 N -0.665 5.665 11 C 0.504 3.496 12 O -0.551 6.551 13 C 0.525 3.475 14 O -0.489 6.489 15 N -0.593 5.593 16 C 0.215 3.785 17 N -0.513 5.513 18 C 0.052 3.948 19 C -0.076 4.076 20 C 0.451 3.549 21 F -0.188 7.188 22 F -0.186 7.186 23 F -0.194 7.194 24 C -0.267 4.267 25 S 0.265 5.735 26 H 0.270 0.730 27 H 0.008 0.992 28 H 0.007 0.993 29 H 0.417 0.583 30 H 0.438 0.562 31 H 0.142 0.858 32 H 0.166 0.834 33 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.615 -25.315 -0.796 28.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.805 3.195 4 H -0.179 1.179 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.597 4.597 8 H 0.101 0.899 9 C 0.140 3.860 10 N -0.315 5.315 11 C 0.283 3.717 12 O -0.431 6.431 13 C 0.305 3.695 14 O -0.362 6.362 15 N -0.244 5.244 16 C -0.151 4.151 17 N -0.236 5.236 18 C -0.080 4.080 19 C -0.116 4.116 20 C 0.396 3.604 21 F -0.170 7.170 22 F -0.167 7.167 23 F -0.176 7.176 24 C -0.408 4.408 25 S 0.516 5.484 26 H 0.079 0.921 27 H 0.026 0.974 28 H 0.025 0.975 29 H 0.254 0.746 30 H 0.279 0.721 31 H 0.160 0.840 32 H 0.184 0.816 33 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 13.509 -24.327 -0.769 27.837 hybrid contribution -0.950 -0.003 0.296 0.995 sum 12.559 -24.330 -0.473 27.385 Atomic orbital electron populations 1.70099 1.07998 1.28677 1.49621 1.25951 0.95773 1.03574 0.93769 0.85150 0.79071 0.77559 0.77716 1.17934 1.20420 1.20456 1.21587 0.94395 0.90351 1.53341 0.89897 1.18902 0.88295 0.82901 0.95883 1.46119 1.12745 1.04387 1.68244 1.19617 0.87868 0.84421 0.79821 1.90771 1.16865 1.84718 1.50702 1.20276 0.88813 0.83383 0.77017 1.90684 1.15780 1.83295 1.46424 1.42290 1.11540 1.02120 1.68433 1.23415 0.96074 0.89477 1.06090 1.66036 1.37632 0.98818 1.21103 1.19458 0.87622 0.95422 1.05539 1.21552 1.03483 0.89741 0.96781 1.20786 0.80407 0.74074 0.85098 1.93223 1.46701 1.80971 1.96060 1.93187 1.95370 1.31347 1.96800 1.93172 1.82462 1.91270 1.50659 1.27749 1.03457 0.98995 1.10591 1.85056 0.96340 1.01386 1.65621 0.92078 0.97377 0.97461 0.74623 0.72100 0.84039 0.81607 0.76043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.22 13.29 21.44 0.28 -52.93 16 2 C 0.01 0.52 5.46 84.65 0.46 0.98 16 3 Si 0.98 41.03 29.54 68.60 2.03 43.06 16 4 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 5 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 6 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 7 C -0.56 -29.04 9.28 25.60 0.24 -28.80 16 8 H 0.08 3.96 7.60 -2.91 -0.02 3.94 16 9 C 0.26 13.36 5.43 85.63 0.46 13.82 16 10 N -0.66 -26.99 5.54 -468.28 -2.59 -29.58 16 11 C 0.50 19.00 7.88 87.23 0.69 19.68 16 12 O -0.55 -23.82 16.47 -3.26 -0.05 -23.88 16 13 C 0.52 16.01 7.85 87.23 0.68 16.69 16 14 O -0.49 -14.76 13.93 -3.36 -0.05 -14.80 16 15 N -0.59 -16.13 5.39 -315.13 -1.70 -17.83 16 16 C 0.22 5.39 8.18 179.28 1.47 6.86 16 17 N -0.51 -12.23 9.46 -189.75 -1.80 -14.03 16 18 C 0.05 0.88 5.81 41.48 0.24 1.12 16 19 C -0.08 -0.76 5.77 29.85 0.17 -0.59 16 20 C 0.45 7.62 3.15 71.98 0.23 7.84 16 21 F -0.19 -4.40 16.16 44.97 0.73 -3.67 16 22 F -0.19 -2.98 17.32 44.97 0.78 -2.20 16 23 F -0.19 -3.86 17.02 44.97 0.77 -3.10 16 24 C -0.27 -3.52 11.05 66.75 0.74 -2.78 16 25 S 0.26 5.27 20.21 -56.49 -1.14 4.12 16 26 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 27 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 29 H 0.42 15.00 7.79 -92.70 -0.72 14.27 16 30 H 0.44 11.57 8.29 -92.71 -0.77 10.80 16 31 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.17 0.28 8.03 -2.39 -0.02 0.26 16 33 H 0.22 0.95 8.06 -2.91 -0.02 0.93 16 Total: -1.00 -67.46 328.01 2.37 -65.09 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -0.26 Total: 14.93 kcal Atomic # 6 Polarization: 29.44 SS G_CDS: 5.38 Total: 34.82 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -5.80 Total: -114.37 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -0.10 Total: -38.68 kcal Atomic # 9 Polarization: -11.24 SS G_CDS: 2.27 Total: -8.97 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Atomic # 16 Polarization: 5.27 SS G_CDS: -1.14 Total: 4.12 kcal Total: -67.46 2.37 -65.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324964401.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.552 kcal (2) G-P(sol) polarization free energy of solvation -67.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds