Wall clock time and date at job start Tue Mar 31 2020 20:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47209 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46490 * 190.81698 * 3 2 1 5 5 C 1.46501 * 119.99881 * 85.00282 * 4 3 2 6 6 C 1.55880 * 110.82481 * 299.99574 * 5 4 3 7 7 S 1.83092 * 82.48240 * 94.35058 * 6 5 4 8 8 C 1.55968 * 110.82125 * 53.59986 * 5 4 3 9 9 S 1.65598 * 120.00076 * 264.99714 * 4 3 2 10 10 O 1.42101 * 106.40214 * 23.54611 * 9 4 3 11 11 O 1.42104 * 106.40283 * 156.46372 * 9 4 3 12 12 C 1.76199 * 107.22026 * 270.00615 * 9 4 3 13 13 C 1.38638 * 119.74691 * 269.72647 * 12 9 4 14 14 C 1.37620 * 120.24496 * 179.72033 * 13 12 9 15 15 C 1.40712 * 119.74590 * 0.57517 * 14 13 12 16 16 C 1.41400 * 120.24558 * 179.68238 * 15 14 13 17 17 H 1.07995 * 119.99804 * 204.40377 * 16 15 14 18 18 C 1.39941 * 119.99617 * 24.40364 * 16 15 14 19 19 N 1.30817 * 120.00334 * 17.84956 * 18 16 15 20 20 Si 1.86803 * 119.99634 * 197.84708 * 18 16 15 21 21 H 1.48499 * 109.47006 * 59.99936 * 20 18 16 22 22 H 1.48495 * 109.47194 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47323 * 300.00184 * 20 18 16 24 24 C 1.40718 * 119.51283 * 359.69832 * 15 14 13 25 25 C 1.37622 * 119.74101 * 0.02562 * 24 15 14 26 26 H 4.40634 * 5.51378 * 180.02562 * 4 1 2 27 27 H 1.08996 * 109.47110 * 70.82256 * 3 2 1 28 28 H 1.08993 * 109.47571 * 310.81563 * 3 2 1 29 29 H 1.09004 * 110.39805 * 176.81784 * 5 4 3 30 30 H 1.08997 * 114.38020 * 340.93904 * 6 5 4 31 31 H 1.08996 * 114.38343 * 207.76201 * 6 5 4 32 32 H 1.09000 * 114.34720 * 152.24808 * 8 5 4 33 33 H 1.09002 * 114.43521 * 19.05569 * 8 5 4 34 34 H 1.07998 * 119.87539 * 359.97438 * 13 12 9 35 35 H 1.07999 * 120.12514 * 180.28028 * 14 13 12 36 36 H 0.96999 * 119.99792 * 179.97438 * 19 18 16 37 37 H 1.08002 * 120.13243 * 179.97438 * 24 15 14 38 38 H 1.08005 * 119.87280 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1337 1.3577 0.2592 5 6 3.2733 1.8350 1.6372 6 6 1.9010 1.8051 2.3758 7 16 2.5059 0.1677 2.9281 8 6 4.1437 0.8519 2.4790 9 16 3.5271 2.3518 -1.0053 10 8 2.8020 1.8756 -2.1308 11 8 3.4199 3.6824 -0.5181 12 6 5.2320 2.0893 -1.3645 13 6 6.1949 2.8607 -0.7323 14 6 7.5297 2.6605 -1.0008 15 6 7.9149 1.6765 -1.9300 16 6 9.2831 1.4664 -2.2188 17 1 9.5749 1.0313 -3.1632 18 6 10.2588 1.8223 -1.2810 19 7 9.9251 2.0149 -0.0308 20 14 12.0379 2.0223 -1.8143 21 1 12.1284 3.0853 -2.8473 22 1 12.8669 2.3993 -0.6414 23 1 12.5327 0.7408 -2.3782 24 6 6.9286 0.9033 -2.5699 25 6 5.6000 1.1170 -2.2816 26 1 -1.0501 -0.0005 0.0001 27 1 3.0096 -0.3367 -0.9706 28 1 3.0098 -0.6708 0.7777 29 1 3.6987 2.8385 1.6504 30 1 1.0351 1.7655 1.7150 31 1 1.8033 2.5412 3.1738 32 1 4.6779 1.3199 3.3059 33 1 4.7651 0.1799 1.8871 34 1 5.8965 3.6189 -0.0234 35 1 8.2784 3.2595 -0.5038 36 1 10.6016 2.2612 0.6192 37 1 7.2130 0.1456 -3.2850 38 1 4.8412 0.5251 -2.7718 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330525335.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:32 Heat of formation + Delta-G solvation = 30.909454 kcal Electronic energy + Delta-G solvation = -24698.464608 eV Core-core repulsion = 21147.586531 eV Total energy + Delta-G solvation = -3550.878076 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 337.059 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -38.03480 -37.64684 -36.70121 -35.23494 -34.11592 -33.45296 -31.33194 -30.33188 -29.54304 -27.12738 -26.55856 -25.87858 -21.60293 -21.39110 -21.01325 -19.14222 -17.90466 -17.75578 -17.57833 -16.69791 -16.46765 -15.90185 -15.56777 -14.70426 -14.54093 -14.17236 -13.77260 -13.45131 -13.29030 -13.21019 -13.12385 -13.05935 -12.75152 -12.47920 -12.25350 -11.87128 -11.84077 -11.53831 -11.52536 -11.43072 -11.35483 -11.29142 -10.96908 -10.49949 -10.32584 -9.99578 -9.83907 -9.74689 -9.56757 -9.42759 -9.11307 -8.03547 -7.78268 -7.61134 -7.21758 -4.87317 0.99267 1.60072 2.02000 2.17583 2.79622 2.84200 2.85508 2.86310 2.91965 3.05076 3.57766 3.61190 4.16209 4.23202 4.33362 4.43493 4.66371 4.79862 5.01883 5.14642 5.23279 5.33241 5.48043 5.56692 5.60850 5.78801 5.98063 6.02698 6.06281 6.13982 6.51877 6.61304 6.68346 6.88713 6.97284 7.26298 7.35037 7.55450 7.69773 7.76898 7.89443 8.24372 8.44004 8.57450 9.69390 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.017864 B = 0.003665 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.025571 B = 7637.891991 C = 8311.646310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.172 4.172 3 C 0.224 3.776 4 N -0.983 5.983 5 C 0.124 3.876 6 C -0.074 4.074 7 S -0.314 6.314 8 C -0.071 4.071 9 S 2.685 3.315 10 O -0.973 6.973 11 O -0.978 6.978 12 C -0.787 4.787 13 C -0.016 4.016 14 C -0.181 4.181 15 C 0.139 3.861 16 C -0.433 4.433 17 H 0.088 0.912 18 C 0.073 3.927 19 N -0.764 5.764 20 Si 0.917 3.083 21 H -0.259 1.259 22 H -0.274 1.274 23 H -0.261 1.261 24 C -0.237 4.237 25 C 0.001 3.999 26 H 0.213 0.787 27 H 0.103 0.897 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.122 0.878 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.290 0.710 37 H 0.101 0.899 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.562 -1.980 5.531 9.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.173 4.173 3 C 0.099 3.901 4 N -0.813 5.813 5 C 0.015 3.985 6 C -0.224 4.224 7 S -0.089 6.089 8 C -0.221 4.221 9 S 2.786 3.214 10 O -0.963 6.963 11 O -0.969 6.969 12 C -0.884 4.884 13 C -0.036 4.036 14 C -0.202 4.202 15 C 0.136 3.864 16 C -0.460 4.460 17 H 0.106 0.894 18 C -0.150 4.150 19 N -0.386 5.386 20 Si 0.740 3.260 21 H -0.183 1.183 22 H -0.199 1.199 23 H -0.185 1.185 24 C -0.258 4.258 25 C -0.019 4.019 26 H 0.230 0.770 27 H 0.121 0.879 28 H 0.134 0.866 29 H 0.136 0.864 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.135 0.865 33 H 0.140 0.860 34 H 0.120 0.880 35 H 0.141 0.859 36 H 0.101 0.899 37 H 0.119 0.881 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.589 -2.503 5.871 10.701 hybrid contribution 1.695 0.687 -0.349 1.862 sum -6.894 -1.816 5.522 9.018 Atomic orbital electron populations 1.24766 0.95771 0.99679 1.02987 1.23494 0.94819 1.00508 0.98518 1.18336 0.83899 0.84333 1.03554 1.57922 1.79484 1.26234 1.17699 1.22587 0.92846 0.99971 0.83091 1.25287 1.00944 0.94276 1.01897 1.88383 1.08462 1.23409 1.88628 1.25318 0.95472 0.99569 1.01764 1.01674 0.75178 0.72553 0.71977 1.93502 1.72412 1.81453 1.48975 1.93478 1.87920 1.34720 1.80766 1.29108 1.20162 1.18445 1.20637 1.20222 0.93241 0.94812 0.95325 1.21326 0.94122 1.00922 1.03782 1.17850 0.92759 0.87529 0.88288 1.19951 0.90765 1.33064 1.02192 0.89391 1.26131 1.02749 0.91968 0.94127 1.69794 1.37426 1.29097 1.02266 0.86188 0.79790 0.80385 0.79589 1.18308 1.19851 1.18517 1.21056 0.92520 1.04223 1.07951 1.20162 0.96068 0.92990 0.92682 0.76985 0.87948 0.86564 0.86422 0.86692 0.86914 0.86547 0.85971 0.87992 0.85947 0.89858 0.88123 0.87786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.72 18.83 29.55 0.56 -2.16 16 2 C -0.17 -2.45 11.11 -37.12 -0.41 -2.86 16 3 C 0.22 3.15 5.03 -6.82 -0.03 3.11 16 4 N -0.98 -14.81 2.83 -144.68 -0.41 -15.22 16 5 C 0.12 1.62 3.60 -64.80 -0.23 1.39 16 6 C -0.07 -0.86 8.21 38.70 0.32 -0.55 16 7 S -0.31 -3.91 20.74 -107.50 -2.23 -6.14 16 8 C -0.07 -0.84 8.24 38.74 0.32 -0.52 16 9 S 2.68 50.31 5.63 -107.50 -0.61 49.70 16 10 O -0.97 -20.16 16.23 -57.17 -0.93 -21.09 16 11 O -0.98 -19.94 15.88 -57.17 -0.91 -20.85 16 12 C -0.79 -16.41 6.00 -39.29 -0.24 -16.64 16 13 C -0.02 -0.34 9.49 -39.66 -0.38 -0.72 16 14 C -0.18 -4.30 8.70 -38.87 -0.34 -4.64 16 15 C 0.14 3.38 5.58 -106.82 -0.60 2.78 16 16 C -0.43 -10.19 9.05 -37.74 -0.34 -10.53 16 17 H 0.09 1.96 7.91 -52.49 -0.42 1.55 16 18 C 0.07 1.60 5.14 -17.35 -0.09 1.51 16 19 N -0.76 -17.24 10.95 55.55 0.61 -16.63 16 20 Si 0.92 16.38 29.60 -169.99 -5.03 11.35 16 21 H -0.26 -4.65 7.11 56.52 0.40 -4.24 16 22 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 23 H -0.26 -4.61 7.11 56.52 0.40 -4.21 16 24 C -0.24 -5.34 9.80 -38.87 -0.38 -5.72 16 25 C 0.00 0.03 9.49 -39.66 -0.38 -0.35 16 26 H 0.21 1.93 7.80 -54.08 -0.42 1.51 16 27 H 0.10 1.42 7.61 -51.93 -0.40 1.02 16 28 H 0.12 1.48 5.51 -50.80 -0.28 1.20 16 29 H 0.12 1.54 7.04 -51.93 -0.37 1.17 16 30 H 0.11 1.42 6.32 -51.93 -0.33 1.09 16 31 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.12 1.48 7.87 -51.93 -0.41 1.07 16 34 H 0.10 2.04 7.59 -52.49 -0.40 1.64 16 35 H 0.12 2.94 6.16 -52.49 -0.32 2.62 16 36 H 0.29 5.89 8.30 -40.82 -0.34 5.55 16 37 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 38 H 0.10 1.98 7.60 -52.48 -0.40 1.58 16 LS Contribution 345.48 15.07 5.21 5.21 Total: -1.00 -28.69 345.48 -10.65 -39.35 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -4.14 Total: 10.20 kcal Atomic # 6 Polarization: -33.66 SS G_CDS: -2.22 Total: -35.88 kcal Atomic # 7 Polarization: -32.05 SS G_CDS: 0.20 Total: -31.85 kcal Atomic # 8 Polarization: -40.10 SS G_CDS: -1.84 Total: -41.94 kcal Atomic # 14 Polarization: 16.38 SS G_CDS: -5.03 Total: 11.35 kcal Atomic # 16 Polarization: 46.39 SS G_CDS: -2.83 Total: 43.56 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.69 -10.65 -39.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330525335.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.258 kcal (2) G-P(sol) polarization free energy of solvation -28.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds