Wall clock time and date at job start Tue Mar 31 2020 20:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47209 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46490 * 190.81698 * 3 2 1 5 5 C 1.46501 * 119.99881 * 85.00282 * 4 3 2 6 6 C 1.55880 * 110.82481 * 299.99574 * 5 4 3 7 7 S 1.83092 * 82.48240 * 94.35058 * 6 5 4 8 8 C 1.55968 * 110.82125 * 53.59986 * 5 4 3 9 9 S 1.65598 * 120.00076 * 264.99714 * 4 3 2 10 10 O 1.42101 * 106.40214 * 23.54611 * 9 4 3 11 11 O 1.42104 * 106.40283 * 156.46372 * 9 4 3 12 12 C 1.76199 * 107.22026 * 270.00615 * 9 4 3 13 13 C 1.38638 * 119.74691 * 269.72647 * 12 9 4 14 14 C 1.37620 * 120.24496 * 179.72033 * 13 12 9 15 15 C 1.40712 * 119.74590 * 0.57517 * 14 13 12 16 16 C 1.41400 * 120.24558 * 179.68238 * 15 14 13 17 17 H 1.07995 * 119.99804 * 204.40377 * 16 15 14 18 18 C 1.39941 * 119.99617 * 24.40364 * 16 15 14 19 19 N 1.30817 * 120.00334 * 17.84956 * 18 16 15 20 20 Si 1.86803 * 119.99634 * 197.84708 * 18 16 15 21 21 H 1.48499 * 109.47006 * 59.99936 * 20 18 16 22 22 H 1.48495 * 109.47194 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47323 * 300.00184 * 20 18 16 24 24 C 1.40718 * 119.51283 * 359.69832 * 15 14 13 25 25 C 1.37622 * 119.74101 * 0.02562 * 24 15 14 26 26 H 4.40634 * 5.51378 * 180.02562 * 4 1 2 27 27 H 1.08996 * 109.47110 * 70.82256 * 3 2 1 28 28 H 1.08993 * 109.47571 * 310.81563 * 3 2 1 29 29 H 1.09004 * 110.39805 * 176.81784 * 5 4 3 30 30 H 1.08997 * 114.38020 * 340.93904 * 6 5 4 31 31 H 1.08996 * 114.38343 * 207.76201 * 6 5 4 32 32 H 1.09000 * 114.34720 * 152.24808 * 8 5 4 33 33 H 1.09002 * 114.43521 * 19.05569 * 8 5 4 34 34 H 1.07998 * 119.87539 * 359.97438 * 13 12 9 35 35 H 1.07999 * 120.12514 * 180.28028 * 14 13 12 36 36 H 0.96999 * 119.99792 * 179.97438 * 19 18 16 37 37 H 1.08002 * 120.13243 * 179.97438 * 24 15 14 38 38 H 1.08005 * 119.87280 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1337 1.3577 0.2592 5 6 3.2733 1.8350 1.6372 6 6 1.9010 1.8051 2.3758 7 16 2.5059 0.1677 2.9281 8 6 4.1437 0.8519 2.4790 9 16 3.5271 2.3518 -1.0053 10 8 2.8020 1.8756 -2.1308 11 8 3.4199 3.6824 -0.5181 12 6 5.2320 2.0893 -1.3645 13 6 6.1949 2.8607 -0.7323 14 6 7.5297 2.6605 -1.0008 15 6 7.9149 1.6765 -1.9300 16 6 9.2831 1.4664 -2.2188 17 1 9.5749 1.0313 -3.1632 18 6 10.2588 1.8223 -1.2810 19 7 9.9251 2.0149 -0.0308 20 14 12.0379 2.0223 -1.8143 21 1 12.1284 3.0853 -2.8473 22 1 12.8669 2.3993 -0.6414 23 1 12.5327 0.7408 -2.3782 24 6 6.9286 0.9033 -2.5699 25 6 5.6000 1.1170 -2.2816 26 1 -1.0501 -0.0005 0.0001 27 1 3.0096 -0.3367 -0.9706 28 1 3.0098 -0.6708 0.7777 29 1 3.6987 2.8385 1.6504 30 1 1.0351 1.7655 1.7150 31 1 1.8033 2.5412 3.1738 32 1 4.6779 1.3199 3.3059 33 1 4.7651 0.1799 1.8871 34 1 5.8965 3.6189 -0.0234 35 1 8.2784 3.2595 -0.5038 36 1 10.6016 2.2612 0.6192 37 1 7.2130 0.1456 -3.2850 38 1 4.8412 0.5251 -2.7718 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330525335.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:32 Heat of formation + Delta-G solvation = 14.906666 kcal Electronic energy + Delta-G solvation = -24699.158541 eV Core-core repulsion = 21147.586531 eV Total energy + Delta-G solvation = -3551.572009 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 337.059 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.37432 -39.13218 -38.28821 -36.84063 -35.79861 -34.48131 -32.42799 -32.05243 -31.28036 -28.09860 -27.70807 -27.52973 -23.28326 -23.00469 -22.27506 -20.38586 -19.42812 -19.19738 -18.86396 -18.19177 -17.53236 -17.22332 -17.07685 -16.14237 -15.86450 -15.57478 -15.22811 -14.94480 -14.80294 -14.27439 -14.20660 -14.07391 -13.98814 -13.94489 -13.73646 -13.58160 -13.14512 -13.02947 -12.92446 -12.89660 -12.86872 -12.79640 -12.58298 -12.01281 -11.55982 -11.40084 -11.36735 -11.21371 -10.96528 -10.45342 -10.36017 -9.77468 -9.53876 -8.86680 -8.57518 -6.63863 -0.49660 0.48640 0.65668 1.07538 1.08772 1.37254 1.44421 1.50421 1.68834 2.02241 2.12275 2.28610 2.53348 2.87273 3.22113 3.40477 3.43009 3.53808 3.65956 3.89620 4.02118 4.31295 4.32198 4.38381 4.54325 4.58436 4.62959 4.77054 4.88546 4.92764 4.98713 5.10150 5.15473 5.24547 5.44789 5.54233 5.60884 5.78385 5.94664 6.16570 6.49957 6.69390 6.76036 6.81895 8.07804 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.017864 B = 0.003665 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.025571 B = 7637.891991 C = 8311.646310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.212 4.212 3 C 0.221 3.779 4 N -0.975 5.975 5 C 0.112 3.888 6 C -0.063 4.063 7 S -0.331 6.331 8 C -0.064 4.064 9 S 2.714 3.286 10 O -0.991 6.991 11 O -0.993 6.993 12 C -0.794 4.794 13 C -0.017 4.017 14 C -0.204 4.204 15 C 0.113 3.887 16 C -0.465 4.465 17 H 0.090 0.910 18 C 0.038 3.962 19 N -0.790 5.790 20 Si 0.987 3.013 21 H -0.260 1.260 22 H -0.263 1.263 23 H -0.256 1.256 24 C -0.255 4.255 25 C -0.002 4.002 26 H 0.245 0.755 27 H 0.100 0.900 28 H 0.128 0.872 29 H 0.118 0.882 30 H 0.110 0.890 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.299 0.701 37 H 0.110 0.890 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.288 -2.069 6.351 10.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.214 4.214 3 C 0.096 3.904 4 N -0.808 5.808 5 C 0.003 3.997 6 C -0.213 4.213 7 S -0.107 6.107 8 C -0.213 4.213 9 S 2.813 3.187 10 O -0.982 6.982 11 O -0.984 6.984 12 C -0.888 4.888 13 C -0.037 4.037 14 C -0.224 4.224 15 C 0.109 3.891 16 C -0.492 4.492 17 H 0.108 0.892 18 C -0.182 4.182 19 N -0.413 5.413 20 Si 0.807 3.193 21 H -0.184 1.184 22 H -0.187 1.187 23 H -0.180 1.180 24 C -0.276 4.276 25 C -0.021 4.021 26 H 0.261 0.739 27 H 0.118 0.882 28 H 0.145 0.855 29 H 0.136 0.864 30 H 0.128 0.872 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.110 0.890 37 H 0.128 0.872 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.296 -2.596 6.683 11.740 hybrid contribution 1.723 0.694 -0.545 1.936 sum -7.573 -1.902 6.138 9.932 Atomic orbital electron populations 1.25605 0.96646 0.97762 1.01253 1.23658 0.95296 1.02260 1.00176 1.18437 0.84478 0.83570 1.03882 1.57517 1.79096 1.26415 1.17822 1.22914 0.94342 1.00288 0.82113 1.25353 0.99623 0.94230 1.02087 1.88460 1.09156 1.24457 1.88593 1.25360 0.95110 0.98939 1.01925 1.00762 0.73786 0.72193 0.71944 1.93473 1.72247 1.81791 1.50672 1.93452 1.87733 1.36125 1.81095 1.29536 1.21678 1.17533 1.20034 1.20421 0.92843 0.95060 0.95365 1.21338 0.94793 1.01558 1.04760 1.18183 0.93711 0.88172 0.89014 1.20222 0.91319 1.34702 1.02973 0.89176 1.26917 1.06476 0.91033 0.93785 1.69816 1.39085 1.29199 1.03166 0.85151 0.74654 0.80240 0.79272 1.18439 1.18723 1.17998 1.21266 0.93052 1.04695 1.08541 1.20433 0.96092 0.93114 0.92511 0.73855 0.88242 0.85455 0.86376 0.87159 0.84279 0.84465 0.86596 0.86487 0.86998 0.88967 0.87173 0.85804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.46 18.83 74.32 1.40 -3.06 16 2 C -0.21 -5.70 11.11 31.13 0.35 -5.36 16 3 C 0.22 5.98 5.03 84.58 0.43 6.41 16 4 N -0.98 -28.26 2.83 -611.66 -1.73 -29.99 16 5 C 0.11 2.74 3.60 47.02 0.17 2.91 16 6 C -0.06 -1.33 8.21 72.98 0.60 -0.73 16 7 S -0.33 -7.66 20.74 -56.49 -1.17 -8.83 16 8 C -0.06 -1.39 8.24 73.01 0.60 -0.79 16 9 S 2.71 99.40 5.63 -56.49 -0.32 99.08 16 10 O -0.99 -40.18 16.23 -128.00 -2.08 -42.26 16 11 O -0.99 -39.45 15.88 -128.00 -2.03 -41.48 16 12 C -0.79 -33.03 6.00 22.46 0.13 -32.90 16 13 C -0.02 -0.74 9.49 22.22 0.21 -0.53 16 14 C -0.20 -9.96 8.70 22.73 0.20 -9.76 16 15 C 0.11 5.62 5.58 -21.29 -0.12 5.50 16 16 C -0.47 -22.49 9.05 23.46 0.21 -22.28 16 17 H 0.09 4.13 7.91 -2.91 -0.02 4.11 16 18 C 0.04 1.69 5.14 85.26 0.44 2.13 16 19 N -0.79 -36.16 10.95 21.82 0.24 -35.92 16 20 Si 0.99 33.36 29.60 68.60 2.03 35.39 16 21 H -0.26 -8.77 7.11 99.48 0.71 -8.07 16 22 H -0.26 -8.35 7.11 99.48 0.71 -7.64 16 23 H -0.26 -8.38 7.11 99.48 0.71 -7.68 16 24 C -0.26 -11.74 9.80 22.73 0.22 -11.52 16 25 C 0.00 -0.07 9.49 22.22 0.21 0.14 16 26 H 0.25 3.56 7.80 -4.41 -0.03 3.53 16 27 H 0.10 2.70 7.61 -2.39 -0.02 2.68 16 28 H 0.13 3.12 5.51 -3.11 -0.02 3.10 16 29 H 0.12 2.90 7.04 -2.39 -0.02 2.88 16 30 H 0.11 2.46 6.32 -2.39 -0.02 2.45 16 31 H 0.14 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.14 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.12 2.69 7.87 -2.39 -0.02 2.68 16 34 H 0.12 4.67 7.59 -2.91 -0.02 4.65 16 35 H 0.11 5.58 6.16 -2.91 -0.02 5.56 16 36 H 0.30 12.17 8.30 -92.71 -0.77 11.40 16 37 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 38 H 0.12 4.66 7.60 -2.91 -0.02 4.64 16 Total: -1.00 -61.42 345.48 1.07 -60.35 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: 1.08 Total: 33.49 kcal Atomic # 6 Polarization: -74.88 SS G_CDS: 5.05 Total: -69.83 kcal Atomic # 7 Polarization: -64.42 SS G_CDS: -1.49 Total: -65.91 kcal Atomic # 8 Polarization: -79.63 SS G_CDS: -4.11 Total: -83.74 kcal Atomic # 14 Polarization: 33.36 SS G_CDS: 2.03 Total: 35.39 kcal Atomic # 16 Polarization: 91.74 SS G_CDS: -1.49 Total: 90.25 kcal Total: -61.42 1.07 -60.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330525335.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.256 kcal (2) G-P(sol) polarization free energy of solvation -61.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds