Wall clock time and date at job start Tue Mar 31 2020 19:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 117.00024 * 2 1 4 4 O 1.20822 * 120.00148 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00028 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.45862 * 25.52469 * 5 3 2 7 7 C 1.53658 * 109.59292 * 145.74819 * 5 3 2 8 8 S 1.81665 * 108.90483 * 178.34984 * 7 5 3 9 9 O 1.42097 * 108.65273 * 189.98002 * 8 7 5 10 10 O 1.42103 * 108.65170 * 58.68540 * 8 7 5 11 11 C 1.81657 * 101.39145 * 304.33421 * 8 7 5 12 12 C 1.53185 * 108.94988 * 55.55904 * 11 8 7 13 13 N 1.46379 * 109.51080 * 301.74534 * 12 11 8 14 14 C 1.34778 * 119.69990 * 244.26893 * 13 12 11 15 15 O 1.21283 * 119.99903 * 174.27400 * 14 13 12 16 16 C 1.50701 * 119.99965 * 354.28309 * 14 13 12 17 17 S 1.80994 * 109.47159 * 179.97438 * 16 14 13 18 18 C 1.76195 * 100.00196 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00041 * 359.97438 * 18 17 16 20 20 C 1.38797 * 120.00096 * 179.97438 * 18 17 16 21 21 N 1.31629 * 120.00203 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00007 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47049 * 180.02562 * 22 20 18 24 24 H 1.48497 * 109.47053 * 59.99957 * 22 20 18 25 25 H 1.48498 * 109.47095 * 300.00185 * 22 20 18 26 26 H 1.09001 * 109.47477 * 299.99685 * 1 2 3 27 27 H 1.08998 * 109.47421 * 59.99876 * 1 2 3 28 28 H 1.09001 * 109.47212 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.66655 * 58.47840 * 7 5 3 30 30 H 1.09000 * 109.58110 * 298.18274 * 7 5 3 31 31 H 1.09003 * 109.55884 * 295.71814 * 11 8 7 32 32 H 1.09001 * 109.56219 * 175.40147 * 11 8 7 33 33 H 1.09001 * 109.46158 * 181.73230 * 12 11 8 34 34 H 1.09003 * 109.46286 * 61.76137 * 12 11 8 35 35 H 1.08999 * 109.46865 * 59.99462 * 16 14 13 36 36 H 1.08994 * 109.46700 * 299.99509 * 16 14 13 37 37 H 0.97000 * 120.00059 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9772 0.3678 -0.4438 7 6 4.0179 2.4969 -0.8153 8 16 5.8307 2.6020 -0.7629 9 8 6.2298 3.8492 -1.3145 10 8 6.3711 1.4002 -1.2950 11 6 6.1367 2.6338 1.0274 12 6 5.4831 1.4042 1.6657 13 7 4.0484 1.4071 1.3753 14 6 3.1630 1.5270 2.3845 15 8 1.9793 1.6345 2.1431 16 6 3.6439 1.5276 3.8127 17 16 2.2278 1.7034 4.9260 18 6 3.0556 1.6735 6.4811 19 1 4.1299 1.5688 6.5191 20 6 2.3272 1.7844 7.6574 21 7 1.0178 1.9114 7.6112 22 14 3.2047 1.7519 9.3061 23 1 2.2090 1.8860 10.3996 24 1 4.1707 2.8777 9.3748 25 1 3.9321 0.4658 9.4544 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 3.5875 3.4025 -0.3875 30 1 3.6882 2.3892 -1.8486 31 1 5.7063 3.5393 1.4551 32 1 7.2104 2.6148 1.2146 33 1 5.6353 1.4310 2.7447 34 1 5.9345 0.4999 1.2577 35 1 4.3307 2.3603 3.9644 36 1 4.1579 0.5898 4.0233 37 1 0.5620 1.9272 6.7551 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337496801.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:41 Heat of formation + Delta-G solvation = -166.108550 kcal Electronic energy + Delta-G solvation = -25889.127161 eV Core-core repulsion = 21886.563729 eV Total energy + Delta-G solvation = -4002.563432 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 337.058 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -41.31425 -39.37628 -37.58595 -36.84055 -36.48097 -36.25841 -33.12412 -32.65275 -31.17156 -29.27200 -28.01095 -25.33280 -24.92562 -24.10270 -21.77454 -20.03919 -19.12703 -18.53815 -17.99387 -17.35807 -17.16391 -16.67374 -16.46056 -16.32669 -16.08020 -15.66684 -15.50027 -14.79383 -14.38578 -13.97867 -13.85665 -13.65466 -13.63773 -13.13962 -12.97074 -12.84976 -12.61363 -12.52258 -12.45495 -12.41785 -12.33743 -12.03344 -11.92897 -11.44083 -11.00517 -10.93453 -10.64969 -10.31460 -10.25344 -9.78115 -9.71522 -9.43485 -9.12579 -8.38250 -6.83461 -6.73519 -4.14163 -0.50904 1.82326 2.07189 2.34033 2.59434 2.74529 3.08498 3.16033 3.29110 3.30295 3.50137 3.51775 3.68322 4.06189 4.12319 4.25337 4.41297 4.47564 4.60513 4.67427 4.78680 5.06818 5.11083 5.19397 5.19670 5.24594 5.27485 5.34596 5.46051 5.65742 5.71713 5.80504 6.49426 6.72775 7.78361 7.78825 7.95578 8.37799 9.14337 10.70004 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.014128 B = 0.003837 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.384395 B = 7296.463734 C = 8816.810123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.359 6.359 3 C 0.485 3.515 4 O -0.487 6.487 5 C 0.169 3.831 6 H 0.128 0.872 7 C -0.618 4.618 8 S 2.429 3.571 9 O -0.931 6.931 10 O -0.928 6.928 11 C -0.626 4.626 12 C 0.119 3.881 13 N -0.626 5.626 14 C 0.532 3.468 15 O -0.472 6.472 16 C -0.130 4.130 17 S -0.110 6.110 18 C -0.610 4.610 19 H 0.067 0.933 20 C 0.038 3.962 21 N -0.881 5.881 22 Si 1.084 2.916 23 H -0.277 1.277 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.097 0.903 29 H 0.153 0.847 30 H 0.151 0.849 31 H 0.144 0.856 32 H 0.154 0.846 33 H 0.122 0.878 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.766 -2.842 -16.651 19.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.276 6.276 3 C 0.326 3.674 4 O -0.373 6.373 5 C 0.063 3.937 6 H 0.146 0.854 7 C -0.747 4.747 8 S 2.610 3.390 9 O -0.928 6.928 10 O -0.926 6.926 11 C -0.756 4.756 12 C -0.004 4.004 13 N -0.366 5.366 14 C 0.321 3.679 15 O -0.345 6.345 16 C -0.281 4.281 17 S 0.116 5.884 18 C -0.758 4.758 19 H 0.086 0.914 20 C -0.173 4.173 21 N -0.515 5.515 22 Si 0.910 3.090 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.210 1.210 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.116 0.884 29 H 0.171 0.829 30 H 0.169 0.831 31 H 0.162 0.838 32 H 0.172 0.828 33 H 0.140 0.860 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.074 -2.265 -16.083 18.138 hybrid contribution 1.099 0.003 -0.662 1.282 sum 9.172 -2.262 -16.745 19.226 Atomic orbital electron populations 1.23208 0.75644 1.03283 1.02790 1.86368 1.23942 1.32679 1.84596 1.22022 0.89784 0.82443 0.73136 1.90661 1.65824 1.36109 1.44751 1.20281 0.91839 0.98113 0.83484 0.85440 1.30799 1.27068 1.07155 1.09646 1.07810 0.77492 0.75455 0.78290 1.93630 1.79711 1.43721 1.75720 1.93613 1.75534 1.47206 1.76203 1.30651 1.11584 1.08200 1.25194 1.21456 0.78208 0.95851 1.04929 1.48281 1.07379 1.76479 1.04477 1.20765 0.85984 0.74141 0.87020 1.90738 1.16217 1.46105 1.81393 1.23377 1.06042 1.05773 0.92864 1.84947 1.07544 1.96213 0.99670 1.23668 0.96896 1.63474 0.91764 0.91449 1.26066 0.95742 0.92805 1.02723 1.70817 1.08151 1.42713 1.29773 0.83329 0.74956 0.76757 0.74008 1.20217 1.21075 1.21049 0.91054 0.92393 0.88411 0.82887 0.83138 0.83820 0.82808 0.85953 0.87842 0.88309 0.88009 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 53. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.56 101.05 1.07 1.63 16 2 O -0.36 -5.24 10.49 -44.69 -0.47 -5.71 16 3 C 0.48 7.33 4.28 36.00 0.15 7.49 16 4 O -0.49 -8.83 14.48 -26.74 -0.39 -9.22 16 5 C 0.17 1.87 3.20 -68.80 -0.22 1.65 16 6 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16 7 C -0.62 -5.38 5.53 37.50 0.21 -5.18 16 8 S 2.43 19.15 5.29 -107.50 -0.57 18.59 16 9 O -0.93 -10.53 18.10 -57.81 -1.05 -11.58 16 10 O -0.93 -9.24 18.02 -57.81 -1.04 -10.28 16 11 C -0.63 -3.74 6.55 37.25 0.24 -3.49 16 12 C 0.12 0.90 6.11 -4.01 -0.02 0.87 16 13 N -0.63 -7.29 2.79 -167.10 -0.47 -7.75 16 14 C 0.53 8.83 7.56 -10.98 -0.08 8.75 16 15 O -0.47 -9.68 11.56 -24.28 -0.28 -9.96 16 16 C -0.13 -2.31 4.48 36.01 0.16 -2.15 16 17 S -0.11 -2.77 19.60 -107.50 -2.11 -4.88 16 18 C -0.61 -16.60 9.50 30.94 0.29 -16.31 16 19 H 0.07 1.73 7.80 -52.49 -0.41 1.32 16 20 C 0.04 1.05 5.49 -17.43 -0.10 0.95 16 21 N -0.88 -26.52 13.67 55.49 0.76 -25.76 16 22 Si 1.08 23.87 29.92 -169.99 -5.09 18.79 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 24 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 25 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 26 H 0.07 1.07 8.13 -51.93 -0.42 0.65 16 27 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 28 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.15 1.44 7.83 -51.92 -0.41 1.04 16 30 H 0.15 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.14 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.15 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.12 0.87 5.73 -51.93 -0.30 0.57 16 34 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 1.56 7.61 -51.92 -0.40 1.17 16 36 H 0.10 1.62 7.93 -51.92 -0.41 1.21 16 37 H 0.28 8.53 7.13 -40.82 -0.29 8.24 16 LS Contribution 337.64 15.07 5.09 5.09 Total: -1.00 -40.23 337.64 -8.29 -48.52 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -4.39 Total: -0.04 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: 1.70 Total: -5.79 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 0.29 Total: -33.52 kcal Atomic # 8 Polarization: -43.53 SS G_CDS: -3.22 Total: -46.75 kcal Atomic # 14 Polarization: 23.87 SS G_CDS: -5.09 Total: 18.79 kcal Atomic # 16 Polarization: 16.38 SS G_CDS: -2.68 Total: 13.71 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -40.23 -8.29 -48.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337496801.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.585 kcal (2) G-P(sol) polarization free energy of solvation -40.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds