Wall clock time and date at job start Tue Mar 31 2020 19:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34224 * 117.00013 * 2 1 4 4 O 1.20827 * 120.00220 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99940 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.46805 * 335.13737 * 5 3 2 7 7 C 1.53185 * 109.46120 * 215.15534 * 5 3 2 8 8 S 1.81662 * 108.95097 * 181.73624 * 7 5 3 9 9 O 1.42101 * 108.64927 * 301.21259 * 8 7 5 10 10 O 1.42101 * 108.65086 * 169.91793 * 8 7 5 11 11 C 1.81658 * 101.38817 * 55.56500 * 8 7 5 12 12 C 1.53185 * 108.95022 * 304.43597 * 11 8 7 13 13 N 1.46385 * 109.46474 * 95.12408 * 5 3 2 14 14 C 1.34780 * 119.70013 * 4.27488 * 13 5 3 15 15 O 1.21281 * 120.00136 * 5.38077 * 14 13 5 16 16 C 1.50700 * 119.99898 * 185.37760 * 14 13 5 17 17 S 1.81008 * 109.46830 * 180.02562 * 16 14 13 18 18 C 1.76199 * 99.99650 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00684 * 359.97438 * 18 17 16 20 20 C 1.38803 * 119.99809 * 180.02562 * 18 17 16 21 21 N 1.31629 * 119.99845 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00136 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47040 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47174 * 119.99561 * 22 20 18 25 25 H 1.48492 * 109.47221 * 240.00112 * 22 20 18 26 26 H 1.08994 * 109.47025 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46524 * 300.00156 * 1 2 3 28 28 H 1.09003 * 109.47017 * 59.99477 * 1 2 3 29 29 H 1.09007 * 109.55987 * 301.58084 * 7 5 3 30 30 H 1.09005 * 109.55479 * 61.89436 * 7 5 3 31 31 H 1.09000 * 109.56176 * 184.59908 * 11 8 7 32 32 H 1.09001 * 109.56322 * 64.27839 * 11 8 7 33 33 H 1.09000 * 109.46160 * 298.24960 * 12 11 8 34 34 H 1.08999 * 109.46901 * 178.26793 * 12 11 8 35 35 H 1.08996 * 109.47460 * 299.99778 * 16 14 13 36 36 H 1.08999 * 109.47112 * 60.00311 * 16 14 13 37 37 H 0.97002 * 120.00026 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9781 0.3626 0.4311 7 6 4.0146 2.4806 0.8311 8 16 5.8270 2.5925 0.7787 9 8 6.3719 1.3848 1.2923 10 8 6.2223 3.8328 1.3485 11 6 6.1311 2.6522 -1.0113 12 6 5.4810 1.4300 -1.6673 13 7 4.0465 1.4237 -1.3754 14 6 3.1598 1.5556 -2.3818 15 8 1.9753 1.6487 -2.1382 16 6 3.6400 1.5875 -3.8099 17 16 2.2219 1.7730 -4.9193 18 6 3.0493 1.7796 -6.4749 19 1 4.1244 1.6854 -6.5152 20 6 2.3194 1.9071 -7.6486 21 7 1.0091 2.0225 -7.5996 22 14 3.1966 1.9149 -9.2979 23 1 4.6589 1.7724 -9.0814 24 1 2.7057 0.7834 -10.1250 25 1 2.9228 3.1954 -9.9981 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 3.5806 3.3909 0.4174 30 1 3.6864 2.3544 1.8629 31 1 7.2046 2.6396 -1.1997 32 1 5.6971 3.5624 -1.4251 33 1 5.9359 0.5213 -1.2731 34 1 5.6320 1.4733 -2.7459 35 1 4.3198 2.4286 -3.9460 36 1 4.1616 0.6581 -4.0386 37 1 0.4990 2.1112 -8.4198 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337496802.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:47 Heat of formation + Delta-G solvation = -161.054893 kcal Electronic energy + Delta-G solvation = -25851.259522 eV Core-core repulsion = 21848.915232 eV Total energy + Delta-G solvation = -4002.344289 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 337.058 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -41.23937 -39.29168 -37.53428 -36.76462 -36.43791 -36.18843 -33.08119 -32.54406 -31.08644 -29.15425 -27.94521 -25.65751 -25.14410 -24.04311 -21.71080 -19.97900 -19.05305 -18.31545 -17.66367 -17.19128 -17.06730 -16.60496 -16.40319 -16.25341 -16.00067 -15.53877 -15.41751 -14.90709 -14.42430 -14.24075 -13.77176 -13.57849 -13.57454 -13.04739 -12.90382 -12.82618 -12.64421 -12.55819 -12.40835 -12.34475 -12.21703 -11.88247 -11.39255 -11.15463 -11.14375 -10.90643 -10.84037 -10.58290 -10.24515 -9.92883 -9.65718 -9.35030 -9.17889 -8.39441 -6.65417 -6.33162 -4.05759 -0.46286 1.90945 2.12201 2.44369 2.68247 2.83463 3.13732 3.14438 3.20094 3.23292 3.35212 3.57472 3.74953 4.07291 4.14215 4.30282 4.47620 4.53694 4.68054 4.74482 4.85682 5.02763 5.14048 5.24774 5.25502 5.33022 5.40253 5.41775 5.59181 5.72858 5.84122 5.89903 6.56308 6.82733 7.48477 7.87471 8.05346 8.23400 9.12502 10.74236 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.014134 B = 0.003821 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.509367 B = 7325.257605 C = 8846.626691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.359 6.359 3 C 0.485 3.515 4 O -0.488 6.488 5 C 0.169 3.831 6 H 0.127 0.873 7 C -0.619 4.619 8 S 2.429 3.571 9 O -0.929 6.929 10 O -0.932 6.932 11 C -0.626 4.626 12 C 0.120 3.880 13 N -0.627 5.627 14 C 0.533 3.467 15 O -0.472 6.472 16 C -0.153 4.153 17 S -0.055 6.055 18 C -0.538 4.538 19 H 0.075 0.925 20 C 0.075 3.925 21 N -0.866 5.866 22 Si 0.920 3.080 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.279 1.279 26 H 0.097 0.903 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.153 0.847 30 H 0.150 0.850 31 H 0.153 0.847 32 H 0.144 0.856 33 H 0.102 0.898 34 H 0.123 0.877 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.215 -2.978 16.075 18.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.276 6.276 3 C 0.326 3.674 4 O -0.374 6.374 5 C 0.063 3.937 6 H 0.144 0.856 7 C -0.747 4.747 8 S 2.609 3.391 9 O -0.926 6.926 10 O -0.929 6.929 11 C -0.756 4.756 12 C -0.004 4.004 13 N -0.367 5.367 14 C 0.322 3.678 15 O -0.344 6.344 16 C -0.303 4.303 17 S 0.172 5.828 18 C -0.686 4.686 19 H 0.093 0.907 20 C -0.135 4.135 21 N -0.501 5.501 22 Si 0.746 3.254 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.205 1.205 26 H 0.115 0.885 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.171 0.829 30 H 0.168 0.832 31 H 0.171 0.829 32 H 0.162 0.838 33 H 0.120 0.880 34 H 0.141 0.859 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.624 -2.492 17.036 18.830 hybrid contribution 1.174 0.135 -2.006 2.328 sum 8.799 -2.357 15.030 17.575 Atomic orbital electron populations 1.23207 0.75677 1.03235 1.02813 1.86365 1.23918 1.32709 1.84615 1.22020 0.89777 0.82436 0.73125 1.90663 1.65812 1.36099 1.44785 1.20163 0.91891 0.98145 0.83545 0.85574 1.30719 1.27077 1.07464 1.09455 1.07812 0.77507 0.75437 0.78320 1.93611 1.75401 1.46750 1.76862 1.93627 1.79843 1.44278 1.75125 1.30646 1.11557 1.08365 1.25040 1.21446 0.78318 0.95824 1.04809 1.48317 1.07365 1.76416 1.04618 1.20795 0.85945 0.74025 0.87017 1.90737 1.16175 1.46214 1.81244 1.23597 1.07593 1.05477 0.93584 1.85528 1.04169 1.95622 0.97509 1.22873 0.95545 1.58742 0.91446 0.90717 1.24997 0.94917 0.94323 0.99225 1.70016 1.05314 1.46003 1.28768 0.86096 0.79409 0.78000 0.81870 1.19563 1.20488 1.20513 0.88466 0.92460 0.90960 0.82851 0.83171 0.82883 0.83797 0.87955 0.85882 0.88564 0.88275 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 53. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 10.56 101.05 1.07 1.63 16 2 O -0.36 -5.30 10.50 -44.61 -0.47 -5.77 16 3 C 0.49 7.41 4.27 36.01 0.15 7.57 16 4 O -0.49 -8.92 14.45 -26.76 -0.39 -9.31 16 5 C 0.17 1.89 3.19 -69.05 -0.22 1.67 16 6 H 0.13 1.05 8.14 -51.93 -0.42 0.62 16 7 C -0.62 -5.47 5.52 37.25 0.21 -5.27 16 8 S 2.43 19.47 5.29 -107.50 -0.57 18.91 16 9 O -0.93 -9.38 18.02 -57.81 -1.04 -10.42 16 10 O -0.93 -10.65 18.10 -57.81 -1.05 -11.70 16 11 C -0.63 -3.81 6.55 37.25 0.24 -3.57 16 12 C 0.12 0.92 6.11 -4.01 -0.02 0.89 16 13 N -0.63 -7.39 2.80 -167.38 -0.47 -7.86 16 14 C 0.53 8.92 7.57 -10.98 -0.08 8.84 16 15 O -0.47 -9.76 11.53 -24.26 -0.28 -10.04 16 16 C -0.15 -2.71 4.47 36.01 0.16 -2.55 16 17 S -0.05 -1.39 20.57 -107.50 -2.21 -3.60 16 18 C -0.54 -14.45 9.50 30.94 0.29 -14.15 16 19 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 20 C 0.08 2.05 5.49 -17.43 -0.10 1.95 16 21 N -0.87 -25.21 13.22 55.49 0.73 -24.47 16 22 Si 0.92 20.53 29.55 -169.99 -5.02 15.51 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 26 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 28 H 0.07 1.10 8.13 -51.93 -0.42 0.68 16 29 H 0.15 1.47 7.81 -51.92 -0.41 1.06 16 30 H 0.15 1.01 8.14 -51.92 -0.42 0.59 16 31 H 0.15 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.14 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.12 0.89 5.73 -51.93 -0.30 0.59 16 35 H 0.10 1.51 7.63 -51.92 -0.40 1.12 16 36 H 0.10 1.57 7.91 -51.92 -0.41 1.16 16 37 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 338.90 15.07 5.11 5.11 Total: -1.00 -39.61 338.90 -8.39 -48.00 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -4.44 Total: -1.36 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: 1.70 Total: -2.98 kcal Atomic # 7 Polarization: -32.60 SS G_CDS: 0.26 Total: -32.33 kcal Atomic # 8 Polarization: -44.02 SS G_CDS: -3.22 Total: -47.24 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 18.08 SS G_CDS: -2.78 Total: 15.30 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -39.61 -8.39 -48.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337496802.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.059 kcal (2) G-P(sol) polarization free energy of solvation -39.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds