Wall clock time and date at job start Tue Mar 31 2020 19:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34224 * 117.00013 * 2 1 4 4 O 1.20827 * 120.00220 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99940 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.46805 * 335.13737 * 5 3 2 7 7 C 1.53185 * 109.46120 * 215.15534 * 5 3 2 8 8 S 1.81662 * 108.95097 * 181.73624 * 7 5 3 9 9 O 1.42101 * 108.64927 * 301.21259 * 8 7 5 10 10 O 1.42101 * 108.65086 * 169.91793 * 8 7 5 11 11 C 1.81658 * 101.38817 * 55.56500 * 8 7 5 12 12 C 1.53185 * 108.95022 * 304.43597 * 11 8 7 13 13 N 1.46385 * 109.46474 * 95.12408 * 5 3 2 14 14 C 1.34780 * 119.70013 * 4.27488 * 13 5 3 15 15 O 1.21281 * 120.00136 * 5.38077 * 14 13 5 16 16 C 1.50700 * 119.99898 * 185.37760 * 14 13 5 17 17 S 1.81008 * 109.46830 * 180.02562 * 16 14 13 18 18 C 1.76199 * 99.99650 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00684 * 359.97438 * 18 17 16 20 20 C 1.38803 * 119.99809 * 180.02562 * 18 17 16 21 21 N 1.31629 * 119.99845 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00136 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47040 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47174 * 119.99561 * 22 20 18 25 25 H 1.48492 * 109.47221 * 240.00112 * 22 20 18 26 26 H 1.08994 * 109.47025 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46524 * 300.00156 * 1 2 3 28 28 H 1.09003 * 109.47017 * 59.99477 * 1 2 3 29 29 H 1.09007 * 109.55987 * 301.58084 * 7 5 3 30 30 H 1.09005 * 109.55479 * 61.89436 * 7 5 3 31 31 H 1.09000 * 109.56176 * 184.59908 * 11 8 7 32 32 H 1.09001 * 109.56322 * 64.27839 * 11 8 7 33 33 H 1.09000 * 109.46160 * 298.24960 * 12 11 8 34 34 H 1.08999 * 109.46901 * 178.26793 * 12 11 8 35 35 H 1.08996 * 109.47460 * 299.99778 * 16 14 13 36 36 H 1.08999 * 109.47112 * 60.00311 * 16 14 13 37 37 H 0.97002 * 120.00026 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9781 0.3626 0.4311 7 6 4.0146 2.4806 0.8311 8 16 5.8270 2.5925 0.7787 9 8 6.3719 1.3848 1.2923 10 8 6.2223 3.8328 1.3485 11 6 6.1311 2.6522 -1.0113 12 6 5.4810 1.4300 -1.6673 13 7 4.0465 1.4237 -1.3754 14 6 3.1598 1.5556 -2.3818 15 8 1.9753 1.6487 -2.1382 16 6 3.6400 1.5875 -3.8099 17 16 2.2219 1.7730 -4.9193 18 6 3.0493 1.7796 -6.4749 19 1 4.1244 1.6854 -6.5152 20 6 2.3194 1.9071 -7.6486 21 7 1.0091 2.0225 -7.5996 22 14 3.1966 1.9149 -9.2979 23 1 4.6589 1.7724 -9.0814 24 1 2.7057 0.7834 -10.1250 25 1 2.9228 3.1954 -9.9981 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 3.5806 3.3909 0.4174 30 1 3.6864 2.3544 1.8629 31 1 7.2046 2.6396 -1.1997 32 1 5.6971 3.5624 -1.4251 33 1 5.9359 0.5213 -1.2731 34 1 5.6320 1.4733 -2.7459 35 1 4.3198 2.4286 -3.9460 36 1 4.1616 0.6581 -4.0386 37 1 0.4990 2.1112 -8.4198 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337496802.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:46 Heat of formation + Delta-G solvation = -191.716111 kcal Electronic energy + Delta-G solvation = -25852.589092 eV Core-core repulsion = 21848.915232 eV Total energy + Delta-G solvation = -4003.673859 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 337.058 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.35753 -40.46236 -38.37805 -37.77845 -37.34736 -37.18241 -34.58189 -33.93963 -32.00775 -30.33608 -28.98962 -27.67995 -26.04536 -24.84055 -22.80479 -21.03761 -20.09415 -19.54154 -19.06308 -18.29556 -18.09624 -17.39714 -17.33612 -17.04778 -16.98293 -16.87743 -16.64445 -16.42374 -15.92866 -15.27119 -15.01610 -14.58929 -14.49950 -14.24334 -14.16674 -13.79815 -13.63606 -13.48760 -13.29772 -13.17217 -13.14755 -13.01867 -12.92391 -12.86432 -12.59080 -12.17758 -11.78368 -11.71000 -11.63143 -11.29477 -11.16026 -10.96721 -10.31567 -10.25063 -8.67676 -8.34939 -6.12856 -1.10933 0.83855 1.20987 1.30297 1.42293 1.43607 1.48752 1.57340 1.80446 1.93187 2.26115 2.56579 2.82413 3.00675 3.04341 3.18405 3.44375 3.63895 3.71903 3.78061 3.93987 4.02416 4.14440 4.24539 4.27660 4.36044 4.43754 4.58874 4.66360 4.68101 4.82632 5.00217 5.43356 5.45170 5.75867 6.20373 6.69923 6.87211 7.07572 8.74295 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.014134 B = 0.003821 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.509367 B = 7325.257605 C = 8846.626691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.365 6.365 3 C 0.477 3.523 4 O -0.527 6.527 5 C 0.166 3.834 6 H 0.163 0.837 7 C -0.623 4.623 8 S 2.455 3.545 9 O -0.946 6.946 10 O -0.967 6.967 11 C -0.611 4.611 12 C 0.104 3.896 13 N -0.613 5.613 14 C 0.531 3.469 15 O -0.522 6.522 16 C -0.126 4.126 17 S -0.154 6.154 18 C -0.541 4.541 19 H 0.089 0.911 20 C 0.014 3.986 21 N -0.913 5.913 22 Si 0.997 3.003 23 H -0.252 1.252 24 H -0.277 1.277 25 H -0.278 1.278 26 H 0.130 0.870 27 H 0.068 0.932 28 H 0.038 0.962 29 H 0.142 0.858 30 H 0.167 0.833 31 H 0.192 0.808 32 H 0.151 0.849 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.769 -3.806 16.094 20.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.281 6.281 3 C 0.320 3.680 4 O -0.415 6.415 5 C 0.060 3.940 6 H 0.180 0.820 7 C -0.750 4.750 8 S 2.638 3.362 9 O -0.943 6.943 10 O -0.964 6.964 11 C -0.743 4.743 12 C -0.017 4.017 13 N -0.352 5.352 14 C 0.320 3.680 15 O -0.398 6.398 16 C -0.277 4.277 17 S 0.073 5.927 18 C -0.689 4.689 19 H 0.107 0.893 20 C -0.191 4.191 21 N -0.550 5.550 22 Si 0.819 3.181 23 H -0.175 1.175 24 H -0.202 1.202 25 H -0.204 1.204 26 H 0.148 0.852 27 H 0.086 0.914 28 H 0.057 0.943 29 H 0.161 0.839 30 H 0.185 0.815 31 H 0.209 0.791 32 H 0.169 0.831 33 H 0.154 0.846 34 H 0.153 0.847 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.229 -3.337 17.116 20.741 hybrid contribution 0.106 0.361 -1.894 1.931 sum 11.336 -2.976 15.223 19.212 Atomic orbital electron populations 1.23342 0.75130 1.05064 1.01668 1.86363 1.24685 1.32780 1.84311 1.22880 0.91518 0.81878 0.71709 1.90634 1.67166 1.37283 1.46449 1.20486 0.89174 1.00788 0.83513 0.82013 1.30810 1.28204 1.05939 1.10060 1.07016 0.76092 0.74021 0.79076 1.93585 1.75328 1.47180 1.78184 1.93587 1.80097 1.45785 1.76914 1.30580 1.13960 1.08065 1.21702 1.21966 0.75610 0.98055 1.06076 1.48234 1.08528 1.74628 1.03785 1.20624 0.85810 0.74062 0.87537 1.90744 1.18391 1.48663 1.81981 1.23435 1.04036 1.07831 0.92383 1.85776 1.10542 1.96046 1.00301 1.23236 0.96129 1.57830 0.91661 0.89280 1.26098 0.95574 0.93814 1.03596 1.70191 1.07315 1.47717 1.29779 0.84930 0.78954 0.77826 0.76406 1.17539 1.20242 1.20377 0.85172 0.91377 0.94327 0.83934 0.81508 0.79078 0.83099 0.84561 0.84689 0.85901 0.85664 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.09 10.56 113.37 1.20 2.28 16 2 O -0.36 -10.78 10.50 -46.22 -0.49 -11.26 16 3 C 0.48 14.61 4.27 71.24 0.30 14.92 16 4 O -0.53 -20.04 14.45 29.62 0.43 -19.62 16 5 C 0.17 3.40 3.19 44.33 0.14 3.54 16 6 H 0.16 2.15 8.14 -2.39 -0.02 2.13 16 7 C -0.62 -10.03 5.52 72.04 0.40 -9.63 16 8 S 2.46 32.31 5.29 -56.49 -0.30 32.01 16 9 O -0.95 -15.88 18.02 -127.39 -2.30 -18.18 16 10 O -0.97 -20.27 18.10 -127.39 -2.31 -22.58 16 11 C -0.61 -4.67 6.55 72.04 0.47 -4.20 16 12 C 0.10 1.11 6.11 86.46 0.53 1.64 16 13 N -0.61 -12.85 2.80 -801.85 -2.25 -15.10 16 14 C 0.53 17.24 7.57 87.66 0.66 17.90 16 15 O -0.52 -22.21 11.53 25.47 0.29 -21.92 16 16 C -0.13 -4.27 4.47 71.24 0.32 -3.95 16 17 S -0.15 -7.98 20.57 -56.49 -1.16 -9.14 16 18 C -0.54 -28.86 9.50 67.96 0.65 -28.21 16 19 H 0.09 4.31 7.80 -2.91 -0.02 4.28 16 20 C 0.01 0.75 5.49 84.86 0.47 1.22 16 21 N -0.91 -54.54 13.22 21.65 0.29 -54.26 16 22 Si 1.00 41.65 29.55 68.60 2.03 43.68 16 23 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 24 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 25 H -0.28 -11.45 7.11 99.48 0.71 -10.75 16 26 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.07 1.60 8.13 -2.39 -0.02 1.58 16 28 H 0.04 1.27 8.13 -2.39 -0.02 1.25 16 29 H 0.14 2.67 7.81 -2.38 -0.02 2.65 16 30 H 0.17 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.19 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.15 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.14 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.14 1.22 5.73 -2.39 -0.01 1.21 16 35 H 0.12 3.49 7.63 -2.40 -0.02 3.47 16 36 H 0.13 3.58 7.91 -2.39 -0.02 3.56 16 37 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -90.96 338.90 0.48 -90.49 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 1.10 Total: 10.37 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: 5.13 Total: -4.50 kcal Atomic # 7 Polarization: -67.40 SS G_CDS: -1.96 Total: -69.36 kcal Atomic # 8 Polarization: -89.19 SS G_CDS: -4.37 Total: -93.55 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Atomic # 16 Polarization: 24.34 SS G_CDS: -1.46 Total: 22.87 kcal Total: -90.96 0.48 -90.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337496802.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.230 kcal (2) G-P(sol) polarization free energy of solvation -90.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds