Wall clock time and date at job start Tue Mar 31 2020 19:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32098 * 120.46135 * 2 1 4 4 C 1.32567 * 121.15746 * 179.97438 * 3 2 1 5 5 O 1.35299 * 118.94880 * 180.02562 * 4 3 2 6 6 N 1.32258 * 122.09778 * 359.72585 * 4 3 2 7 7 C 1.32910 * 120.78502 * 0.53906 * 6 4 3 8 8 S 1.76195 * 120.61544 * 179.76235 * 7 6 4 9 9 C 1.39824 * 120.46316 * 179.97438 * 2 1 3 10 10 C 1.47214 * 120.94266 * 0.02562 * 9 2 1 11 11 O 1.21625 * 119.99905 * 270.01947 * 10 9 2 12 12 N 1.34771 * 119.99928 * 90.02341 * 10 9 2 13 13 C 1.46497 * 120.00320 * 179.97438 * 12 10 9 14 14 H 1.09004 * 109.46750 * 325.00237 * 13 12 10 15 15 C 1.50696 * 109.47578 * 204.99649 * 13 12 10 16 16 H 1.07996 * 119.99640 * 0.02562 * 15 13 12 17 17 C 1.37879 * 119.99814 * 179.97438 * 15 13 12 18 18 N 1.31513 * 120.00339 * 0.02562 * 17 15 13 19 19 Si 1.86807 * 119.99455 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47063 * 90.00234 * 19 17 15 21 21 H 1.48500 * 109.46825 * 209.99966 * 19 17 15 22 22 H 1.48500 * 109.47190 * 329.99745 * 19 17 15 23 23 C 1.53005 * 109.47018 * 84.99758 * 13 12 10 24 24 F 1.39893 * 109.47004 * 60.00209 * 23 13 12 25 25 F 1.39903 * 109.47166 * 180.02562 * 23 13 12 26 26 F 1.39905 * 109.47117 * 300.00295 * 23 13 12 27 27 H 1.09004 * 109.47349 * 270.02297 * 1 2 3 28 28 H 1.08996 * 109.47398 * 30.02612 * 1 2 3 29 29 H 1.09002 * 109.47136 * 150.02889 * 1 2 3 30 30 H 0.96698 * 114.00088 * 89.99614 * 5 4 3 31 31 H 1.41005 * 99.99931 * 269.71457 * 8 7 6 32 32 H 0.97004 * 119.99903 * 359.97438 * 12 10 9 33 33 H 0.97000 * 119.99951 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1767 1.1386 0.0000 4 6 3.5023 1.1548 0.0005 5 8 4.1427 2.3466 0.0010 6 7 4.2186 0.0430 0.0064 7 6 3.6272 -1.1473 0.0014 8 16 4.5860 -2.6256 0.0029 9 6 2.2159 -1.2052 0.0005 10 6 1.5113 -2.4978 0.0006 11 8 1.2196 -3.0313 1.0539 12 7 1.1897 -3.0899 -1.1666 13 6 0.4891 -4.3765 -1.1667 14 1 0.8325 -4.9772 -0.3244 15 6 0.7767 -5.1052 -2.4540 16 1 1.4178 -4.6551 -3.1975 17 6 0.2224 -6.3469 -2.6820 18 7 -0.5578 -6.8951 -1.7763 19 14 0.5797 -7.2504 -4.2775 20 1 1.7884 -8.0961 -4.1075 21 1 -0.5795 -8.1090 -4.6304 22 1 0.8139 -6.2645 -5.3630 23 6 -1.0170 -4.1371 -1.0418 24 9 -1.4577 -3.3660 -2.1227 25 9 -1.6861 -5.3657 -1.0413 26 9 -1.2841 -3.4606 0.1533 27 1 -0.3634 0.0004 1.0277 28 1 -0.3634 0.8897 -0.5142 29 1 -0.3633 -0.8903 -0.5134 30 1 4.3285 2.6929 0.8845 31 1 4.7198 -2.8321 -1.3855 32 1 1.4221 -2.6642 -2.0067 33 1 -0.9480 -7.7685 -1.9369 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348359592.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:33 Heat of formation + Delta-G solvation = -172.611887 kcal Electronic energy + Delta-G solvation = -27969.054493 eV Core-core repulsion = 23321.201114 eV Total energy + Delta-G solvation = -4647.853379 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.049 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.37656 -48.00319 -47.68662 -42.64496 -40.60731 -38.55205 -36.55979 -35.87979 -34.55474 -33.36463 -30.56982 -29.76754 -26.65378 -26.30110 -24.63688 -23.58914 -21.95569 -20.53099 -19.92330 -19.60936 -18.86873 -18.73922 -18.66311 -18.43055 -17.80836 -17.39123 -16.89509 -16.38858 -15.76566 -15.42810 -15.35266 -15.08507 -14.91795 -14.61634 -14.50525 -14.40611 -14.26240 -14.10468 -14.00576 -13.86489 -13.63630 -13.33718 -13.12565 -13.03963 -12.76375 -12.68245 -12.62558 -12.24192 -11.69770 -11.60896 -11.22805 -10.70253 -10.66571 -10.60506 -10.18320 -9.47791 -8.20509 -6.50600 -1.03737 -0.63384 -0.04722 1.24211 1.29975 1.47203 1.49039 1.58567 1.74454 1.91646 2.15592 2.37573 2.54305 2.68308 2.95849 3.08347 3.41347 3.65501 3.82387 3.86338 3.91875 4.20729 4.44050 4.49908 4.54255 4.90385 5.00797 5.24153 5.25796 5.50816 5.65152 6.35503 6.44278 6.46163 6.53677 7.03516 7.22397 8.71781 Molecular weight = 337.05amu Principal moments of inertia in cm(-1) A = 0.016085 B = 0.004393 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.342423 B = 6372.534661 C = 7252.977146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.244 3.756 3 N -0.512 5.512 4 C 0.512 3.488 5 O -0.453 6.453 6 N -0.503 5.503 7 C 0.215 3.785 8 S -0.095 6.095 9 C -0.207 4.207 10 C 0.580 3.420 11 O -0.540 6.540 12 N -0.692 5.692 13 C 0.255 3.745 14 H 0.059 0.941 15 C -0.560 4.560 16 H 0.090 0.910 17 C 0.021 3.979 18 N -0.869 5.869 19 Si 0.976 3.024 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.262 1.262 23 C 0.415 3.585 24 F -0.202 7.202 25 F -0.150 7.150 26 F -0.214 7.214 27 H 0.109 0.891 28 H 0.117 0.883 29 H 0.074 0.926 30 H 0.439 0.561 31 H 0.147 0.853 32 H 0.410 0.590 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.789 12.979 0.998 14.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.095 3.905 3 N -0.238 5.238 4 C 0.206 3.794 5 O -0.260 6.260 6 N -0.230 5.230 7 C -0.043 4.043 8 S 0.061 5.939 9 C -0.220 4.220 10 C 0.363 3.637 11 O -0.417 6.417 12 N -0.342 5.342 13 C 0.148 3.852 14 H 0.076 0.924 15 C -0.597 4.597 16 H 0.108 0.892 17 C -0.185 4.185 18 N -0.503 5.503 19 Si 0.800 3.200 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.186 1.186 23 C 0.358 3.642 24 F -0.183 7.183 25 F -0.132 7.132 26 F -0.196 7.196 27 H 0.127 0.873 28 H 0.136 0.864 29 H 0.092 0.908 30 H 0.304 0.696 31 H 0.112 0.888 32 H 0.246 0.754 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.498 12.601 1.479 14.255 hybrid contribution -0.887 -0.285 -1.246 1.556 sum 5.611 12.316 0.234 13.536 Atomic orbital electron populations 1.21057 0.84839 1.05469 1.05756 1.22004 0.98482 0.84700 0.85318 1.67966 1.09288 1.30088 1.16444 1.20646 0.84059 0.85997 0.88733 1.84640 1.75872 1.28826 1.36685 1.68653 1.40842 0.97642 1.15904 1.22958 0.91081 0.95856 0.94393 1.87514 1.69679 1.20924 1.15805 1.21907 0.95097 0.96463 1.08506 1.17555 0.78176 0.83546 0.84373 1.90844 1.54233 1.64660 1.31957 1.45875 1.57906 1.22314 1.08128 1.19428 0.82195 0.82070 1.01493 0.92355 1.21134 1.33585 1.02985 1.01948 0.89210 1.25865 0.93634 0.98098 1.00878 1.70504 1.28330 1.16136 1.35351 0.85267 0.77770 0.78365 0.78598 1.19675 1.21108 1.18564 1.23194 0.95515 0.73856 0.71594 1.92998 1.91783 1.76596 1.56969 1.93385 1.83075 1.40927 1.95770 1.93070 1.95729 1.81679 1.49153 0.87316 0.86420 0.90767 0.69638 0.88833 0.75409 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.63 9.85 71.24 0.70 -1.93 16 2 C 0.24 6.52 6.86 42.90 0.29 6.82 16 3 N -0.51 -12.89 10.38 -300.63 -3.12 -16.01 16 4 C 0.51 12.48 8.69 180.51 1.57 14.05 16 5 O -0.45 -8.15 13.63 -85.86 -1.17 -9.32 16 6 N -0.50 -13.62 10.45 -308.50 -3.22 -16.84 16 7 C 0.22 6.25 7.14 85.27 0.61 6.86 16 8 S -0.10 -2.65 25.14 -56.49 -1.42 -4.07 16 9 C -0.21 -6.32 5.67 -19.79 -0.11 -6.43 16 10 C 0.58 21.24 4.46 86.60 0.39 21.63 16 11 O -0.54 -23.85 15.68 -4.11 -0.06 -23.92 16 12 N -0.69 -25.69 4.98 -449.58 -2.24 -27.93 16 13 C 0.25 11.70 2.21 44.25 0.10 11.80 16 14 H 0.06 3.09 7.58 -2.38 -0.02 3.07 16 15 C -0.56 -26.29 8.46 25.60 0.22 -26.08 16 16 H 0.09 3.88 7.74 -2.91 -0.02 3.86 16 17 C 0.02 1.04 5.20 84.66 0.44 1.48 16 18 N -0.87 -45.70 9.50 21.45 0.20 -45.50 16 19 Si 0.98 38.71 29.54 68.60 2.03 40.74 16 20 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 21 H -0.29 -11.43 7.11 99.48 0.71 -10.72 16 22 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 23 C 0.41 19.67 2.81 71.98 0.20 19.87 16 24 F -0.20 -8.98 16.94 44.97 0.76 -8.22 16 25 F -0.15 -7.96 12.91 44.97 0.58 -7.37 16 26 F -0.21 -9.87 15.67 44.97 0.70 -9.17 16 27 H 0.11 2.34 8.14 -2.38 -0.02 2.32 16 28 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.07 2.01 7.17 -2.39 -0.02 1.99 16 30 H 0.44 2.93 9.06 -74.06 -0.67 2.26 16 31 H 0.15 3.40 9.55 73.80 0.70 4.10 16 32 H 0.41 13.09 8.52 -92.71 -0.79 12.30 16 33 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 Total: -1.00 -62.47 321.72 -2.06 -64.53 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.50 Total: 15.02 kcal Atomic # 6 Polarization: 43.67 SS G_CDS: 4.40 Total: 48.08 kcal Atomic # 7 Polarization: -97.91 SS G_CDS: -8.38 Total: -106.29 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -1.23 Total: -33.24 kcal Atomic # 9 Polarization: -26.81 SS G_CDS: 2.05 Total: -24.76 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Atomic # 16 Polarization: -2.65 SS G_CDS: -1.42 Total: -4.07 kcal Total: -62.47 -2.06 -64.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348359592.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.086 kcal (2) G-P(sol) polarization free energy of solvation -62.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds