Wall clock time and date at job start Tue Mar 31 2020 20:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 109.47085 * 2 1 4 4 N 1.31932 * 119.02225 * 90.00021 * 3 2 1 5 5 C 1.32136 * 121.05964 * 179.97438 * 4 3 2 6 6 C 1.38989 * 119.12112 * 359.97438 * 5 4 3 7 7 Cl 1.73605 * 120.88260 * 179.97438 * 6 5 4 8 8 C 1.39630 * 118.23341 * 0.02562 * 6 5 4 9 9 C 1.48362 * 120.56713 * 179.97438 * 8 6 5 10 10 O 1.21494 * 119.99941 * 359.97438 * 9 8 6 11 11 N 1.34781 * 120.00189 * 180.02562 * 9 8 6 12 12 C 1.46497 * 120.00108 * 179.97438 * 11 9 8 13 13 H 1.09005 * 109.47370 * 324.99890 * 12 11 9 14 14 C 1.50694 * 109.47344 * 204.99510 * 12 11 9 15 15 H 1.07998 * 120.00095 * 274.94051 * 14 12 11 16 16 C 1.37880 * 119.99945 * 94.93964 * 14 12 11 17 17 N 1.31518 * 120.00197 * 184.87906 * 16 14 12 18 18 Si 1.86796 * 120.00058 * 4.88146 * 16 14 12 19 19 H 1.48493 * 109.47352 * 84.80981 * 18 16 14 20 20 H 1.48507 * 109.47253 * 204.81009 * 18 16 14 21 21 H 1.48502 * 109.47328 * 324.81014 * 18 16 14 22 22 C 1.53004 * 109.47170 * 84.99295 * 12 11 9 23 23 F 1.39900 * 109.46910 * 174.94034 * 22 12 11 24 24 F 1.39901 * 109.47073 * 54.93859 * 22 12 11 25 25 F 1.39899 * 109.47472 * 294.93782 * 22 12 11 26 26 N 1.31522 * 119.01889 * 270.22905 * 3 2 1 27 27 H 1.09009 * 109.46947 * 60.00350 * 1 2 3 28 28 H 1.08999 * 109.47490 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47399 * 300.00473 * 1 2 3 30 30 H 1.09000 * 109.47399 * 239.99527 * 2 1 3 31 31 H 1.09005 * 109.46498 * 119.99832 * 2 1 3 32 32 H 1.07996 * 120.43942 * 179.97438 * 5 4 3 33 33 H 0.96996 * 119.99930 * 359.97438 * 11 9 8 34 34 H 0.96991 * 120.00137 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2457 2.0242 1.1537 5 6 2.6863 3.2690 1.2006 6 6 2.9270 3.9467 0.0112 7 17 3.5057 5.5834 0.0196 8 6 2.6900 3.2764 -1.1905 9 6 2.9290 3.9506 -2.4903 10 8 3.3339 5.0958 -2.5152 11 7 2.6959 3.2931 -3.6435 12 6 2.9313 3.9590 -4.9269 13 1 2.6802 5.0161 -4.8393 14 6 2.0695 3.3243 -5.9878 15 1 2.4116 2.4390 -6.5031 16 6 0.8442 3.8738 -6.3004 17 7 0.0506 3.2674 -7.1560 18 14 0.3113 5.4796 -5.5087 19 1 0.8649 6.6202 -6.2816 20 1 -1.1716 5.5598 -5.5015 21 1 0.8168 5.5353 -4.1135 22 6 4.4047 3.8153 -5.3134 23 9 4.6060 4.3495 -6.5906 24 9 4.7569 2.4613 -5.3134 25 9 5.1985 4.5036 -4.3897 26 7 2.2406 2.0238 -1.1501 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.8572 3.7535 2.1506 33 1 2.3723 2.3789 -3.6236 34 1 -0.8116 3.6537 -7.3757 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361639884.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:17 Heat of formation + Delta-G solvation = -149.665915 kcal Electronic energy + Delta-G solvation = -27613.842845 eV Core-core repulsion = 22964.940772 eV Total energy + Delta-G solvation = -4648.902073 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.055 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.10351 -46.62614 -46.58040 -41.43627 -38.98723 -36.75904 -34.95937 -34.33794 -34.14267 -32.58926 -30.61400 -29.34259 -25.71900 -25.12627 -25.00418 -22.66004 -21.37481 -20.32141 -18.74290 -18.18970 -17.55406 -17.45132 -16.77789 -16.58388 -16.18237 -15.68164 -15.33589 -15.20744 -14.29935 -14.25331 -13.95400 -13.87193 -13.53595 -13.49624 -13.09149 -13.02784 -12.85046 -12.79060 -12.73396 -12.59409 -12.15191 -11.90705 -11.82669 -11.47968 -11.30138 -11.22749 -11.20224 -11.00787 -10.76106 -10.21491 -10.11406 -9.88024 -9.30013 -9.19334 -9.00730 -8.52782 -6.59082 -4.74537 0.27343 0.58000 1.89502 2.86723 3.03191 3.15585 3.21009 3.24802 3.57975 3.63583 3.76289 3.89668 4.04588 4.32317 4.52341 4.72069 4.81650 4.98734 5.09867 5.12018 5.15257 5.26826 5.37819 5.52819 5.70011 5.83853 5.92376 6.09777 6.18730 6.47953 6.81391 6.97144 7.67224 7.79191 8.15870 8.46479 8.58663 8.96183 10.49053 Molecular weight = 337.05amu Principal moments of inertia in cm(-1) A = 0.010841 B = 0.005137 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.229681 B = 5448.815351 C = 6128.059762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.055 4.055 3 C 0.318 3.682 4 N -0.495 5.495 5 C 0.162 3.838 6 C -0.112 4.112 7 Cl -0.001 7.001 8 C 0.155 3.845 9 C 0.546 3.454 10 O -0.508 6.508 11 N -0.684 5.684 12 C 0.201 3.799 13 H 0.093 0.907 14 C -0.535 4.535 15 H 0.096 0.904 16 C 0.102 3.898 17 N -0.854 5.854 18 Si 0.865 3.135 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.255 1.255 22 C 0.439 3.561 23 F -0.180 7.180 24 F -0.191 7.191 25 F -0.195 7.195 26 N -0.473 5.473 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.183 0.817 33 H 0.411 0.589 34 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.311 -2.797 14.953 15.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.094 4.094 3 C 0.051 3.949 4 N -0.209 5.209 5 C -0.006 4.006 6 C -0.144 4.144 7 Cl 0.028 6.972 8 C 0.005 3.995 9 C 0.327 3.673 10 O -0.382 6.382 11 N -0.336 5.336 12 C 0.098 3.902 13 H 0.110 0.890 14 C -0.572 4.572 15 H 0.114 0.886 16 C -0.109 4.109 17 N -0.486 5.486 18 Si 0.690 3.310 19 H -0.188 1.188 20 H -0.204 1.204 21 H -0.179 1.179 22 C 0.383 3.617 23 F -0.161 7.161 24 F -0.172 7.172 25 F -0.177 7.177 26 N -0.190 5.190 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.199 0.801 33 H 0.249 0.751 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.167 -2.751 14.719 15.130 hybrid contribution 0.107 1.374 0.369 1.427 sum 2.274 -1.377 15.088 15.320 Atomic orbital electron populations 1.21718 0.93177 1.02810 1.02699 1.20420 0.97065 0.87175 1.04725 1.23387 0.91004 0.97630 0.82843 1.68280 1.12847 1.09414 1.30408 1.23366 0.90581 0.89423 0.97274 1.22911 1.03875 0.91612 0.96036 1.98434 1.85780 1.14409 1.98611 1.22041 0.92646 0.89959 0.94807 1.18073 0.79693 0.86396 0.83104 1.90852 1.44796 1.16118 1.86465 1.47476 1.63387 1.18445 1.04294 1.20123 0.86956 0.98717 0.84367 0.88982 1.20716 1.02609 1.15504 1.18409 0.88612 1.24992 0.95353 0.97037 0.93523 1.69847 1.09720 1.38181 1.30900 0.86973 0.78642 0.83849 0.81550 1.18813 1.20383 1.17882 1.21638 0.92523 0.73035 0.74525 1.93115 1.95925 1.86236 1.40830 1.93079 1.93707 1.34141 1.96312 1.93148 1.77873 1.79955 1.66701 1.68383 1.11694 1.08167 1.30736 0.91802 0.91145 0.92410 0.88455 0.88905 0.80053 0.75069 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.89 37.16 0.37 -0.97 16 2 C -0.05 -0.54 6.36 -27.89 -0.18 -0.72 16 3 C 0.32 4.22 6.89 -157.31 -1.08 3.14 16 4 N -0.50 -6.23 10.31 -10.70 -0.11 -6.34 16 5 C 0.16 1.92 11.14 -17.14 -0.19 1.73 16 6 C -0.11 -1.64 6.40 -38.78 -0.25 -1.89 16 7 Cl 0.00 -0.02 26.25 -51.86 -1.36 -1.38 16 8 C 0.15 2.65 6.79 -82.61 -0.56 2.09 16 9 C 0.55 11.00 7.47 -12.09 -0.09 10.91 16 10 O -0.51 -11.07 12.71 5.37 0.07 -11.01 16 11 N -0.68 -14.26 4.90 -55.71 -0.27 -14.53 16 12 C 0.20 4.61 1.71 -69.08 -0.12 4.49 16 13 H 0.09 2.21 4.73 -51.93 -0.25 1.96 16 14 C -0.54 -13.52 8.52 -34.44 -0.29 -13.81 16 15 H 0.10 2.61 8.00 -52.49 -0.42 2.19 16 16 C 0.10 2.63 5.47 -17.82 -0.10 2.53 16 17 N -0.85 -23.13 13.96 55.43 0.77 -22.36 16 18 Si 0.87 19.91 26.99 -169.99 -4.59 15.32 16 19 H -0.26 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.25 -5.94 6.82 56.52 0.39 -5.55 16 22 C 0.44 9.72 2.83 37.16 0.11 9.83 16 23 F -0.18 -4.03 16.89 2.25 0.04 -3.99 16 24 F -0.19 -4.11 16.93 2.25 0.04 -4.07 16 25 F -0.20 -4.26 15.83 2.25 0.04 -4.23 16 26 N -0.47 -7.45 9.59 -7.32 -0.07 -7.52 16 27 H 0.06 0.69 8.14 -51.92 -0.42 0.26 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.18 1.45 8.06 -52.49 -0.42 1.02 16 33 H 0.41 8.14 7.98 -40.82 -0.33 7.81 16 34 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 326.69 15.07 4.92 4.92 Total: -1.00 -28.40 326.69 -5.59 -33.99 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -2.68 Total: 3.88 kcal Atomic # 6 Polarization: 19.71 SS G_CDS: -2.39 Total: 17.32 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: 0.32 Total: -50.75 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.07 Total: -11.01 kcal Atomic # 9 Polarization: -12.41 SS G_CDS: 0.11 Total: -12.30 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.59 Total: 15.32 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -1.36 Total: -1.38 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.40 -5.59 -33.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361639884.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.673 kcal (2) G-P(sol) polarization free energy of solvation -28.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds