Wall clock time and date at job start Tue Mar 31 2020 20:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 109.47085 * 2 1 4 4 N 1.31932 * 119.02225 * 90.00021 * 3 2 1 5 5 C 1.32136 * 121.05964 * 179.97438 * 4 3 2 6 6 C 1.38989 * 119.12112 * 359.97438 * 5 4 3 7 7 Cl 1.73605 * 120.88260 * 179.97438 * 6 5 4 8 8 C 1.39630 * 118.23341 * 0.02562 * 6 5 4 9 9 C 1.48362 * 120.56713 * 179.97438 * 8 6 5 10 10 O 1.21494 * 119.99941 * 359.97438 * 9 8 6 11 11 N 1.34781 * 120.00189 * 180.02562 * 9 8 6 12 12 C 1.46497 * 120.00108 * 179.97438 * 11 9 8 13 13 H 1.09005 * 109.47370 * 324.99890 * 12 11 9 14 14 C 1.50694 * 109.47344 * 204.99510 * 12 11 9 15 15 H 1.07998 * 120.00095 * 274.94051 * 14 12 11 16 16 C 1.37880 * 119.99945 * 94.93964 * 14 12 11 17 17 N 1.31518 * 120.00197 * 184.87906 * 16 14 12 18 18 Si 1.86796 * 120.00058 * 4.88146 * 16 14 12 19 19 H 1.48493 * 109.47352 * 84.80981 * 18 16 14 20 20 H 1.48507 * 109.47253 * 204.81009 * 18 16 14 21 21 H 1.48502 * 109.47328 * 324.81014 * 18 16 14 22 22 C 1.53004 * 109.47170 * 84.99295 * 12 11 9 23 23 F 1.39900 * 109.46910 * 174.94034 * 22 12 11 24 24 F 1.39901 * 109.47073 * 54.93859 * 22 12 11 25 25 F 1.39899 * 109.47472 * 294.93782 * 22 12 11 26 26 N 1.31522 * 119.01889 * 270.22905 * 3 2 1 27 27 H 1.09009 * 109.46947 * 60.00350 * 1 2 3 28 28 H 1.08999 * 109.47490 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47399 * 300.00473 * 1 2 3 30 30 H 1.09000 * 109.47399 * 239.99527 * 2 1 3 31 31 H 1.09005 * 109.46498 * 119.99832 * 2 1 3 32 32 H 1.07996 * 120.43942 * 179.97438 * 5 4 3 33 33 H 0.96996 * 119.99930 * 359.97438 * 11 9 8 34 34 H 0.96991 * 120.00137 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2457 2.0242 1.1537 5 6 2.6863 3.2690 1.2006 6 6 2.9270 3.9467 0.0112 7 17 3.5057 5.5834 0.0196 8 6 2.6900 3.2764 -1.1905 9 6 2.9290 3.9506 -2.4903 10 8 3.3339 5.0958 -2.5152 11 7 2.6959 3.2931 -3.6435 12 6 2.9313 3.9590 -4.9269 13 1 2.6802 5.0161 -4.8393 14 6 2.0695 3.3243 -5.9878 15 1 2.4116 2.4390 -6.5031 16 6 0.8442 3.8738 -6.3004 17 7 0.0506 3.2674 -7.1560 18 14 0.3113 5.4796 -5.5087 19 1 0.8649 6.6202 -6.2816 20 1 -1.1716 5.5598 -5.5015 21 1 0.8168 5.5353 -4.1135 22 6 4.4047 3.8153 -5.3134 23 9 4.6060 4.3495 -6.5906 24 9 4.7569 2.4613 -5.3134 25 9 5.1985 4.5036 -4.3897 26 7 2.2406 2.0238 -1.1501 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.8572 3.7535 2.1506 33 1 2.3723 2.3789 -3.6236 34 1 -0.8116 3.6537 -7.3757 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361639884.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:16 Heat of formation + Delta-G solvation = -167.839381 kcal Electronic energy + Delta-G solvation = -27614.630906 eV Core-core repulsion = 22964.940772 eV Total energy + Delta-G solvation = -4649.690134 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.055 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.91409 -48.42340 -48.39761 -42.55943 -40.55283 -37.89897 -36.72365 -35.32758 -35.25095 -34.47441 -31.63863 -31.08111 -27.06948 -26.84259 -26.06401 -23.89933 -22.83932 -21.86213 -20.39393 -19.54930 -19.30152 -18.96632 -18.47866 -18.43304 -17.33775 -17.04606 -16.85537 -16.49714 -15.88692 -15.46749 -15.31488 -15.29491 -15.03885 -14.92763 -14.85333 -14.76023 -14.59926 -14.54677 -14.41251 -13.84373 -13.73497 -13.10580 -13.08225 -12.74651 -12.68036 -12.60000 -12.23380 -12.17873 -12.03939 -11.95110 -11.88946 -11.49644 -11.03477 -10.44925 -10.40438 -10.20532 -8.58925 -6.77835 -0.93251 -0.44894 0.77099 1.22067 1.29041 1.37215 1.46373 1.68764 2.03871 2.13066 2.44021 2.50824 2.73106 2.86769 3.08665 3.28611 3.29369 3.36223 3.58519 3.77768 4.15339 4.29436 4.34199 4.40572 4.59429 4.87525 4.98116 5.02182 5.10097 5.24417 5.33950 5.42848 5.82747 6.39134 6.43601 6.67808 6.94436 6.97709 8.53238 Molecular weight = 337.05amu Principal moments of inertia in cm(-1) A = 0.010841 B = 0.005137 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.229681 B = 5448.815351 C = 6128.059762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.055 4.055 3 C 0.316 3.684 4 N -0.489 5.489 5 C 0.182 3.818 6 C -0.116 4.116 7 Cl -0.005 7.005 8 C 0.130 3.870 9 C 0.544 3.456 10 O -0.527 6.527 11 N -0.687 5.687 12 C 0.209 3.791 13 H 0.085 0.915 14 C -0.537 4.537 15 H 0.069 0.931 16 C 0.066 3.934 17 N -0.892 5.892 18 Si 0.914 3.086 19 H -0.258 1.258 20 H -0.269 1.269 21 H -0.261 1.261 22 C 0.441 3.559 23 F -0.182 7.182 24 F -0.187 7.187 25 F -0.191 7.191 26 N -0.492 5.492 27 H 0.042 0.958 28 H 0.092 0.908 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.226 0.774 33 H 0.416 0.584 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.208 -2.962 17.495 17.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.094 4.094 3 C 0.049 3.951 4 N -0.203 5.203 5 C 0.013 3.987 6 C -0.149 4.149 7 Cl 0.024 6.976 8 C -0.017 4.017 9 C 0.328 3.672 10 O -0.403 6.403 11 N -0.339 5.339 12 C 0.105 3.895 13 H 0.102 0.898 14 C -0.574 4.574 15 H 0.087 0.913 16 C -0.141 4.141 17 N -0.526 5.526 18 Si 0.738 3.262 19 H -0.182 1.182 20 H -0.194 1.194 21 H -0.185 1.185 22 C 0.385 3.615 23 F -0.163 7.163 24 F -0.169 7.169 25 F -0.173 7.173 26 N -0.209 5.209 27 H 0.061 0.939 28 H 0.111 0.889 29 H 0.077 0.923 30 H 0.118 0.882 31 H 0.134 0.866 32 H 0.242 0.758 33 H 0.254 0.746 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.065 -2.932 17.264 17.632 hybrid contribution 0.197 1.345 -0.318 1.396 sum 2.262 -1.586 16.946 17.170 Atomic orbital electron populations 1.21696 0.92593 1.04010 1.01654 1.20607 0.97384 0.85351 1.06014 1.24052 0.90016 0.98706 0.82327 1.68436 1.12488 1.09584 1.29766 1.24050 0.88143 0.88781 0.97762 1.23050 1.04117 0.91562 0.96163 1.98433 1.85829 1.14687 1.98604 1.21563 0.95283 0.91052 0.93837 1.18402 0.78756 0.86154 0.83874 1.90828 1.45469 1.16949 1.87050 1.47071 1.64147 1.18639 1.04063 1.19855 0.86947 0.98109 0.84598 0.89758 1.20640 1.02981 1.14698 1.19108 0.91331 1.25532 0.95400 0.99318 0.93867 1.69912 1.10465 1.39709 1.32485 0.86206 0.78740 0.80958 0.80338 1.18206 1.19403 1.18514 1.21497 0.92300 0.73219 0.74464 1.93109 1.95924 1.86283 1.41007 1.93084 1.93635 1.33867 1.96292 1.93154 1.77678 1.79889 1.66543 1.68354 1.12482 1.07806 1.32222 0.93904 0.88880 0.92312 0.88194 0.86570 0.75815 0.74564 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.89 71.98 0.71 -1.59 16 2 C -0.05 -0.95 6.36 29.85 0.19 -0.76 16 3 C 0.32 7.70 6.89 138.79 0.96 8.65 16 4 N -0.49 -10.77 10.31 -187.77 -1.94 -12.71 16 5 C 0.18 3.70 11.14 84.83 0.94 4.65 16 6 C -0.12 -3.19 6.40 22.79 0.15 -3.04 16 7 Cl 0.00 -0.13 26.25 -2.72 -0.07 -0.20 16 8 C 0.13 4.34 6.79 41.98 0.29 4.63 16 9 C 0.54 21.77 7.47 86.94 0.65 22.42 16 10 O -0.53 -22.77 12.71 -3.70 -0.05 -22.81 16 11 N -0.69 -28.74 4.90 -448.48 -2.20 -30.94 16 12 C 0.21 9.64 1.71 44.25 0.08 9.72 16 13 H 0.08 4.04 4.73 -2.38 -0.01 4.03 16 14 C -0.54 -27.61 8.52 25.60 0.22 -27.40 16 15 H 0.07 3.86 8.00 -2.91 -0.02 3.83 16 16 C 0.07 3.45 5.47 84.65 0.46 3.91 16 17 N -0.89 -48.96 13.96 21.45 0.30 -48.67 16 18 Si 0.91 41.06 26.99 68.60 1.85 42.92 16 19 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.26 -11.89 6.82 99.48 0.68 -11.21 16 22 C 0.44 19.56 2.83 71.98 0.20 19.76 16 23 F -0.18 -8.17 16.89 44.97 0.76 -7.41 16 24 F -0.19 -8.08 16.93 44.97 0.76 -7.32 16 25 F -0.19 -8.27 15.83 44.97 0.71 -7.55 16 26 N -0.49 -14.95 9.59 -177.06 -1.70 -16.64 16 27 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.12 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.23 2.53 8.06 -2.91 -0.02 2.50 16 33 H 0.42 16.66 7.98 -92.71 -0.74 15.92 16 34 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -60.89 326.69 3.70 -57.19 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.43 Total: 13.20 kcal Atomic # 6 Polarization: 36.11 SS G_CDS: 4.85 Total: 40.95 kcal Atomic # 7 Polarization: -103.43 SS G_CDS: -5.53 Total: -108.96 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.05 Total: -22.81 kcal Atomic # 9 Polarization: -24.51 SS G_CDS: 2.23 Total: -22.28 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 1.85 Total: 42.92 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -0.07 Total: -0.20 kcal Total: -60.89 3.70 -57.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361639884.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.652 kcal (2) G-P(sol) polarization free energy of solvation -60.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds