Wall clock time and date at job start Tue Mar 31 2020 20:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47087 * 2 1 4 4 N 1.29855 * 125.54124 * 89.95477 * 3 2 1 5 5 N 1.26255 * 117.78626 * 179.77069 * 4 3 2 6 6 C 1.30773 * 116.24562 * 0.49895 * 5 4 3 7 7 C 1.47274 * 126.19145 * 179.81522 * 6 5 4 8 8 O 1.21639 * 120.00130 * 179.68717 * 7 6 5 9 9 N 1.34770 * 120.00126 * 359.68599 * 7 6 5 10 10 C 1.39979 * 120.00666 * 184.37856 * 9 7 6 11 11 C 1.38742 * 120.07443 * 325.39015 * 10 9 7 12 12 C 1.38176 * 120.01263 * 180.27276 * 11 10 9 13 13 C 1.38557 * 120.18335 * 359.48553 * 12 11 10 14 14 F 1.35105 * 119.92264 * 180.27614 * 13 12 11 15 15 C 1.38347 * 120.15679 * 0.51301 * 13 12 11 16 16 C 1.38732 * 119.98221 * 359.74519 * 15 13 12 17 17 O 1.35766 * 120.09083 * 180.02562 * 16 15 13 18 18 C 1.34806 * 117.00291 * 5.42344 * 17 16 15 19 19 H 1.08007 * 119.99611 * 354.95473 * 18 17 16 20 20 C 1.38628 * 120.00174 * 174.95954 * 18 17 16 21 21 N 1.31569 * 120.00100 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00186 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47076 * 90.00263 * 22 20 18 24 24 H 1.48498 * 109.47369 * 210.00140 * 22 20 18 25 25 H 1.48498 * 109.47074 * 330.00350 * 22 20 18 26 26 S 1.71273 * 125.54177 * 270.00227 * 3 2 1 27 27 H 1.08995 * 109.47097 * 299.99877 * 1 2 3 28 28 H 1.09000 * 109.47145 * 60.00188 * 1 2 3 29 29 H 1.09006 * 109.46755 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47603 * 239.99971 * 2 1 3 31 31 H 1.09007 * 109.46791 * 119.99900 * 2 1 3 32 32 H 0.97002 * 119.99943 * 4.38468 * 9 7 6 33 33 H 1.07998 * 119.99243 * 359.97438 * 11 10 9 34 34 H 1.08001 * 119.90767 * 179.72144 * 12 11 10 35 35 H 1.08005 * 120.00687 * 179.76240 * 15 13 12 36 36 H 0.97003 * 120.00588 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2832 2.1327 1.0566 5 7 2.7045 3.3107 0.8863 6 6 2.8380 3.7034 -0.3539 7 6 3.3056 5.0262 -0.8017 8 8 3.3927 5.2703 -1.9901 9 7 3.6370 5.9663 0.1053 10 6 3.9934 7.2522 -0.3176 11 6 4.6879 7.4257 -1.5060 12 6 5.0440 8.6952 -1.9194 13 6 4.7001 9.7987 -1.1554 14 9 5.0461 11.0380 -1.5674 15 6 4.0075 9.6342 0.0309 16 6 3.6513 8.3623 0.4550 17 8 2.9712 8.1983 1.6185 18 6 2.5740 9.3165 2.2582 19 1 2.8699 10.2860 1.8851 20 6 1.7860 9.2221 3.3948 21 7 1.3981 10.3135 4.0188 22 14 1.2738 7.5455 4.0397 23 1 2.2898 7.0550 5.0053 24 1 -0.0417 7.6573 4.7195 25 1 1.1662 6.5912 2.9070 26 16 2.3641 2.3595 -1.3936 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 3.6286 5.7519 1.0513 33 1 4.9545 6.5680 -2.1057 34 1 5.5886 8.8279 -2.8426 35 1 3.7440 10.4958 0.6265 36 1 0.8464 10.2476 4.8139 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362244571.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:43 Heat of formation + Delta-G solvation = -11.923001 kcal Electronic energy + Delta-G solvation = -25587.347936 eV Core-core repulsion = 21500.692080 eV Total energy + Delta-G solvation = -4086.655856 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.068 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.37024 -41.48469 -40.31077 -38.83664 -36.59948 -34.99842 -34.44057 -32.55954 -31.16734 -29.69928 -28.68640 -27.22361 -25.50482 -24.19354 -23.14605 -22.10234 -21.46927 -19.87186 -19.41669 -18.45333 -18.15475 -17.44867 -16.81667 -16.24004 -15.68396 -15.42548 -15.20826 -15.00488 -14.93421 -14.57012 -14.28907 -14.13222 -13.90970 -13.70883 -13.55275 -13.35871 -13.03075 -12.53291 -12.42452 -12.26592 -11.94846 -11.75960 -11.54885 -11.09776 -10.94886 -10.86893 -10.62099 -10.44431 -10.16137 -10.08408 -10.02289 -9.89150 -9.65742 -9.03556 -8.09586 -7.39946 -6.58352 -4.26174 -0.28851 0.41501 0.96965 1.54733 1.92259 2.00114 2.87176 3.04125 3.14349 3.18367 3.31982 3.64353 4.09222 4.09927 4.15737 4.38379 4.44324 4.66216 4.77536 4.87035 4.88441 4.93226 5.19381 5.32067 5.39766 5.45920 5.60326 5.71257 5.80149 5.90830 6.26112 6.59756 6.71061 6.73953 6.76892 7.35355 7.40131 7.57162 7.81040 7.99375 8.16981 8.74046 9.26811 10.47822 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.010349 B = 0.004033 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.859965 B = 6941.597922 C = 9418.241893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.044 4.044 3 C -0.007 4.007 4 N -0.264 5.264 5 N -0.207 5.207 6 C -0.049 4.049 7 C 0.596 3.404 8 O -0.515 6.515 9 N -0.619 5.619 10 C 0.047 3.953 11 C -0.044 4.044 12 C -0.225 4.225 13 C 0.139 3.861 14 F -0.146 7.146 15 C -0.247 4.247 16 C 0.173 3.827 17 O -0.202 6.202 18 C -0.393 4.393 19 H 0.111 0.889 20 C 0.070 3.930 21 N -0.867 5.867 22 Si 0.900 3.100 23 H -0.269 1.269 24 H -0.280 1.280 25 H -0.256 1.256 26 S 0.227 5.773 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.422 0.578 33 H 0.144 0.856 34 H 0.127 0.873 35 H 0.152 0.848 36 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.418 -18.789 -9.765 21.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.086 4.086 3 C -0.283 4.283 4 N -0.104 5.104 5 N -0.050 5.050 6 C -0.328 4.328 7 C 0.377 3.623 8 O -0.390 6.390 9 N -0.263 5.263 10 C -0.047 4.047 11 C -0.064 4.064 12 C -0.245 4.245 13 C 0.119 3.881 14 F -0.125 7.125 15 C -0.268 4.268 16 C 0.117 3.883 17 O -0.106 6.106 18 C -0.468 4.468 19 H 0.128 0.872 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.725 3.275 23 H -0.194 1.194 24 H -0.205 1.205 25 H -0.180 1.180 26 S 0.471 5.529 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.260 0.740 33 H 0.161 0.839 34 H 0.145 0.855 35 H 0.169 0.831 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.279 -18.636 -9.974 21.176 hybrid contribution -0.314 -0.194 1.009 1.074 sum 0.966 -18.830 -8.964 20.878 Atomic orbital electron populations 1.21820 0.92757 1.03164 1.03178 1.20253 0.97196 0.86002 1.05121 1.29645 1.02010 1.04203 0.92471 1.71335 1.13211 0.98976 1.26905 1.72085 1.10073 1.06287 1.16603 1.29628 1.08497 1.01848 0.92806 1.16426 0.78465 0.81462 0.85907 1.90845 1.53840 1.79066 1.15295 1.42769 1.63656 1.08876 1.10955 1.16813 1.08119 0.81404 0.98346 1.20641 0.94232 0.97353 0.94223 1.20527 1.10067 0.91132 1.02786 1.17494 0.97554 0.79143 0.93920 1.91441 1.90259 1.40606 1.90209 1.20982 1.08218 0.98629 0.98941 1.18461 0.92271 0.90970 0.86570 1.83530 1.62536 1.35539 1.29011 1.20781 1.32322 0.84679 1.08992 0.87170 1.24466 0.94916 0.98976 0.95191 1.69638 1.33942 1.27792 1.18942 0.86255 0.78410 0.82821 0.80014 1.19417 1.20535 1.18001 1.84757 1.55869 1.03111 1.09161 0.91539 0.92106 0.90749 0.88890 0.87899 0.74009 0.83855 0.85467 0.83099 0.90670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.89 37.16 0.37 -0.49 16 2 C -0.04 -0.27 6.53 -27.88 -0.18 -0.46 16 3 C -0.01 -0.07 6.79 -13.11 -0.09 -0.16 16 4 N -0.26 -3.74 11.59 32.65 0.38 -3.36 16 5 N -0.21 -3.30 11.38 32.93 0.37 -2.92 16 6 C -0.05 -0.72 7.58 -14.33 -0.11 -0.83 16 7 C 0.60 10.00 7.65 -12.59 -0.10 9.90 16 8 O -0.52 -9.12 14.39 5.24 0.08 -9.05 16 9 N -0.62 -11.12 5.18 -10.73 -0.06 -11.18 16 10 C 0.05 0.92 6.33 -83.48 -0.53 0.39 16 11 C -0.04 -0.78 8.69 -39.42 -0.34 -1.12 16 12 C -0.22 -3.84 10.02 -39.49 -0.40 -4.24 16 13 C 0.14 2.63 7.29 -39.42 -0.29 2.34 16 14 F -0.15 -2.70 17.26 2.25 0.04 -2.66 16 15 C -0.25 -5.21 9.14 -39.36 -0.36 -5.57 16 16 C 0.17 3.77 6.67 -38.93 -0.26 3.51 16 17 O -0.20 -4.95 8.14 0.07 0.00 -4.95 16 18 C -0.39 -10.49 9.94 30.88 0.31 -10.19 16 19 H 0.11 3.02 5.44 -52.48 -0.29 2.73 16 20 C 0.07 1.88 5.49 -17.52 -0.10 1.78 16 21 N -0.87 -24.15 13.96 55.48 0.77 -23.37 16 22 Si 0.90 20.94 28.62 -169.99 -4.86 16.08 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.26 -6.00 7.11 56.52 0.40 -5.60 16 26 S 0.23 2.41 23.13 -107.50 -2.49 -0.08 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.10 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.42 7.49 8.26 -40.82 -0.34 7.15 16 33 H 0.14 2.35 6.19 -52.49 -0.32 2.02 16 34 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 35 H 0.15 3.33 5.64 -52.48 -0.30 3.04 16 36 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 339.60 15.07 5.12 5.12 Total: -1.00 -29.94 339.60 -5.63 -35.57 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -2.91 Total: 5.94 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -2.07 Total: -5.13 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 1.47 Total: -40.83 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.08 Total: -14.00 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.04 Total: -2.66 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.86 Total: 16.08 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -2.49 Total: -0.08 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.94 -5.63 -35.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362244571.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.644 kcal (2) G-P(sol) polarization free energy of solvation -29.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds