Wall clock time and date at job start Tue Mar 31 2020 20:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47087 * 2 1 4 4 N 1.29855 * 125.54124 * 89.95477 * 3 2 1 5 5 N 1.26255 * 117.78626 * 179.77069 * 4 3 2 6 6 C 1.30773 * 116.24562 * 0.49895 * 5 4 3 7 7 C 1.47274 * 126.19145 * 179.81522 * 6 5 4 8 8 O 1.21639 * 120.00130 * 179.68717 * 7 6 5 9 9 N 1.34770 * 120.00126 * 359.68599 * 7 6 5 10 10 C 1.39979 * 120.00666 * 184.37856 * 9 7 6 11 11 C 1.38742 * 120.07443 * 325.39015 * 10 9 7 12 12 C 1.38176 * 120.01263 * 180.27276 * 11 10 9 13 13 C 1.38557 * 120.18335 * 359.48553 * 12 11 10 14 14 F 1.35105 * 119.92264 * 180.27614 * 13 12 11 15 15 C 1.38347 * 120.15679 * 0.51301 * 13 12 11 16 16 C 1.38732 * 119.98221 * 359.74519 * 15 13 12 17 17 O 1.35766 * 120.09083 * 180.02562 * 16 15 13 18 18 C 1.34806 * 117.00291 * 5.42344 * 17 16 15 19 19 H 1.08007 * 119.99611 * 354.95473 * 18 17 16 20 20 C 1.38628 * 120.00174 * 174.95954 * 18 17 16 21 21 N 1.31569 * 120.00100 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00186 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47076 * 90.00263 * 22 20 18 24 24 H 1.48498 * 109.47369 * 210.00140 * 22 20 18 25 25 H 1.48498 * 109.47074 * 330.00350 * 22 20 18 26 26 S 1.71273 * 125.54177 * 270.00227 * 3 2 1 27 27 H 1.08995 * 109.47097 * 299.99877 * 1 2 3 28 28 H 1.09000 * 109.47145 * 60.00188 * 1 2 3 29 29 H 1.09006 * 109.46755 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47603 * 239.99971 * 2 1 3 31 31 H 1.09007 * 109.46791 * 119.99900 * 2 1 3 32 32 H 0.97002 * 119.99943 * 4.38468 * 9 7 6 33 33 H 1.07998 * 119.99243 * 359.97438 * 11 10 9 34 34 H 1.08001 * 119.90767 * 179.72144 * 12 11 10 35 35 H 1.08005 * 120.00687 * 179.76240 * 15 13 12 36 36 H 0.97003 * 120.00588 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2832 2.1327 1.0566 5 7 2.7045 3.3107 0.8863 6 6 2.8380 3.7034 -0.3539 7 6 3.3056 5.0262 -0.8017 8 8 3.3927 5.2703 -1.9901 9 7 3.6370 5.9663 0.1053 10 6 3.9934 7.2522 -0.3176 11 6 4.6879 7.4257 -1.5060 12 6 5.0440 8.6952 -1.9194 13 6 4.7001 9.7987 -1.1554 14 9 5.0461 11.0380 -1.5674 15 6 4.0075 9.6342 0.0309 16 6 3.6513 8.3623 0.4550 17 8 2.9712 8.1983 1.6185 18 6 2.5740 9.3165 2.2582 19 1 2.8699 10.2860 1.8851 20 6 1.7860 9.2221 3.3948 21 7 1.3981 10.3135 4.0188 22 14 1.2738 7.5455 4.0397 23 1 2.2898 7.0550 5.0053 24 1 -0.0417 7.6573 4.7195 25 1 1.1662 6.5912 2.9070 26 16 2.3641 2.3595 -1.3936 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 3.6286 5.7519 1.0513 33 1 4.9545 6.5680 -2.1057 34 1 5.5886 8.8279 -2.8426 35 1 3.7440 10.4958 0.6265 36 1 0.8464 10.2476 4.8139 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362244571.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:43 Heat of formation + Delta-G solvation = -31.693134 kcal Electronic energy + Delta-G solvation = -25588.205233 eV Core-core repulsion = 21500.692080 eV Total energy + Delta-G solvation = -4087.513153 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.068 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.89643 -42.53563 -41.75830 -40.40643 -38.22863 -35.96329 -35.56089 -34.53455 -32.19013 -31.28562 -30.08582 -28.24068 -27.36727 -25.12821 -24.32233 -23.55898 -22.83448 -21.08180 -20.46786 -20.15770 -19.76559 -18.81215 -18.18873 -17.41581 -17.24674 -16.97051 -16.67441 -16.27589 -16.00019 -15.86575 -15.71724 -15.56213 -15.29706 -15.05604 -14.92746 -14.54456 -14.31794 -13.97050 -13.71247 -13.61294 -13.19444 -12.78338 -12.70314 -12.50470 -12.28515 -12.25480 -11.98472 -11.73803 -11.61708 -11.36857 -11.18925 -11.07158 -10.98730 -10.89506 -9.71008 -8.99310 -8.57967 -6.31276 -1.27170 -0.51971 0.03614 0.05580 0.33912 0.88719 1.28871 1.31246 1.46766 1.63603 1.78141 2.20017 2.51563 2.62622 2.73188 2.96066 3.19747 3.30683 3.61050 3.83187 3.91170 4.10792 4.18068 4.20146 4.25842 4.39804 4.69377 4.74170 4.94889 5.01277 5.03646 5.10591 5.19646 5.25946 5.29297 5.52299 5.74190 5.95659 6.05503 6.60463 6.74639 7.17876 7.37427 8.52681 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.010349 B = 0.004033 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.859965 B = 6941.597922 C = 9418.241893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.047 4.047 3 C 0.007 3.993 4 N -0.298 5.298 5 N -0.229 5.229 6 C -0.090 4.090 7 C 0.603 3.397 8 O -0.525 6.525 9 N -0.628 5.628 10 C 0.057 3.943 11 C -0.042 4.042 12 C -0.191 4.191 13 C 0.131 3.869 14 F -0.142 7.142 15 C -0.257 4.257 16 C 0.147 3.853 17 O -0.223 6.223 18 C -0.401 4.401 19 H 0.088 0.912 20 C 0.023 3.977 21 N -0.912 5.912 22 Si 0.958 3.042 23 H -0.262 1.262 24 H -0.270 1.270 25 H -0.262 1.262 26 S 0.298 5.702 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.127 0.873 31 H 0.112 0.888 32 H 0.422 0.578 33 H 0.165 0.835 34 H 0.168 0.832 35 H 0.131 0.869 36 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.842 -22.319 -12.363 25.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.088 4.088 3 C -0.269 4.269 4 N -0.139 5.139 5 N -0.074 5.074 6 C -0.369 4.369 7 C 0.387 3.613 8 O -0.401 6.401 9 N -0.272 5.272 10 C -0.037 4.037 11 C -0.062 4.062 12 C -0.211 4.211 13 C 0.111 3.889 14 F -0.121 7.121 15 C -0.277 4.277 16 C 0.094 3.906 17 O -0.129 6.129 18 C -0.477 4.477 19 H 0.105 0.895 20 C -0.177 4.177 21 N -0.552 5.552 22 Si 0.781 3.219 23 H -0.186 1.186 24 H -0.195 1.195 25 H -0.186 1.186 26 S 0.543 5.457 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.145 0.855 31 H 0.130 0.870 32 H 0.259 0.741 33 H 0.182 0.818 34 H 0.186 0.814 35 H 0.148 0.852 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.727 -22.181 -12.623 25.580 hybrid contribution -0.324 0.732 1.467 1.671 sum 1.403 -21.449 -11.156 24.217 Atomic orbital electron populations 1.21848 0.92159 1.04582 1.02286 1.20615 0.97462 0.83484 1.07279 1.30444 0.99165 1.05382 0.91885 1.71333 1.15175 0.98955 1.28484 1.72063 1.10304 1.07380 1.17684 1.29326 1.10988 1.02413 0.94136 1.16588 0.77416 0.81842 0.85473 1.90813 1.54230 1.79598 1.15507 1.42855 1.64412 1.08639 1.11325 1.17046 1.06960 0.81551 0.98167 1.20948 0.93412 0.98349 0.93451 1.20975 1.07300 0.89836 1.02941 1.17532 0.97810 0.80038 0.93537 1.91453 1.90158 1.40493 1.89997 1.20983 1.08897 0.97962 0.99884 1.18834 0.92795 0.92161 0.86771 1.83496 1.64750 1.34150 1.30523 1.20685 1.32689 0.84758 1.09523 0.89484 1.25141 0.95105 1.02017 0.95457 1.69711 1.35895 1.29473 1.20097 0.85390 0.78530 0.78775 0.79230 1.18628 1.19473 1.18643 1.84461 1.53860 1.00157 1.07237 0.93546 0.91911 0.88231 0.85464 0.86977 0.74097 0.81752 0.81426 0.85180 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.89 71.98 0.71 -0.53 16 2 C -0.05 -0.41 6.53 29.85 0.20 -0.22 16 3 C 0.01 0.12 6.79 88.40 0.60 0.72 16 4 N -0.30 -8.09 11.59 -50.61 -0.59 -8.68 16 5 N -0.23 -7.19 11.38 -49.71 -0.57 -7.76 16 6 C -0.09 -2.58 7.58 87.23 0.66 -1.92 16 7 C 0.60 19.59 7.65 86.62 0.66 20.26 16 8 O -0.53 -17.49 14.39 -4.16 -0.06 -17.55 16 9 N -0.63 -22.44 5.18 -306.11 -1.59 -24.03 16 10 C 0.06 2.19 6.33 38.27 0.24 2.43 16 11 C -0.04 -1.36 8.69 22.38 0.19 -1.16 16 12 C -0.19 -5.90 10.02 22.33 0.22 -5.68 16 13 C 0.13 4.81 7.29 22.37 0.16 4.98 16 14 F -0.14 -5.08 17.26 44.97 0.78 -4.30 16 15 C -0.26 -11.16 9.14 22.41 0.20 -10.95 16 16 C 0.15 6.59 6.67 22.69 0.15 6.74 16 17 O -0.22 -11.38 8.14 -22.67 -0.18 -11.57 16 18 C -0.40 -22.64 9.94 67.91 0.68 -21.97 16 19 H 0.09 5.16 5.44 -2.91 -0.02 5.14 16 20 C 0.02 1.30 5.49 84.83 0.47 1.77 16 21 N -0.91 -53.20 13.96 21.61 0.30 -52.90 16 22 Si 0.96 44.64 28.62 68.60 1.96 46.61 16 23 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 25 H -0.26 -12.31 7.11 99.48 0.71 -11.60 16 26 S 0.30 5.47 23.13 -56.49 -1.31 4.16 16 27 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.10 0.37 8.14 -2.38 -0.02 0.35 16 30 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.42 15.23 8.26 -92.71 -0.77 14.47 16 33 H 0.17 4.79 6.19 -2.91 -0.02 4.77 16 34 H 0.17 3.93 8.06 -2.91 -0.02 3.91 16 35 H 0.13 6.18 5.64 -2.91 -0.02 6.16 16 36 H 0.29 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -68.10 339.60 4.32 -63.79 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.41 Total: 17.77 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: 5.15 Total: -5.54 kcal Atomic # 7 Polarization: -90.93 SS G_CDS: -2.44 Total: -93.36 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.24 Total: -29.12 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 0.78 Total: -4.30 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.96 Total: 46.61 kcal Atomic # 16 Polarization: 5.47 SS G_CDS: -1.31 Total: 4.16 kcal Total: -68.10 4.32 -63.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362244571.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.092 kcal (2) G-P(sol) polarization free energy of solvation -68.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds