Wall clock time and date at job start Tue Mar 31 2020 20:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35780 * 117.00055 * 2 1 4 4 C 1.40339 * 120.90692 * 270.02187 * 3 2 1 5 5 O 1.35552 * 120.48845 * 359.97438 * 4 3 2 6 6 N 1.32411 * 119.02013 * 179.72753 * 4 3 2 7 7 C 1.32495 * 120.98467 * 0.51017 * 6 4 3 8 8 O 1.35534 * 118.99765 * 179.75418 * 7 6 4 9 9 N 1.31855 * 122.00495 * 359.47410 * 7 6 4 10 10 C 1.33533 * 120.87389 * 0.26058 * 9 7 6 11 11 C 1.48062 * 120.53693 * 179.97438 * 10 9 7 12 12 O 1.21525 * 120.00396 * 180.02562 * 11 10 9 13 13 N 1.34779 * 120.00179 * 359.97438 * 11 10 9 14 14 C 1.46495 * 120.00165 * 179.97438 * 13 11 10 15 15 H 1.08998 * 109.47235 * 35.00879 * 14 13 11 16 16 C 1.50710 * 109.47201 * 155.00240 * 14 13 11 17 17 H 1.07991 * 119.99475 * 0.02562 * 16 14 13 18 18 C 1.37871 * 119.99673 * 180.02562 * 16 14 13 19 19 N 1.31501 * 120.00610 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99537 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47323 * 90.00010 * 20 18 16 22 22 H 1.48502 * 109.47137 * 209.99956 * 20 18 16 23 23 H 1.48508 * 109.47140 * 330.00023 * 20 18 16 24 24 C 1.53000 * 109.47579 * 275.00337 * 14 13 11 25 25 F 1.39901 * 109.46769 * 60.00283 * 24 14 13 26 26 F 1.39899 * 109.47292 * 179.97438 * 24 14 13 27 27 F 1.39895 * 109.47153 * 300.00052 * 24 14 13 28 28 H 1.09004 * 109.47091 * 60.00238 * 1 2 3 29 29 H 1.08999 * 109.47600 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47329 * 299.99849 * 1 2 3 31 31 H 0.96705 * 113.99507 * 90.00143 * 5 4 3 32 32 H 0.96700 * 114.00259 * 269.72901 * 8 7 6 33 33 H 0.97000 * 119.99865 * 0.02562 * 13 11 10 34 34 H 0.97004 * 120.00412 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 2.3723 1.8523 -1.2041 5 8 2.0777 1.2740 -2.3942 6 7 2.9682 3.0339 -1.1605 7 6 3.2653 3.6057 -0.0028 8 8 3.8798 4.8137 -0.0052 9 7 2.9764 3.0378 1.1516 10 6 2.3709 1.8486 1.1977 11 6 2.0505 1.2174 2.4982 12 8 1.4997 0.1346 2.5288 13 7 2.3706 1.8434 3.6481 14 6 2.0530 1.2192 4.9348 15 1 2.1633 0.1380 4.8512 16 6 2.9933 1.7397 5.9913 17 1 3.7512 2.4633 5.7304 18 6 2.8858 1.2919 7.2908 19 7 1.9632 0.4103 7.6084 20 14 4.0508 1.9376 8.6005 21 1 3.4648 3.1475 9.2315 22 1 4.2613 0.8928 9.6346 23 1 5.3527 2.2861 7.9767 24 6 0.6122 1.5564 5.3236 25 9 -0.2607 1.0731 4.3428 26 9 0.3088 0.9598 6.5521 27 9 0.4707 2.9440 5.4309 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.2049 1.5071 -2.7393 32 1 4.8455 4.7638 -0.0059 33 1 2.8105 2.7075 3.6237 34 1 1.8878 0.0950 8.5227 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362938072.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:34 Heat of formation + Delta-G solvation = -215.375690 kcal Electronic energy + Delta-G solvation = -30591.914535 eV Core-core repulsion = 25499.453908 eV Total energy + Delta-G solvation = -5092.460627 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.076 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.43994 -46.09679 -45.69419 -41.79411 -39.24993 -38.86960 -37.70454 -36.87361 -34.81975 -33.68984 -32.56088 -30.46824 -28.73574 -27.04392 -25.50820 -24.61299 -23.86376 -22.04762 -20.65570 -19.61014 -19.14084 -18.59888 -17.92914 -17.63538 -16.92981 -16.73988 -16.65824 -16.34810 -15.82847 -15.57427 -15.11648 -14.99092 -14.47595 -14.35743 -14.18516 -13.29631 -13.16113 -13.02620 -12.94176 -12.59609 -12.48617 -12.46107 -12.34957 -12.07031 -12.04594 -11.89369 -11.43275 -11.24353 -11.00094 -10.92946 -10.82193 -10.74756 -10.47232 -9.98661 -9.73655 -9.36111 -9.14218 -8.78942 -8.41330 -6.29327 -4.53432 0.11861 0.30694 2.44606 2.61769 3.14034 3.17522 3.22507 3.25072 3.29040 3.33481 3.56033 4.13529 4.24229 4.46151 4.56410 4.61621 4.87439 5.06754 5.14815 5.36301 5.49688 5.69628 5.74167 5.77997 6.11416 6.15289 6.77385 6.80772 6.97780 7.04391 7.21992 7.36636 7.52092 7.57017 8.12091 8.40276 8.61058 9.14494 10.62466 Molecular weight = 337.08amu Principal moments of inertia in cm(-1) A = 0.016178 B = 0.004122 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.300482 B = 6791.032041 C = 7745.580161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.294 6.294 3 C 0.030 3.970 4 C 0.367 3.633 5 O -0.459 6.459 6 N -0.525 5.525 7 C 0.510 3.490 8 O -0.450 6.450 9 N -0.487 5.487 10 C 0.154 3.846 11 C 0.557 3.443 12 O -0.498 6.498 13 N -0.683 5.683 14 C 0.243 3.757 15 H 0.090 0.910 16 C -0.552 4.552 17 H 0.080 0.920 18 C 0.066 3.934 19 N -0.840 5.840 20 Si 0.917 3.083 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.269 1.269 24 C 0.417 3.583 25 F -0.220 7.220 26 F -0.134 7.134 27 F -0.207 7.207 28 H 0.038 0.962 29 H 0.104 0.896 30 H 0.058 0.942 31 H 0.408 0.592 32 H 0.415 0.585 33 H 0.411 0.589 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.427 3.532 -14.390 14.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.207 6.207 3 C -0.023 4.023 4 C 0.175 3.825 5 O -0.266 6.266 6 N -0.264 5.264 7 C 0.206 3.794 8 O -0.254 6.254 9 N -0.217 5.217 10 C 0.007 3.993 11 C 0.338 3.662 12 O -0.371 6.371 13 N -0.332 5.332 14 C 0.138 3.862 15 H 0.107 0.893 16 C -0.589 4.589 17 H 0.098 0.902 18 C -0.143 4.143 19 N -0.473 5.473 20 Si 0.743 3.257 21 H -0.201 1.201 22 H -0.208 1.208 23 H -0.194 1.194 24 C 0.361 3.639 25 F -0.202 7.202 26 F -0.115 7.115 27 F -0.189 7.189 28 H 0.056 0.944 29 H 0.122 0.878 30 H 0.076 0.924 31 H 0.268 0.732 32 H 0.275 0.725 33 H 0.247 0.753 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.448 3.279 -14.104 14.487 hybrid contribution 0.008 0.439 0.491 0.659 sum -0.441 3.718 -13.613 14.118 Atomic orbital electron populations 1.23031 0.77424 1.04382 1.00271 1.86106 1.20563 1.20621 1.93447 1.20452 1.00361 0.90029 0.91410 1.19553 0.91469 0.85784 0.85653 1.84799 1.40893 1.67744 1.33147 1.67300 1.16163 1.10652 1.32279 1.19688 0.92420 0.85324 0.81977 1.84761 1.25711 1.19954 1.94927 1.68049 1.13958 1.09522 1.30213 1.22316 0.92826 0.88740 0.95402 1.17532 0.80784 0.85349 0.82562 1.90859 1.40852 1.19320 1.86085 1.45991 1.58525 1.23719 1.05007 1.19887 0.87680 0.98030 0.80597 0.89267 1.20871 1.17376 1.28368 0.92273 0.90183 1.25070 0.95560 0.94863 0.98812 1.70379 1.29196 1.27491 1.20202 0.86179 0.80548 0.78633 0.80320 1.20143 1.20771 1.19394 1.23115 0.91404 0.73510 0.75843 1.93055 1.74310 1.88279 1.64510 1.93416 1.93932 1.82588 1.41602 1.93004 1.96786 1.32900 1.96190 0.94387 0.87786 0.92352 0.73229 0.72480 0.75309 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.55 101.05 1.07 1.57 16 2 O -0.29 -4.45 8.78 -46.77 -0.41 -4.86 16 3 C 0.03 0.44 5.81 -38.29 -0.22 0.22 16 4 C 0.37 4.69 7.86 -16.51 -0.13 4.56 16 5 O -0.46 -4.60 13.42 -30.75 -0.41 -5.02 16 6 N -0.53 -6.95 10.46 -14.65 -0.15 -7.10 16 7 C 0.51 6.83 8.69 -91.50 -0.80 6.04 16 8 O -0.45 -4.82 13.64 -18.30 -0.25 -5.07 16 9 N -0.49 -7.42 9.72 -11.31 -0.11 -7.53 16 10 C 0.15 2.56 6.79 -82.60 -0.56 2.00 16 11 C 0.56 11.01 7.35 -12.23 -0.09 10.92 16 12 O -0.50 -10.89 12.79 -16.05 -0.21 -11.10 16 13 N -0.68 -14.10 4.98 -55.81 -0.28 -14.38 16 14 C 0.24 5.88 2.21 -69.08 -0.15 5.73 16 15 H 0.09 2.37 7.58 -51.93 -0.39 1.98 16 16 C -0.55 -13.80 8.46 -34.44 -0.29 -14.09 16 17 H 0.08 1.91 7.74 -52.49 -0.41 1.50 16 18 C 0.07 1.68 5.20 -17.83 -0.09 1.58 16 19 N -0.84 -22.43 9.51 55.43 0.53 -21.90 16 20 Si 0.92 19.75 29.54 -169.99 -5.02 14.73 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 C 0.42 10.38 2.81 37.16 0.10 10.49 16 25 F -0.22 -5.28 15.68 2.25 0.04 -5.25 16 26 F -0.13 -3.61 12.92 2.25 0.03 -3.58 16 27 F -0.21 -5.03 16.94 2.25 0.04 -4.99 16 28 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.06 0.81 7.56 -51.93 -0.39 0.42 16 31 H 0.41 1.84 9.06 45.56 0.41 2.26 16 32 H 0.42 2.20 9.06 45.56 0.41 2.62 16 33 H 0.41 7.83 7.92 -40.82 -0.32 7.51 16 34 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 318.92 15.07 4.81 4.81 Total: -1.00 -32.15 318.92 -3.24 -35.39 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -0.67 Total: 6.83 kcal Atomic # 6 Polarization: 30.18 SS G_CDS: -1.17 Total: 29.01 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: -0.01 Total: -50.91 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -1.28 Total: -26.05 kcal Atomic # 9 Polarization: -13.92 SS G_CDS: 0.10 Total: -13.81 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.15 -3.24 -35.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362938072.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.987 kcal (2) G-P(sol) polarization free energy of solvation -32.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds