Wall clock time and date at job start Tue Mar 31 2020 20:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35780 * 117.00055 * 2 1 4 4 C 1.40339 * 120.90692 * 270.02187 * 3 2 1 5 5 O 1.35552 * 120.48845 * 359.97438 * 4 3 2 6 6 N 1.32411 * 119.02013 * 179.72753 * 4 3 2 7 7 C 1.32495 * 120.98467 * 0.51017 * 6 4 3 8 8 O 1.35534 * 118.99765 * 179.75418 * 7 6 4 9 9 N 1.31855 * 122.00495 * 359.47410 * 7 6 4 10 10 C 1.33533 * 120.87389 * 0.26058 * 9 7 6 11 11 C 1.48062 * 120.53693 * 179.97438 * 10 9 7 12 12 O 1.21525 * 120.00396 * 180.02562 * 11 10 9 13 13 N 1.34779 * 120.00179 * 359.97438 * 11 10 9 14 14 C 1.46495 * 120.00165 * 179.97438 * 13 11 10 15 15 H 1.08998 * 109.47235 * 35.00879 * 14 13 11 16 16 C 1.50710 * 109.47201 * 155.00240 * 14 13 11 17 17 H 1.07991 * 119.99475 * 0.02562 * 16 14 13 18 18 C 1.37871 * 119.99673 * 180.02562 * 16 14 13 19 19 N 1.31501 * 120.00610 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99537 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47323 * 90.00010 * 20 18 16 22 22 H 1.48502 * 109.47137 * 209.99956 * 20 18 16 23 23 H 1.48508 * 109.47140 * 330.00023 * 20 18 16 24 24 C 1.53000 * 109.47579 * 275.00337 * 14 13 11 25 25 F 1.39901 * 109.46769 * 60.00283 * 24 14 13 26 26 F 1.39899 * 109.47292 * 179.97438 * 24 14 13 27 27 F 1.39895 * 109.47153 * 300.00052 * 24 14 13 28 28 H 1.09004 * 109.47091 * 60.00238 * 1 2 3 29 29 H 1.08999 * 109.47600 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47329 * 299.99849 * 1 2 3 31 31 H 0.96705 * 113.99507 * 90.00143 * 5 4 3 32 32 H 0.96700 * 114.00259 * 269.72901 * 8 7 6 33 33 H 0.97000 * 119.99865 * 0.02562 * 13 11 10 34 34 H 0.97004 * 120.00412 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 2.3723 1.8523 -1.2041 5 8 2.0777 1.2740 -2.3942 6 7 2.9682 3.0339 -1.1605 7 6 3.2653 3.6057 -0.0028 8 8 3.8798 4.8137 -0.0052 9 7 2.9764 3.0378 1.1516 10 6 2.3709 1.8486 1.1977 11 6 2.0505 1.2174 2.4982 12 8 1.4997 0.1346 2.5288 13 7 2.3706 1.8434 3.6481 14 6 2.0530 1.2192 4.9348 15 1 2.1633 0.1380 4.8512 16 6 2.9933 1.7397 5.9913 17 1 3.7512 2.4633 5.7304 18 6 2.8858 1.2919 7.2908 19 7 1.9632 0.4103 7.6084 20 14 4.0508 1.9376 8.6005 21 1 3.4648 3.1475 9.2315 22 1 4.2613 0.8928 9.6346 23 1 5.3527 2.2861 7.9767 24 6 0.6122 1.5564 5.3236 25 9 -0.2607 1.0731 4.3428 26 9 0.3088 0.9598 6.5521 27 9 0.4707 2.9440 5.4309 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.2049 1.5071 -2.7393 32 1 4.8455 4.7638 -0.0059 33 1 2.8105 2.7075 3.6237 34 1 1.8878 0.0950 8.5227 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362938072.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:33 Heat of formation + Delta-G solvation = -246.665248 kcal Electronic energy + Delta-G solvation = -30593.271352 eV Core-core repulsion = 25499.453908 eV Total energy + Delta-G solvation = -5093.817444 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.076 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.45002 -48.08581 -47.75063 -42.88486 -40.67344 -39.92030 -38.70884 -37.82675 -36.59649 -34.89375 -34.29879 -31.56634 -30.49708 -28.07317 -26.84190 -26.47954 -24.92565 -23.68700 -22.18888 -20.89292 -20.24476 -19.58542 -19.26389 -19.01517 -18.82840 -18.67767 -18.37666 -17.46830 -17.37134 -16.86655 -16.67583 -16.13728 -16.04326 -15.76182 -15.29353 -15.03049 -14.99845 -14.55902 -14.48247 -14.31652 -14.21749 -14.05302 -13.90833 -13.90116 -13.38662 -13.09791 -12.91502 -12.79001 -12.66690 -12.41060 -12.24630 -12.01457 -11.78799 -11.60261 -11.48001 -10.70664 -10.46181 -10.30822 -10.14685 -8.22919 -6.53598 -1.04287 -0.69869 1.36675 1.41640 1.48110 1.49531 1.60023 1.88683 2.04472 2.22335 2.36676 2.37341 2.50169 2.92315 2.96838 3.37421 3.66520 3.73521 3.80583 3.97862 4.17313 4.26364 4.42530 4.55335 4.77602 4.83297 5.10306 5.24721 5.48676 5.62082 5.99349 6.29526 6.40687 6.42164 6.49553 6.56949 6.98737 7.19327 8.69843 Molecular weight = 337.08amu Principal moments of inertia in cm(-1) A = 0.016178 B = 0.004122 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.300482 B = 6791.032041 C = 7745.580161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.314 6.314 3 C 0.027 3.973 4 C 0.389 3.611 5 O -0.456 6.456 6 N -0.523 5.523 7 C 0.517 3.483 8 O -0.450 6.450 9 N -0.500 5.500 10 C 0.137 3.863 11 C 0.556 3.444 12 O -0.525 6.525 13 N -0.682 5.682 14 C 0.251 3.749 15 H 0.058 0.942 16 C -0.563 4.563 17 H 0.090 0.910 18 C 0.019 3.981 19 N -0.872 5.872 20 Si 0.982 3.018 21 H -0.274 1.274 22 H -0.281 1.281 23 H -0.258 1.258 24 C 0.415 3.585 25 F -0.217 7.217 26 F -0.147 7.147 27 F -0.203 7.203 28 H 0.079 0.921 29 H 0.116 0.884 30 H 0.030 0.970 31 H 0.434 0.566 32 H 0.438 0.562 33 H 0.418 0.582 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.433 4.771 -15.998 16.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.228 6.228 3 C -0.026 4.026 4 C 0.196 3.804 5 O -0.267 6.267 6 N -0.262 5.262 7 C 0.213 3.787 8 O -0.257 6.257 9 N -0.232 5.232 10 C -0.009 4.009 11 C 0.339 3.661 12 O -0.400 6.400 13 N -0.333 5.333 14 C 0.144 3.856 15 H 0.076 0.924 16 C -0.599 4.599 17 H 0.108 0.892 18 C -0.187 4.187 19 N -0.505 5.505 20 Si 0.806 3.194 21 H -0.200 1.200 22 H -0.206 1.206 23 H -0.182 1.182 24 C 0.359 3.641 25 F -0.199 7.199 26 F -0.129 7.129 27 F -0.185 7.185 28 H 0.097 0.903 29 H 0.134 0.866 30 H 0.049 0.951 31 H 0.299 0.701 32 H 0.303 0.697 33 H 0.256 0.744 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.420 4.548 -15.753 16.402 hybrid contribution -0.302 0.056 0.830 0.885 sum 0.118 4.604 -14.923 15.618 Atomic orbital electron populations 1.23217 0.75954 1.05464 1.00897 1.86065 1.22116 1.21023 1.93546 1.20538 1.00461 0.89963 0.91593 1.19421 0.90025 0.85087 0.85825 1.84760 1.42905 1.67498 1.31515 1.67480 1.16181 1.10665 1.31865 1.19771 0.91844 0.85560 0.81534 1.84736 1.27769 1.18442 1.94724 1.67965 1.14604 1.09209 1.31384 1.21747 0.95126 0.89907 0.94124 1.17960 0.79734 0.84982 0.83421 1.90830 1.41836 1.20539 1.86792 1.45831 1.59090 1.24040 1.04305 1.19496 0.87302 0.96507 0.82250 0.92409 1.21183 1.17639 1.28485 0.92640 0.89176 1.25939 0.96924 0.94910 1.00907 1.70497 1.30777 1.28657 1.20617 0.85170 0.78850 0.77855 0.77542 1.19969 1.20623 1.18201 1.23213 0.91872 0.73559 0.75445 1.93053 1.74286 1.88275 1.64283 1.93387 1.94076 1.82869 1.42519 1.92998 1.96801 1.32545 1.96169 0.90294 0.86609 0.95102 0.70092 0.69731 0.74421 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.86 10.55 113.37 1.20 2.05 16 2 O -0.31 -9.24 8.78 -64.59 -0.57 -9.81 16 3 C 0.03 0.77 5.81 23.11 0.13 0.90 16 4 C 0.39 8.98 7.86 85.12 0.67 9.65 16 5 O -0.46 -7.59 13.42 -76.71 -1.03 -8.62 16 6 N -0.52 -12.46 10.46 -425.95 -4.46 -16.91 16 7 C 0.52 12.78 8.69 180.65 1.57 14.35 16 8 O -0.45 -8.49 13.64 -88.38 -1.21 -9.69 16 9 N -0.50 -14.73 9.72 -302.83 -2.94 -17.67 16 10 C 0.14 4.49 6.79 41.82 0.28 4.77 16 11 C 0.56 22.45 7.35 86.85 0.64 23.09 16 12 O -0.53 -23.74 12.79 16.66 0.21 -23.53 16 13 N -0.68 -28.69 4.98 -448.77 -2.23 -30.93 16 14 C 0.25 12.45 2.21 44.25 0.10 12.55 16 15 H 0.06 3.23 7.58 -2.39 -0.02 3.21 16 16 C -0.56 -28.30 8.46 25.60 0.22 -28.08 16 17 H 0.09 4.24 7.74 -2.92 -0.02 4.22 16 18 C 0.02 0.96 5.20 84.66 0.44 1.40 16 19 N -0.87 -47.35 9.51 21.44 0.20 -47.14 16 20 Si 0.98 40.15 29.54 68.60 2.03 42.18 16 21 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 22 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 23 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 24 C 0.42 21.11 2.81 71.98 0.20 21.31 16 25 F -0.22 -10.72 15.68 44.97 0.71 -10.01 16 26 F -0.15 -8.12 12.92 44.97 0.58 -7.53 16 27 F -0.20 -9.94 16.94 44.97 0.76 -9.18 16 28 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.03 0.86 7.56 -2.39 -0.02 0.84 16 31 H 0.43 2.15 9.06 -74.05 -0.67 1.48 16 32 H 0.44 3.44 9.06 -74.06 -0.67 2.76 16 33 H 0.42 16.04 7.92 -92.71 -0.73 15.31 16 34 H 0.27 13.89 8.31 -92.70 -0.77 13.12 16 Total: -1.00 -69.53 318.92 -3.32 -72.85 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -0.82 Total: 13.99 kcal Atomic # 6 Polarization: 56.56 SS G_CDS: 5.45 Total: 62.01 kcal Atomic # 7 Polarization: -103.23 SS G_CDS: -9.43 Total: -112.66 kcal Atomic # 8 Polarization: -49.06 SS G_CDS: -2.59 Total: -51.64 kcal Atomic # 9 Polarization: -28.77 SS G_CDS: 2.05 Total: -26.72 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.18 kcal Total: -69.53 -3.32 -72.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362938072.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.816 kcal (2) G-P(sol) polarization free energy of solvation -69.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -243.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds