Wall clock time and date at job start Tue Mar 31 2020 20:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34716 * 117.00162 * 2 1 4 4 O 1.21479 * 119.99922 * 359.97438 * 3 2 1 5 5 C 1.47745 * 120.00271 * 180.02562 * 3 2 1 6 6 N 1.34631 * 126.03538 * 0.03718 * 5 3 2 7 7 C 1.30997 * 107.24290 * 179.72872 * 6 5 3 8 8 Cl 1.73593 * 126.20747 * 180.21822 * 7 6 5 9 9 N 1.34702 * 107.59123 * 0.37317 * 7 6 5 10 10 C 1.46494 * 125.74550 * 179.89035 * 9 7 6 11 11 C 1.50706 * 109.46848 * 269.71196 * 10 9 7 12 12 C 1.38303 * 119.93034 * 90.00157 * 11 10 9 13 13 C 1.38099 * 120.06408 * 179.97438 * 12 11 10 14 14 C 1.38882 * 119.93445 * 359.97438 * 13 12 11 15 15 O 1.35754 * 120.06635 * 179.97438 * 14 13 12 16 16 C 1.34829 * 117.00355 * 354.46667 * 15 14 13 17 17 H 1.07998 * 119.99409 * 5.05373 * 16 15 14 18 18 C 1.38651 * 120.00088 * 185.05761 * 16 15 14 19 19 N 1.31562 * 119.99726 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00090 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47067 * 59.99946 * 20 18 16 22 22 H 1.48501 * 109.47257 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47187 * 299.99789 * 20 18 16 24 24 C 1.38874 * 119.85939 * 0.27819 * 14 13 12 25 25 C 1.38105 * 119.93027 * 359.42081 * 24 14 13 26 26 N 1.28842 * 108.50666 * 359.62074 * 9 7 6 27 27 H 1.08998 * 109.47420 * 59.99696 * 1 2 3 28 28 H 1.08998 * 109.47270 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46934 * 299.99820 * 1 2 3 30 30 H 1.08999 * 109.47607 * 149.71358 * 10 9 7 31 31 H 1.09000 * 109.47548 * 29.70723 * 10 9 7 32 32 H 1.07996 * 119.96550 * 359.97095 * 12 11 10 33 33 H 1.08007 * 120.03128 * 179.97438 * 13 12 11 34 34 H 0.97003 * 119.99701 * 179.97438 * 19 18 16 35 35 H 1.08004 * 120.03515 * 179.72706 * 24 14 13 36 36 H 1.08002 * 119.95916 * 180.27993 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2191 -0.0005 5 6 3.5391 1.2777 -0.0006 6 7 4.3870 0.2319 -0.0018 7 6 5.6033 0.7183 -0.0079 8 17 7.0754 -0.2016 -0.0173 9 7 5.5046 2.0617 -0.0020 10 6 6.6277 3.0023 -0.0033 11 6 7.0148 3.3245 1.4171 12 6 7.9616 2.5532 2.0662 13 6 8.3187 2.8463 3.3676 14 6 7.7264 3.9171 4.0244 15 8 8.0751 4.2073 5.3039 16 6 8.9156 3.3509 5.9186 17 1 9.3439 2.5262 5.3683 18 6 9.2299 3.5287 7.2573 19 7 8.7084 4.5336 7.9275 20 14 10.3949 2.3426 8.1088 21 1 11.7127 2.3662 7.4247 22 1 10.5664 2.7493 9.5267 23 1 9.8321 0.9695 8.0519 24 6 6.7722 4.6864 3.3716 25 6 6.4239 4.3921 2.0680 26 7 4.2562 2.3800 -0.0006 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 6.3342 3.9180 -0.5165 31 1 7.4771 2.5534 -0.5184 32 1 8.4220 1.7208 1.5548 33 1 9.0579 2.2433 3.8742 34 1 8.9280 4.6578 8.8641 35 1 6.3066 5.5172 3.8811 36 1 5.6851 4.9929 1.5583 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363238607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:27 Heat of formation + Delta-G solvation = 12.396905 kcal Electronic energy + Delta-G solvation = -25349.035018 eV Core-core repulsion = 21249.017257 eV Total energy + Delta-G solvation = -4100.017761 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.066 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.72808 -40.40710 -39.29260 -37.44980 -37.12230 -36.67156 -34.76174 -32.54031 -31.91975 -30.43611 -30.30789 -28.33900 -26.53854 -25.36463 -24.38915 -22.67396 -22.17999 -21.18935 -20.81089 -18.63471 -18.19403 -17.45877 -17.42122 -17.07512 -16.64946 -16.32255 -15.79316 -14.97802 -14.77361 -14.56776 -14.03701 -13.88946 -13.73242 -13.49386 -13.33277 -12.99811 -12.73796 -12.54974 -12.39307 -12.21172 -11.77728 -11.72509 -11.51373 -11.39385 -11.05277 -11.04733 -11.01505 -10.85030 -10.76366 -10.57762 -10.45428 -9.63338 -9.54652 -9.01513 -8.42202 -7.50615 -6.62862 -4.21504 0.78847 0.94783 1.52174 1.62352 2.01931 2.07098 2.73151 2.87187 3.03487 3.05574 3.08050 3.82624 3.93463 4.21956 4.34967 4.81599 4.83158 4.86108 4.92857 4.95373 5.05817 5.15795 5.24857 5.43120 5.48146 5.60555 5.84511 5.96788 5.99384 5.99889 6.17542 6.44344 6.64894 6.81709 6.98831 7.08095 7.22647 7.31984 7.56403 7.71926 7.81094 8.81606 9.47273 10.53908 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.013545 B = 0.002777 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.647938 B =10081.884097 C =10526.580395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.335 6.335 3 C 0.575 3.425 4 O -0.480 6.480 5 C 0.152 3.848 6 N -0.443 5.443 7 C 0.248 3.752 8 Cl 0.065 6.935 9 N -0.261 5.261 10 C 0.168 3.832 11 C -0.239 4.239 12 C -0.042 4.042 13 C -0.237 4.237 14 C 0.167 3.833 15 O -0.166 6.166 16 C -0.395 4.395 17 H 0.095 0.905 18 C 0.042 3.958 19 N -0.855 5.855 20 Si 0.943 3.057 21 H -0.268 1.268 22 H -0.276 1.276 23 H -0.268 1.268 24 C -0.195 4.195 25 C -0.039 4.039 26 N -0.212 5.212 27 H 0.066 0.934 28 H 0.107 0.893 29 H 0.067 0.933 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.131 0.869 34 H 0.274 0.726 35 H 0.121 0.879 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.168 -8.223 -16.823 19.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.249 6.249 3 C 0.415 3.585 4 O -0.363 6.363 5 C -0.124 4.124 6 N -0.172 5.172 7 C -0.051 4.051 8 Cl 0.092 6.908 9 N -0.061 5.061 10 C 0.050 3.950 11 C -0.242 4.242 12 C -0.061 4.061 13 C -0.257 4.257 14 C 0.111 3.889 15 O -0.067 6.067 16 C -0.471 4.471 17 H 0.112 0.888 18 C -0.164 4.164 19 N -0.488 5.488 20 Si 0.767 3.233 21 H -0.193 1.193 22 H -0.201 1.201 23 H -0.193 1.193 24 C -0.215 4.215 25 C -0.058 4.058 26 N -0.056 5.056 27 H 0.085 0.915 28 H 0.125 0.875 29 H 0.086 0.914 30 H 0.133 0.867 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.149 0.851 34 H 0.084 0.916 35 H 0.139 0.861 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.736 -7.438 -16.403 19.229 hybrid contribution 0.958 -0.720 0.551 1.319 sum -5.778 -8.158 -15.853 18.741 Atomic orbital electron populations 1.23406 0.75106 1.04239 1.02940 1.86620 1.23742 1.30737 1.83779 1.18616 0.84515 0.82105 0.73297 1.90914 1.64955 1.35956 1.44511 1.21962 0.93425 0.85533 1.11436 1.71336 0.97009 1.29575 1.19310 1.24884 0.91373 0.82813 1.06039 1.98458 1.25410 1.70064 1.96841 1.48201 1.05517 1.05904 1.46460 1.21091 0.83892 0.92372 0.97600 1.18994 1.06794 1.03131 0.95256 1.20615 0.94891 0.96556 0.94024 1.21122 1.06546 1.02202 0.95793 1.19464 0.91400 0.91994 0.86013 1.83978 1.56558 1.46241 1.19930 1.21357 1.23263 1.08765 0.93708 0.88770 1.25361 0.98058 0.97589 0.95371 1.70028 1.40804 1.27852 1.10079 0.85739 0.79583 0.79488 0.78452 1.19297 1.20085 1.19273 1.20219 1.02000 1.03941 0.95307 1.20529 0.96587 0.95226 0.93438 1.74441 0.89703 1.24439 1.16997 0.91519 0.87452 0.91409 0.86724 0.87117 0.87303 0.85115 0.91608 0.86057 0.86502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.36 16 2 O -0.33 -4.18 10.58 -40.53 -0.43 -4.61 16 3 C 0.58 8.51 7.97 34.62 0.28 8.79 16 4 O -0.48 -7.79 16.88 -19.25 -0.32 -8.11 16 5 C 0.15 2.40 7.99 -156.33 -1.25 1.15 16 6 N -0.44 -6.84 11.43 -9.47 -0.11 -6.95 16 7 C 0.25 3.44 8.57 -90.27 -0.77 2.66 16 8 Cl 0.07 0.71 28.18 -51.86 -1.46 -0.75 16 9 N -0.26 -3.61 3.30 -60.49 -0.20 -3.81 16 10 C 0.17 1.93 6.31 -5.19 -0.03 1.89 16 11 C -0.24 -3.62 5.47 -104.57 -0.57 -4.19 16 12 C -0.04 -0.68 9.69 -39.61 -0.38 -1.06 16 13 C -0.24 -4.74 9.17 -39.39 -0.36 -5.10 16 14 C 0.17 3.80 6.65 -39.11 -0.26 3.54 16 15 O -0.17 -4.51 9.76 0.04 0.00 -4.51 16 16 C -0.40 -10.51 9.49 30.88 0.29 -10.22 16 17 H 0.09 2.29 5.20 -52.49 -0.27 2.01 16 18 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 19 N -0.85 -24.15 13.67 55.48 0.76 -23.39 16 20 Si 0.94 19.60 29.55 -169.99 -5.02 14.58 16 21 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 22 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 24 C -0.20 -3.90 9.99 -39.40 -0.39 -4.29 16 25 C -0.04 -0.65 9.69 -39.61 -0.38 -1.03 16 26 N -0.21 -3.33 12.08 32.06 0.39 -2.94 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.11 1.10 8.08 -51.93 -0.42 0.68 16 31 H 0.11 0.96 7.71 -51.93 -0.40 0.56 16 32 H 0.11 1.45 7.49 -52.49 -0.39 1.06 16 33 H 0.13 2.61 5.64 -52.48 -0.30 2.31 16 34 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.12 2.36 8.06 -52.48 -0.42 1.94 16 36 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 346.77 15.07 5.23 5.23 Total: -1.00 -31.99 346.77 -7.07 -39.06 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -3.03 Total: 1.68 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -2.87 Total: -5.48 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.84 Total: -37.09 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.75 Total: -17.23 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Atomic # 17 Polarization: 0.71 SS G_CDS: -1.46 Total: -0.75 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.99 -7.07 -39.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363238607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.461 kcal (2) G-P(sol) polarization free energy of solvation -31.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds