Wall clock time and date at job start Tue Mar 31 2020 20:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34716 * 117.00162 * 2 1 4 4 O 1.21479 * 119.99922 * 359.97438 * 3 2 1 5 5 C 1.47745 * 120.00271 * 180.02562 * 3 2 1 6 6 N 1.34631 * 126.03538 * 0.03718 * 5 3 2 7 7 C 1.30997 * 107.24290 * 179.72872 * 6 5 3 8 8 Cl 1.73593 * 126.20747 * 180.21822 * 7 6 5 9 9 N 1.34702 * 107.59123 * 0.37317 * 7 6 5 10 10 C 1.46494 * 125.74550 * 179.89035 * 9 7 6 11 11 C 1.50706 * 109.46848 * 269.71196 * 10 9 7 12 12 C 1.38303 * 119.93034 * 90.00157 * 11 10 9 13 13 C 1.38099 * 120.06408 * 179.97438 * 12 11 10 14 14 C 1.38882 * 119.93445 * 359.97438 * 13 12 11 15 15 O 1.35754 * 120.06635 * 179.97438 * 14 13 12 16 16 C 1.34829 * 117.00355 * 354.46667 * 15 14 13 17 17 H 1.07998 * 119.99409 * 5.05373 * 16 15 14 18 18 C 1.38651 * 120.00088 * 185.05761 * 16 15 14 19 19 N 1.31562 * 119.99726 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00090 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47067 * 59.99946 * 20 18 16 22 22 H 1.48501 * 109.47257 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47187 * 299.99789 * 20 18 16 24 24 C 1.38874 * 119.85939 * 0.27819 * 14 13 12 25 25 C 1.38105 * 119.93027 * 359.42081 * 24 14 13 26 26 N 1.28842 * 108.50666 * 359.62074 * 9 7 6 27 27 H 1.08998 * 109.47420 * 59.99696 * 1 2 3 28 28 H 1.08998 * 109.47270 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46934 * 299.99820 * 1 2 3 30 30 H 1.08999 * 109.47607 * 149.71358 * 10 9 7 31 31 H 1.09000 * 109.47548 * 29.70723 * 10 9 7 32 32 H 1.07996 * 119.96550 * 359.97095 * 12 11 10 33 33 H 1.08007 * 120.03128 * 179.97438 * 13 12 11 34 34 H 0.97003 * 119.99701 * 179.97438 * 19 18 16 35 35 H 1.08004 * 120.03515 * 179.72706 * 24 14 13 36 36 H 1.08002 * 119.95916 * 180.27993 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2191 -0.0005 5 6 3.5391 1.2777 -0.0006 6 7 4.3870 0.2319 -0.0018 7 6 5.6033 0.7183 -0.0079 8 17 7.0754 -0.2016 -0.0173 9 7 5.5046 2.0617 -0.0020 10 6 6.6277 3.0023 -0.0033 11 6 7.0148 3.3245 1.4171 12 6 7.9616 2.5532 2.0662 13 6 8.3187 2.8463 3.3676 14 6 7.7264 3.9171 4.0244 15 8 8.0751 4.2073 5.3039 16 6 8.9156 3.3509 5.9186 17 1 9.3439 2.5262 5.3683 18 6 9.2299 3.5287 7.2573 19 7 8.7084 4.5336 7.9275 20 14 10.3949 2.3426 8.1088 21 1 11.7127 2.3662 7.4247 22 1 10.5664 2.7493 9.5267 23 1 9.8321 0.9695 8.0519 24 6 6.7722 4.6864 3.3716 25 6 6.4239 4.3921 2.0680 26 7 4.2562 2.3800 -0.0006 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 6.3342 3.9180 -0.5165 31 1 7.4771 2.5534 -0.5184 32 1 8.4220 1.7208 1.5548 33 1 9.0579 2.2433 3.8742 34 1 8.9280 4.6578 8.8641 35 1 6.3066 5.5172 3.8811 36 1 5.6851 4.9929 1.5583 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363238607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:27 Heat of formation + Delta-G solvation = -6.939324 kcal Electronic energy + Delta-G solvation = -25349.873500 eV Core-core repulsion = 21249.017257 eV Total energy + Delta-G solvation = -4100.856243 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.066 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.83930 -41.45123 -40.89922 -38.71256 -38.38604 -37.70911 -35.99048 -34.35675 -33.12095 -31.92268 -31.62269 -29.26614 -27.89968 -26.98094 -25.49986 -23.89551 -23.63283 -22.41042 -22.10820 -19.98012 -19.66921 -18.95541 -18.47881 -18.35368 -17.74920 -17.36717 -16.85631 -16.53041 -16.34709 -15.99817 -15.61462 -15.22373 -14.92950 -14.66183 -14.46856 -14.40887 -14.07827 -13.65285 -13.57644 -13.15027 -13.14817 -13.10050 -12.83005 -12.67868 -12.50748 -12.38059 -12.17580 -12.14489 -11.92724 -11.91626 -11.62187 -11.26264 -10.85021 -10.72837 -9.90088 -9.14843 -8.52243 -6.21112 -0.27399 -0.17471 0.30836 0.48816 0.50619 0.92378 1.34567 1.44114 1.50733 1.67648 1.73986 2.14611 2.74999 2.87068 3.09854 3.27060 3.40386 3.65352 3.82013 4.05055 4.15681 4.24280 4.30324 4.33822 4.34406 4.48139 4.63413 4.70747 4.79728 4.91066 4.94742 5.01563 5.07704 5.16000 5.42884 5.56427 5.61128 5.96142 6.05718 6.25951 6.61273 6.92029 7.69030 8.70108 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.013545 B = 0.002777 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.647938 B =10081.884097 C =10526.580395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.339 6.339 3 C 0.576 3.424 4 O -0.503 6.503 5 C 0.140 3.860 6 N -0.459 5.459 7 C 0.248 3.752 8 Cl 0.093 6.907 9 N -0.261 5.261 10 C 0.163 3.837 11 C -0.209 4.209 12 C -0.035 4.035 13 C -0.245 4.245 14 C 0.131 3.869 15 O -0.225 6.225 16 C -0.416 4.416 17 H 0.107 0.893 18 C -0.020 4.020 19 N -0.918 5.918 20 Si 1.018 2.982 21 H -0.253 1.253 22 H -0.273 1.273 23 H -0.257 1.257 24 C -0.211 4.211 25 C -0.034 4.034 26 N -0.227 5.227 27 H 0.074 0.926 28 H 0.141 0.859 29 H 0.067 0.933 30 H 0.144 0.856 31 H 0.150 0.850 32 H 0.147 0.853 33 H 0.126 0.874 34 H 0.274 0.726 35 H 0.113 0.887 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.912 -10.390 -19.967 23.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.253 6.253 3 C 0.416 3.584 4 O -0.388 6.388 5 C -0.136 4.136 6 N -0.188 5.188 7 C -0.051 4.051 8 Cl 0.120 6.880 9 N -0.060 5.060 10 C 0.047 3.953 11 C -0.211 4.211 12 C -0.053 4.053 13 C -0.265 4.265 14 C 0.079 3.921 15 O -0.131 6.131 16 C -0.492 4.492 17 H 0.124 0.876 18 C -0.219 4.219 19 N -0.555 5.555 20 Si 0.837 3.163 21 H -0.177 1.177 22 H -0.198 1.198 23 H -0.181 1.181 24 C -0.230 4.230 25 C -0.053 4.053 26 N -0.071 5.071 27 H 0.093 0.907 28 H 0.159 0.841 29 H 0.086 0.914 30 H 0.162 0.838 31 H 0.168 0.832 32 H 0.164 0.836 33 H 0.144 0.856 34 H 0.083 0.917 35 H 0.131 0.869 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.497 -9.632 -19.622 22.804 hybrid contribution 0.683 -0.129 1.076 1.281 sum -5.814 -9.761 -18.546 21.749 Atomic orbital electron populations 1.23804 0.72697 1.06611 1.03368 1.86615 1.26096 1.29532 1.83090 1.18657 0.84398 0.82455 0.72848 1.90894 1.65352 1.36734 1.45813 1.22211 0.94035 0.85719 1.11640 1.71319 0.97705 1.29841 1.19932 1.25169 0.92019 0.83052 1.04887 1.98475 1.23443 1.69418 1.96637 1.48143 1.05306 1.06164 1.46413 1.21437 0.84685 0.94083 0.95122 1.19456 1.04061 1.00804 0.96800 1.20985 0.94565 0.97272 0.92498 1.21265 1.06434 1.01401 0.97357 1.20019 0.92870 0.93832 0.85361 1.83955 1.58904 1.48035 1.22167 1.21844 1.23601 1.09308 0.94433 0.87561 1.26626 0.99895 0.99448 0.95894 1.70178 1.44044 1.30830 1.10452 0.84657 0.77525 0.77073 0.77081 1.17742 1.19803 1.18146 1.20446 1.01898 1.03840 0.96861 1.20905 0.96549 0.95787 0.92028 1.74404 0.90450 1.24768 1.17454 0.90743 0.84128 0.91390 0.83825 0.83192 0.83569 0.85613 0.91690 0.86865 0.83591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.59 16 2 O -0.34 -7.97 10.58 -56.25 -0.59 -8.56 16 3 C 0.58 16.38 7.97 70.34 0.56 16.94 16 4 O -0.50 -15.88 16.88 19.91 0.34 -15.55 16 5 C 0.14 4.15 7.99 137.06 1.09 5.25 16 6 N -0.46 -13.05 11.43 -183.86 -2.10 -15.15 16 7 C 0.25 6.00 8.57 180.23 1.54 7.55 16 8 Cl 0.09 1.66 28.18 -2.72 -0.08 1.58 16 9 N -0.26 -6.20 3.30 -345.28 -1.14 -7.35 16 10 C 0.16 2.90 6.31 85.64 0.54 3.44 16 11 C -0.21 -5.52 5.47 -19.83 -0.11 -5.63 16 12 C -0.03 -1.01 9.69 22.25 0.22 -0.80 16 13 C -0.25 -9.69 9.17 22.39 0.21 -9.49 16 14 C 0.13 6.17 6.65 22.58 0.15 6.32 16 15 O -0.23 -13.08 9.76 -22.78 -0.22 -13.30 16 16 C -0.42 -23.29 9.49 67.92 0.64 -22.64 16 17 H 0.11 5.35 5.20 -2.91 -0.02 5.33 16 18 C -0.02 -1.12 5.49 84.83 0.47 -0.66 16 19 N -0.92 -55.22 13.67 21.61 0.30 -54.92 16 20 Si 1.02 41.30 29.55 68.60 2.03 43.33 16 21 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 22 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 23 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 24 C -0.21 -8.56 9.99 22.39 0.22 -8.34 16 25 C -0.03 -1.06 9.69 22.25 0.22 -0.84 16 26 N -0.23 -6.51 12.08 -52.48 -0.63 -7.14 16 27 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.14 1.90 8.08 -2.39 -0.02 1.88 16 31 H 0.15 1.61 7.71 -2.39 -0.02 1.59 16 32 H 0.15 3.17 7.49 -2.91 -0.02 3.15 16 33 H 0.13 5.03 5.64 -2.91 -0.02 5.01 16 34 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 35 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 36 H 0.15 3.70 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -75.84 346.77 5.99 -69.85 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 1.15 Total: 14.52 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 6.95 Total: -7.31 kcal Atomic # 7 Polarization: -80.98 SS G_CDS: -3.58 Total: -84.56 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -0.48 Total: -37.41 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Atomic # 17 Polarization: 1.66 SS G_CDS: -0.08 Total: 1.58 kcal Total: -75.84 5.99 -69.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363238607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.913 kcal (2) G-P(sol) polarization free energy of solvation -75.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds