Wall clock time and date at job start Tue Mar 31 2020 20:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86796 * 120.00261 * 2 1 4 4 H 1.48503 * 109.47086 * 270.00554 * 3 2 1 5 5 H 1.48502 * 109.46816 * 30.00252 * 3 2 1 6 6 H 1.48497 * 109.46961 * 150.00129 * 3 2 1 7 7 C 1.38733 * 119.99537 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99356 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00373 * 359.97438 * 7 2 1 10 10 C 1.76203 * 99.99975 * 174.99607 * 9 7 2 11 11 C 1.39225 * 120.02127 * 274.99546 * 10 9 7 12 12 C 1.38134 * 120.20245 * 179.97438 * 11 10 9 13 13 C 1.38090 * 120.24328 * 359.78548 * 12 11 10 14 14 C 1.39637 * 120.03526 * 0.46450 * 13 12 11 15 15 C 1.47859 * 120.09811 * 179.78820 * 14 13 12 16 16 O 1.21554 * 120.00282 * 36.37332 * 15 14 13 17 17 N 1.34784 * 119.99983 * 216.36907 * 15 14 13 18 18 C 1.47547 * 125.71994 * 354.52533 * 17 15 14 19 19 C 1.56186 * 105.82660 * 176.46740 * 18 17 15 20 20 H 1.09006 * 116.99343 * 159.87575 * 19 18 17 21 21 C 1.57657 * 98.57894 * 33.00423 * 19 18 17 22 22 C 1.48623 * 125.71551 * 174.49840 * 17 15 14 23 23 H 1.09000 * 114.68744 * 28.62336 * 22 17 15 24 24 C 1.55797 * 106.49057 * 261.90050 * 22 17 15 25 25 S 1.85019 * 104.77520 * 291.21509 * 19 18 17 26 26 O 1.42098 * 109.46793 * 181.40702 * 25 19 18 27 27 C 1.38832 * 120.02026 * 94.97070 * 10 9 7 28 28 H 0.96993 * 119.99771 * 359.97438 * 1 2 3 29 29 H 1.08002 * 119.89423 * 359.97306 * 11 10 9 30 30 H 1.07994 * 119.87719 * 180.02562 * 12 11 10 31 31 H 1.07990 * 119.98209 * 180.23293 * 13 12 11 32 32 H 1.08999 * 110.17805 * 57.37833 * 18 17 15 33 33 H 1.09004 * 110.17646 * 295.55753 * 18 17 15 34 34 H 1.08993 * 111.57711 * 68.76434 * 21 19 18 35 35 H 1.09009 * 111.57024 * 194.08801 * 21 19 18 36 36 H 1.08997 * 110.75466 * 48.36067 * 24 22 17 37 37 H 1.08996 * 110.76172 * 171.54665 * 24 22 17 38 38 H 1.08006 * 120.11770 * 0.04747 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0099 -1.2015 -0.0005 8 1 3.0899 -1.2015 -0.0001 9 16 1.1288 -2.7274 -0.0005 10 6 2.4728 -3.8567 -0.1527 11 6 2.9804 -4.1700 -1.4107 12 6 4.0343 -5.0545 -1.5342 13 6 4.5944 -5.6303 -0.4110 14 6 4.0898 -5.3272 0.8552 15 6 4.6854 -5.9466 2.0585 16 8 5.8837 -6.1439 2.1107 17 7 3.8997 -6.2924 3.0976 18 6 2.4566 -6.0096 3.2178 19 6 1.9986 -6.6891 4.5474 20 1 1.0712 -6.3293 4.9931 21 6 3.3254 -6.4993 5.3776 22 6 4.3416 -7.0229 4.3141 23 1 5.3858 -6.8664 4.5849 24 6 3.9693 -8.5192 4.0911 25 16 2.1204 -8.5052 4.2154 26 8 1.6911 -9.2261 5.3623 27 6 3.0267 -4.4342 0.9819 28 1 -0.4849 0.8400 0.0004 29 1 2.5487 -3.7202 -2.2926 30 1 4.4241 -5.2935 -2.5126 31 1 5.4206 -6.3183 -0.5123 32 1 1.9180 -6.4371 2.3721 33 1 2.2871 -4.9339 3.2674 34 1 3.5013 -5.4508 5.6179 35 1 3.3290 -7.1189 6.2745 36 1 4.2994 -8.8571 3.1088 37 1 4.3947 -9.1443 4.8761 38 1 2.6347 -4.1932 1.9590 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413222666.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:45 Heat of formation + Delta-G solvation = -38.296557 kcal Electronic energy + Delta-G solvation = -24078.179626 eV Core-core repulsion = 20524.300552 eV Total energy + Delta-G solvation = -3553.879074 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 337.059 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.67233 -39.66194 -38.57541 -36.93897 -34.59539 -33.66665 -31.85985 -31.67953 -31.25543 -27.67426 -27.31744 -25.47677 -23.77418 -23.18309 -22.23994 -20.76469 -19.74532 -18.85859 -18.29959 -17.73066 -17.52898 -16.87780 -16.80418 -16.48811 -16.12055 -15.74877 -15.53251 -15.00004 -14.82043 -14.66949 -14.55768 -14.29735 -14.03985 -13.78426 -13.45682 -13.24112 -13.13849 -13.04469 -13.00459 -12.94733 -12.56790 -12.47335 -12.39234 -12.10223 -11.68356 -11.23055 -11.14015 -10.90805 -10.62153 -10.00138 -9.82405 -9.60523 -9.33980 -8.70588 -8.34562 -6.11607 -0.04362 0.32730 0.55060 1.22571 1.35097 1.39054 1.48502 1.64014 1.70627 1.75420 2.28444 2.64291 2.78524 2.98892 3.06296 3.23442 3.47633 3.53746 3.60303 3.71402 3.94193 4.16098 4.21938 4.40210 4.41761 4.44627 4.48816 4.57973 4.67668 4.70820 4.73151 4.81844 4.90909 4.99723 5.10109 5.31921 5.43673 5.45704 5.56841 5.91527 6.21295 6.25509 6.94865 7.07735 8.71423 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.014662 B = 0.003387 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.214855 B = 8265.692356 C = 8973.052329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.027 3.973 3 Si 0.981 3.019 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.539 4.539 8 H 0.064 0.936 9 S -0.072 6.072 10 C -0.125 4.125 11 C -0.066 4.066 12 C -0.123 4.123 13 C -0.058 4.058 14 C -0.148 4.148 15 C 0.590 3.410 16 O -0.569 6.569 17 N -0.613 5.613 18 C 0.111 3.889 19 C -0.383 4.383 20 H 0.167 0.833 21 C -0.145 4.145 22 C 0.141 3.859 23 H 0.114 0.886 24 C -0.422 4.422 25 S 1.257 4.743 26 O -0.902 6.902 27 C -0.057 4.057 28 H 0.273 0.727 29 H 0.127 0.873 30 H 0.162 0.838 31 H 0.147 0.853 32 H 0.117 0.883 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.141 0.859 37 H 0.106 0.894 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.312 -15.752 3.138 16.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.178 4.178 3 Si 0.804 3.196 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.686 4.686 8 H 0.082 0.918 9 S 0.162 5.838 10 C -0.237 4.237 11 C -0.087 4.087 12 C -0.142 4.142 13 C -0.076 4.076 14 C -0.153 4.153 15 C 0.380 3.620 16 O -0.449 6.449 17 N -0.347 5.347 18 C -0.012 4.012 19 C -0.501 4.501 20 H 0.184 0.816 21 C -0.184 4.184 22 C 0.038 3.962 23 H 0.132 0.868 24 C -0.561 4.561 25 S 1.457 4.543 26 O -0.898 6.898 27 C -0.078 4.078 28 H 0.082 0.918 29 H 0.145 0.855 30 H 0.179 0.821 31 H 0.164 0.836 32 H 0.135 0.865 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.106 0.894 36 H 0.159 0.841 37 H 0.124 0.876 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.858 -16.710 3.128 17.432 hybrid contribution 2.715 2.193 1.846 3.948 sum 6.573 -14.517 4.973 16.694 Atomic orbital electron populations 1.70075 1.07220 1.28630 1.47948 1.25810 0.95872 1.02304 0.93862 0.85202 0.78219 0.77371 0.78821 1.19331 1.19898 1.19465 1.23091 0.94652 0.92148 1.58692 0.91752 1.83404 1.07381 0.97446 1.95520 1.22515 1.03034 1.02238 0.95864 1.22039 0.94948 0.94940 0.96777 1.21403 0.96007 0.96895 0.99935 1.21422 0.97805 0.97942 0.90479 1.19818 0.99192 1.02446 0.93864 1.18025 0.85097 0.76750 0.82104 1.90754 1.15465 1.56764 1.81877 1.48958 1.10515 1.56967 1.18269 1.22657 0.79400 1.01921 0.97182 1.29747 1.02852 1.17697 0.99793 0.81572 1.24069 0.92350 1.04593 0.97392 1.22995 1.00546 0.89220 0.83487 0.86774 1.28930 1.18616 0.99201 1.09342 1.71213 0.88945 0.84283 1.09867 1.93011 1.75118 1.64908 1.56742 1.22131 0.92802 0.93948 0.98957 0.91792 0.85479 0.82080 0.83574 0.86512 0.89346 0.88595 0.89398 0.84091 0.87583 0.84067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.71 13.22 21.64 0.29 -50.43 16 2 C 0.03 1.46 5.49 84.84 0.47 1.93 16 3 Si 0.98 42.17 29.55 68.60 2.03 44.20 16 4 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 5 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 7 C -0.54 -29.03 9.46 67.94 0.64 -28.38 16 8 H 0.06 3.49 7.79 -2.91 -0.02 3.46 16 9 S -0.07 -3.44 21.41 -56.49 -1.21 -4.64 16 10 C -0.13 -4.70 5.45 22.65 0.12 -4.58 16 11 C -0.07 -2.15 9.79 22.48 0.22 -1.93 16 12 C -0.12 -3.07 10.02 22.21 0.22 -2.85 16 13 C -0.06 -1.46 9.61 22.57 0.22 -1.24 16 14 C -0.15 -4.18 5.62 -20.11 -0.11 -4.30 16 15 C 0.59 16.14 7.54 86.79 0.65 16.79 16 16 O -0.57 -18.93 17.13 -3.89 -0.07 -18.99 16 17 N -0.61 -12.87 2.88 -775.97 -2.23 -15.10 16 18 C 0.11 1.88 4.52 87.29 0.39 2.28 16 19 C -0.38 -5.58 5.70 33.35 0.19 -5.39 16 20 H 0.17 2.05 8.14 -2.38 -0.02 2.03 16 21 C -0.15 -2.43 6.25 33.33 0.21 -2.22 16 22 C 0.14 2.58 4.46 46.64 0.21 2.79 16 23 H 0.11 2.30 8.04 -2.39 -0.02 2.28 16 24 C -0.42 -6.19 7.04 72.95 0.51 -5.68 16 25 S 1.26 18.29 13.99 -56.49 -0.79 17.49 16 26 O -0.90 -24.41 18.17 -148.98 -2.71 -27.12 16 27 C -0.06 -1.83 8.18 22.70 0.19 -1.65 16 28 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 29 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 30 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 31 H 0.15 3.14 8.02 -2.92 -0.02 3.11 16 32 H 0.12 1.51 7.83 -2.39 -0.02 1.49 16 33 H 0.09 1.73 5.88 -2.38 -0.01 1.71 16 34 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.09 1.49 8.11 -2.38 -0.02 1.47 16 36 H 0.14 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.14 4.29 4.89 -2.91 -0.01 4.27 16 Total: -1.00 -76.07 344.37 0.53 -75.54 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 1.09 Total: 13.47 kcal Atomic # 6 Polarization: -38.56 SS G_CDS: 4.13 Total: -34.42 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: -1.95 Total: -65.53 kcal Atomic # 8 Polarization: -43.34 SS G_CDS: -2.77 Total: -46.11 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Atomic # 16 Polarization: 14.85 SS G_CDS: -2.00 Total: 12.85 kcal Total: -76.07 0.53 -75.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413222666.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.243 kcal (2) G-P(sol) polarization free energy of solvation -76.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds