Wall clock time and date at job start Tue Mar 31 2020 19:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86803 * 119.99838 * 2 1 4 4 H 1.48500 * 109.47255 * 274.98817 * 3 2 1 5 5 H 1.48498 * 109.47027 * 34.98763 * 3 2 1 6 6 H 1.48502 * 109.47268 * 154.98796 * 3 2 1 7 7 C 1.40045 * 120.00526 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00412 * 186.15045 * 7 2 1 9 9 C 1.46376 * 119.99754 * 6.14261 * 7 2 1 10 10 O 1.21680 * 120.00097 * 353.94712 * 9 7 2 11 11 N 1.34776 * 119.99835 * 174.21876 * 9 7 2 12 12 C 1.46497 * 119.99869 * 179.72770 * 11 9 7 13 13 C 1.50705 * 109.47399 * 180.02562 * 12 11 9 14 14 C 1.38263 * 119.99790 * 269.72913 * 13 12 11 15 15 C 1.38209 * 119.99652 * 179.78488 * 14 13 12 16 16 C 1.38252 * 120.00538 * 0.43952 * 15 14 13 17 17 C 1.38223 * 119.99693 * 359.81127 * 16 15 14 18 18 S 1.76198 * 120.00246 * 179.97438 * 17 16 15 19 19 O 1.42102 * 104.27390 * 26.05009 * 18 17 16 20 20 O 1.42101 * 104.27763 * 153.90528 * 18 17 16 21 21 C 1.81397 * 104.44970 * 269.98090 * 18 17 16 22 22 F 1.39907 * 109.47172 * 59.99726 * 21 18 17 23 23 F 1.39897 * 109.47272 * 179.97438 * 21 18 17 24 24 F 1.39900 * 109.47146 * 299.99805 * 21 18 17 25 25 C 1.38209 * 119.99903 * 89.99595 * 13 12 11 26 26 H 0.96998 * 119.99932 * 359.97438 * 1 2 3 27 27 H 0.96998 * 120.00266 * 359.72331 * 11 9 7 28 28 H 1.09005 * 109.47213 * 299.99960 * 12 11 9 29 29 H 1.09001 * 109.47022 * 60.00221 * 12 11 9 30 30 H 1.08005 * 120.00020 * 359.97438 * 14 13 12 31 31 H 1.08011 * 120.00109 * 180.27390 * 15 14 13 32 32 H 1.07990 * 120.00387 * 179.83490 * 16 15 14 33 33 H 1.07993 * 120.00506 * 359.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3828 2.1074 -1.3948 5 1 1.4948 2.6199 0.8028 6 1 3.5870 1.4122 0.5920 7 6 2.0070 -1.2128 -0.0005 8 1 3.0824 -1.2155 0.0997 9 6 1.2815 -2.4767 -0.1368 10 8 0.0647 -2.4827 -0.1387 11 7 1.9613 -3.6346 -0.2545 12 6 1.2351 -4.9002 -0.3848 13 6 2.2201 -6.0351 -0.4992 14 6 2.6694 -6.4377 -1.7433 15 6 3.5761 -7.4755 -1.8479 16 6 4.0270 -8.1171 -0.7093 17 6 3.5738 -7.7181 0.5341 18 16 4.1478 -8.5361 1.9853 19 8 5.4207 -9.0497 1.6177 20 8 4.0196 -7.5611 3.0111 21 6 2.9654 -9.8879 2.2404 22 9 2.9758 -10.7332 1.1256 23 9 3.3270 -10.6149 3.3797 24 9 1.6819 -9.3586 2.4124 25 6 2.6701 -6.6770 0.6391 26 1 -0.4850 0.8400 0.0004 27 1 2.9312 -3.6299 -0.2530 28 1 0.6078 -5.0513 0.4937 29 1 0.6098 -4.8701 -1.2771 30 1 2.3142 -5.9391 -2.6331 31 1 3.9306 -7.7872 -2.8194 32 1 4.7334 -8.9298 -0.7912 33 1 2.3162 -6.3651 1.6105 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001420750843.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:47 Heat of formation + Delta-G solvation = -207.858628 kcal Electronic energy + Delta-G solvation = -26449.735029 eV Core-core repulsion = 21768.060486 eV Total energy + Delta-G solvation = -4681.674543 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.043 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.73172 -48.41936 -48.36676 -39.76470 -38.10972 -37.26533 -36.96422 -33.99327 -32.46862 -31.68263 -30.94670 -27.56910 -27.02025 -25.08171 -23.71575 -22.02546 -20.80636 -19.80448 -19.34722 -19.27595 -19.14866 -18.04174 -17.13248 -16.55624 -16.35385 -15.46601 -15.40105 -15.37332 -15.20362 -15.13439 -14.79112 -14.72916 -14.43765 -14.42520 -14.35143 -14.07423 -13.30265 -13.24692 -13.14127 -13.00210 -12.82695 -12.74108 -12.28647 -11.79840 -11.60956 -11.36770 -11.19333 -11.07883 -10.91861 -10.50844 -10.26115 -9.75644 -9.25092 -8.89495 -7.68341 -7.64699 -6.24809 -4.69300 -1.49456 0.41229 0.98099 1.66178 2.34533 2.69072 2.72452 3.11572 3.16371 3.19076 3.22207 3.25834 3.57476 4.08215 4.40862 4.50826 4.54855 4.75660 4.91255 5.02155 5.05425 5.26058 5.56807 5.61101 5.69918 5.92411 5.97916 6.21471 6.43630 6.52434 7.39400 7.82603 7.96602 8.26438 8.97625 9.42677 10.52727 10.70616 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.020334 B = 0.002760 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.702649 B =10144.235869 C =10332.871855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.909 3.091 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.069 0.931 9 C 0.555 3.445 10 O -0.579 6.579 11 N -0.764 5.764 12 C 0.166 3.834 13 C -0.103 4.103 14 C -0.032 4.032 15 C -0.138 4.138 16 C -0.015 4.015 17 C -0.659 4.659 18 S 2.489 3.511 19 O -0.862 6.862 20 O -0.854 6.854 21 C -0.021 4.021 22 F -0.158 7.158 23 F -0.162 7.162 24 F -0.154 7.154 25 C 0.004 3.996 26 H 0.269 0.731 27 H 0.382 0.618 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.145 0.855 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.112 -20.009 -0.426 21.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.087 0.913 9 C 0.359 3.641 10 O -0.462 6.462 11 N -0.421 5.421 12 C 0.042 3.958 13 C -0.105 4.105 14 C -0.050 4.050 15 C -0.157 4.157 16 C -0.035 4.035 17 C -0.752 4.752 18 S 2.653 3.347 19 O -0.860 6.860 20 O -0.851 6.851 21 C -0.146 4.146 22 F -0.140 7.140 23 F -0.144 7.144 24 F -0.136 7.136 25 C -0.016 4.016 26 H 0.080 0.920 27 H 0.214 0.786 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.157 0.843 31 H 0.157 0.843 32 H 0.163 0.837 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 8.589 -19.893 0.173 21.668 hybrid contribution -0.053 0.198 -0.445 0.490 sum 8.535 -19.694 -0.272 21.466 Atomic orbital electron populations 1.70019 1.07099 1.27384 1.35034 1.25707 0.94613 1.00345 0.92558 0.86344 0.80275 0.81386 0.78673 1.19810 1.20418 1.18829 1.20872 0.94175 0.89417 1.53696 0.91286 1.18264 0.87155 0.82227 0.76454 1.90606 1.14054 1.86219 1.55338 1.46255 1.08708 1.04848 1.82290 1.19873 0.91847 0.82008 1.02094 1.20415 0.99176 0.98171 0.92705 1.21671 0.92235 0.93141 0.97985 1.21302 0.98534 0.97129 0.98765 1.20941 0.94795 0.97232 0.90535 1.29558 1.16831 1.13737 1.15060 1.07189 0.75419 0.75138 0.76980 1.93667 1.29950 1.79301 1.83046 1.93709 1.83940 1.50735 1.56751 1.35211 0.97735 1.02945 0.78748 1.93268 1.96631 1.73678 1.50417 1.93264 1.90991 1.80053 1.50079 1.93302 1.40279 1.85004 1.94977 1.21004 0.89981 0.90238 1.00389 0.92038 0.78637 0.91811 0.91806 0.84276 0.84334 0.83718 0.83262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.57 11.85 55.55 0.66 -21.91 16 2 C 0.09 2.40 5.49 -17.37 -0.10 2.31 16 3 Si 0.91 19.77 29.56 -169.99 -5.03 14.74 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.54 -15.01 9.53 -35.63 -0.34 -15.35 16 8 H 0.07 1.75 7.85 -52.49 -0.41 1.33 16 9 C 0.55 15.23 7.74 -12.99 -0.10 15.13 16 10 O -0.58 -18.20 15.04 5.21 0.08 -18.12 16 11 N -0.76 -16.08 5.54 -62.90 -0.35 -16.43 16 12 C 0.17 2.89 5.80 -5.19 -0.03 2.86 16 13 C -0.10 -1.35 5.25 -104.62 -0.55 -1.90 16 14 C -0.03 -0.34 9.70 -39.58 -0.38 -0.72 16 15 C -0.14 -1.20 10.05 -39.59 -0.40 -1.60 16 16 C -0.02 -0.14 9.47 -39.58 -0.37 -0.51 16 17 C -0.66 -6.82 5.65 -39.58 -0.22 -7.05 16 18 S 2.49 24.36 5.19 -107.50 -0.56 23.80 16 19 O -0.86 -9.12 17.13 -57.54 -0.99 -10.11 16 20 O -0.85 -10.33 17.13 -57.54 -0.99 -11.32 16 21 C -0.02 -0.21 3.55 101.05 0.36 0.15 16 22 F -0.16 -1.50 17.35 2.25 0.04 -1.46 16 23 F -0.16 -1.64 17.36 2.25 0.04 -1.60 16 24 F -0.15 -1.64 17.35 2.25 0.04 -1.60 16 25 C 0.00 0.05 9.13 -39.58 -0.36 -0.31 16 26 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 27 H 0.38 7.14 8.44 -40.82 -0.34 6.80 16 28 H 0.06 1.16 8.09 -51.93 -0.42 0.74 16 29 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 30 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 31 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 32 H 0.15 0.93 7.57 -52.49 -0.40 0.54 16 33 H 0.15 1.76 7.57 -52.49 -0.40 1.36 16 LS Contribution 328.21 15.07 4.95 4.95 Total: -1.00 -35.62 328.21 -6.97 -42.59 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -2.37 Total: 3.47 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -2.50 Total: -7.00 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.31 Total: -38.34 kcal Atomic # 8 Polarization: -37.66 SS G_CDS: -1.89 Total: -39.55 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 0.12 Total: -4.66 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.03 Total: 14.74 kcal Atomic # 16 Polarization: 24.36 SS G_CDS: -0.56 Total: 23.80 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.62 -6.97 -42.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001420750843.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.272 kcal (2) G-P(sol) polarization free energy of solvation -35.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds