Wall clock time and date at job start Tue Mar 31 2020 19:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86803 * 119.99838 * 2 1 4 4 H 1.48500 * 109.47255 * 274.98817 * 3 2 1 5 5 H 1.48498 * 109.47027 * 34.98763 * 3 2 1 6 6 H 1.48502 * 109.47268 * 154.98796 * 3 2 1 7 7 C 1.40045 * 120.00526 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00412 * 186.15045 * 7 2 1 9 9 C 1.46376 * 119.99754 * 6.14261 * 7 2 1 10 10 O 1.21680 * 120.00097 * 353.94712 * 9 7 2 11 11 N 1.34776 * 119.99835 * 174.21876 * 9 7 2 12 12 C 1.46497 * 119.99869 * 179.72770 * 11 9 7 13 13 C 1.50705 * 109.47399 * 180.02562 * 12 11 9 14 14 C 1.38263 * 119.99790 * 269.72913 * 13 12 11 15 15 C 1.38209 * 119.99652 * 179.78488 * 14 13 12 16 16 C 1.38252 * 120.00538 * 0.43952 * 15 14 13 17 17 C 1.38223 * 119.99693 * 359.81127 * 16 15 14 18 18 S 1.76198 * 120.00246 * 179.97438 * 17 16 15 19 19 O 1.42102 * 104.27390 * 26.05009 * 18 17 16 20 20 O 1.42101 * 104.27763 * 153.90528 * 18 17 16 21 21 C 1.81397 * 104.44970 * 269.98090 * 18 17 16 22 22 F 1.39907 * 109.47172 * 59.99726 * 21 18 17 23 23 F 1.39897 * 109.47272 * 179.97438 * 21 18 17 24 24 F 1.39900 * 109.47146 * 299.99805 * 21 18 17 25 25 C 1.38209 * 119.99903 * 89.99595 * 13 12 11 26 26 H 0.96998 * 119.99932 * 359.97438 * 1 2 3 27 27 H 0.96998 * 120.00266 * 359.72331 * 11 9 7 28 28 H 1.09005 * 109.47213 * 299.99960 * 12 11 9 29 29 H 1.09001 * 109.47022 * 60.00221 * 12 11 9 30 30 H 1.08005 * 120.00020 * 359.97438 * 14 13 12 31 31 H 1.08011 * 120.00109 * 180.27390 * 15 14 13 32 32 H 1.07990 * 120.00387 * 179.83490 * 16 15 14 33 33 H 1.07993 * 120.00506 * 359.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3828 2.1074 -1.3948 5 1 1.4948 2.6199 0.8028 6 1 3.5870 1.4122 0.5920 7 6 2.0070 -1.2128 -0.0005 8 1 3.0824 -1.2155 0.0997 9 6 1.2815 -2.4767 -0.1368 10 8 0.0647 -2.4827 -0.1387 11 7 1.9613 -3.6346 -0.2545 12 6 1.2351 -4.9002 -0.3848 13 6 2.2201 -6.0351 -0.4992 14 6 2.6694 -6.4377 -1.7433 15 6 3.5761 -7.4755 -1.8479 16 6 4.0270 -8.1171 -0.7093 17 6 3.5738 -7.7181 0.5341 18 16 4.1478 -8.5361 1.9853 19 8 5.4207 -9.0497 1.6177 20 8 4.0196 -7.5611 3.0111 21 6 2.9654 -9.8879 2.2404 22 9 2.9758 -10.7332 1.1256 23 9 3.3270 -10.6149 3.3797 24 9 1.6819 -9.3586 2.4124 25 6 2.6701 -6.6770 0.6391 26 1 -0.4850 0.8400 0.0004 27 1 2.9312 -3.6299 -0.2530 28 1 0.6078 -5.0513 0.4937 29 1 0.6098 -4.8701 -1.2771 30 1 2.3142 -5.9391 -2.6331 31 1 3.9306 -7.7872 -2.8194 32 1 4.7334 -8.9298 -0.7912 33 1 2.3162 -6.3651 1.6105 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001420750843.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:47 Heat of formation + Delta-G solvation = -235.115110 kcal Electronic energy + Delta-G solvation = -26450.916958 eV Core-core repulsion = 21768.060486 eV Total energy + Delta-G solvation = -4682.856473 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.043 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.54584 -49.23449 -49.18070 -40.71195 -39.19500 -38.97344 -37.84011 -35.59587 -34.52045 -32.56426 -32.26917 -28.84689 -28.38307 -26.63055 -24.55775 -23.02849 -21.78777 -21.59189 -20.18632 -20.08999 -20.05756 -19.37941 -18.53598 -17.47067 -17.40199 -17.16055 -16.41491 -16.34904 -16.18386 -16.01289 -15.95893 -15.95117 -15.54113 -15.24915 -15.23999 -15.20619 -14.96196 -14.46086 -14.22916 -13.95384 -13.88484 -13.70899 -13.54721 -13.35000 -13.10620 -12.74729 -12.62563 -12.61348 -12.26203 -12.00781 -11.97608 -10.92891 -10.61877 -10.22013 -9.76946 -9.52815 -8.29936 -6.85172 -2.31947 -0.41734 0.11803 0.85788 1.41921 1.42325 1.53680 1.58697 1.87654 1.91368 2.24302 2.35006 2.40874 2.46993 2.75743 3.27453 3.52607 3.58970 3.73415 3.95929 4.11353 4.18610 4.32393 4.66630 4.73269 4.84178 4.87952 5.16442 5.33083 5.38470 5.69006 5.86921 6.17552 6.25194 6.87280 7.51225 8.47294 8.66280 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.020334 B = 0.002760 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.702649 B =10144.235869 C =10332.871855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.030 3.970 3 Si 0.997 3.003 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.249 1.249 7 C -0.574 4.574 8 H 0.087 0.913 9 C 0.539 3.461 10 O -0.631 6.631 11 N -0.751 5.751 12 C 0.170 3.830 13 C -0.120 4.120 14 C -0.032 4.032 15 C -0.127 4.127 16 C -0.008 4.008 17 C -0.662 4.662 18 S 2.515 3.485 19 O -0.865 6.865 20 O -0.881 6.881 21 C -0.016 4.016 22 F -0.153 7.153 23 F -0.163 7.163 24 F -0.160 7.160 25 C -0.009 4.009 26 H 0.275 0.725 27 H 0.395 0.605 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.149 0.851 31 H 0.178 0.822 32 H 0.177 0.823 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.712 -20.868 -1.522 23.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.185 4.185 3 Si 0.817 3.183 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.173 1.173 7 C -0.610 4.610 8 H 0.105 0.895 9 C 0.343 3.657 10 O -0.518 6.518 11 N -0.406 5.406 12 C 0.046 3.954 13 C -0.122 4.122 14 C -0.050 4.050 15 C -0.145 4.145 16 C -0.028 4.028 17 C -0.755 4.755 18 S 2.680 3.320 19 O -0.862 6.862 20 O -0.878 6.878 21 C -0.142 4.142 22 F -0.134 7.134 23 F -0.145 7.145 24 F -0.142 7.142 25 C -0.029 4.029 26 H 0.085 0.915 27 H 0.229 0.771 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.167 0.833 31 H 0.195 0.805 32 H 0.195 0.805 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 11.240 -20.803 -0.924 23.663 hybrid contribution -0.839 0.291 -0.126 0.897 sum 10.401 -20.512 -1.050 23.022 Atomic orbital electron populations 1.70180 1.09511 1.28995 1.36309 1.26953 0.95492 1.04914 0.91190 0.85011 0.78901 0.75211 0.79198 1.18669 1.19861 1.17260 1.21423 0.95243 0.90257 1.54079 0.89475 1.18595 0.86760 0.84138 0.76166 1.90558 1.16147 1.87478 1.57618 1.45874 1.09278 1.04909 1.80543 1.19836 0.92717 0.82025 1.00846 1.19985 0.99945 0.97843 0.94429 1.21840 0.92379 0.93728 0.97089 1.21706 0.96903 0.95491 1.00428 1.21472 0.94169 0.97336 0.89776 1.29583 1.16530 1.13292 1.16070 1.06394 0.74897 0.74504 0.76228 1.93654 1.30184 1.79349 1.83009 1.93681 1.84382 1.51941 1.57780 1.35095 0.97346 1.02868 0.78862 1.93280 1.96576 1.73505 1.50075 1.93266 1.90960 1.80049 1.50199 1.93298 1.40701 1.85135 1.95028 1.20949 0.90911 0.91189 0.99888 0.91523 0.77146 0.93567 0.92649 0.83319 0.80460 0.80528 0.84011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.75 11.85 21.83 0.26 -49.49 16 2 C 0.03 1.64 5.49 85.30 0.47 2.11 16 3 Si 1.00 40.43 29.56 68.60 2.03 42.46 16 4 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 7 C -0.57 -32.06 9.53 24.83 0.24 -31.83 16 8 H 0.09 4.37 7.85 -2.91 -0.02 4.35 16 9 C 0.54 30.68 7.74 86.36 0.67 31.35 16 10 O -0.63 -41.61 15.04 -4.28 -0.06 -41.68 16 11 N -0.75 -32.52 5.54 -471.15 -2.61 -35.13 16 12 C 0.17 6.16 5.80 85.64 0.50 6.66 16 13 C -0.12 -3.13 5.25 -19.86 -0.10 -3.23 16 14 C -0.03 -0.61 9.70 22.27 0.22 -0.40 16 15 C -0.13 -1.70 10.05 22.27 0.22 -1.48 16 16 C -0.01 -0.12 9.47 22.27 0.21 0.10 16 17 C -0.66 -12.51 5.65 22.27 0.13 -12.38 16 18 S 2.51 45.67 5.19 -56.49 -0.29 45.38 16 19 O -0.86 -16.23 17.13 -127.65 -2.19 -18.41 16 20 O -0.88 -21.00 17.13 -127.65 -2.19 -23.19 16 21 C -0.02 -0.29 3.55 113.37 0.40 0.11 16 22 F -0.15 -2.55 17.35 44.97 0.78 -1.77 16 23 F -0.16 -3.09 17.36 44.97 0.78 -2.31 16 24 F -0.16 -3.31 17.35 44.97 0.78 -2.53 16 25 C -0.01 -0.22 9.13 22.27 0.20 -0.02 16 26 H 0.27 15.06 8.29 -92.71 -0.77 14.30 16 27 H 0.39 14.88 8.44 -92.71 -0.78 14.10 16 28 H 0.05 1.81 8.09 -2.38 -0.02 1.79 16 29 H 0.06 2.08 8.08 -2.39 -0.02 2.06 16 30 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 31 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16 32 H 0.18 1.41 7.57 -2.92 -0.02 1.38 16 33 H 0.14 3.50 7.57 -2.91 -0.02 3.48 16 Total: -1.00 -79.65 328.21 0.85 -78.80 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 0.42 Total: 16.89 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 3.15 Total: -9.01 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -2.35 Total: -84.62 kcal Atomic # 8 Polarization: -78.84 SS G_CDS: -4.44 Total: -83.28 kcal Atomic # 9 Polarization: -8.96 SS G_CDS: 2.34 Total: -6.61 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Atomic # 16 Polarization: 45.67 SS G_CDS: -0.29 Total: 45.38 kcal Total: -79.65 0.85 -78.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001420750843.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.317 kcal (2) G-P(sol) polarization free energy of solvation -79.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds