Wall clock time and date at job start Tue Mar 31 2020 20:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.38459 * 120.00227 * 2 1 4 4 N 1.29444 * 125.18582 * 180.02562 * 3 2 1 5 5 C 1.33620 * 116.89423 * 180.02562 * 4 3 2 6 6 C 1.47145 * 122.48123 * 179.97438 * 5 4 3 7 7 O 1.21672 * 120.00262 * 180.02562 * 6 5 4 8 8 N 1.34781 * 119.99998 * 0.02562 * 6 5 4 9 9 C 1.40022 * 120.00195 * 174.39375 * 8 6 5 10 10 C 1.38718 * 120.07573 * 325.91846 * 9 8 6 11 11 C 1.38193 * 120.01812 * 180.25676 * 10 9 8 12 12 C 1.38552 * 120.17634 * 359.44720 * 11 10 9 13 13 F 1.35099 * 119.92452 * 180.28048 * 12 11 10 14 14 C 1.38353 * 120.15421 * 0.55070 * 12 11 10 15 15 C 1.38728 * 119.98061 * 359.72781 * 14 12 11 16 16 O 1.35777 * 120.09009 * 180.02562 * 15 14 12 17 17 C 1.34804 * 116.99909 * 5.80937 * 16 15 14 18 18 H 1.07998 * 119.99788 * 5.47435 * 17 16 15 19 19 C 1.38635 * 119.99803 * 185.47474 * 17 16 15 20 20 N 1.31565 * 120.00313 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99774 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46907 * 90.00129 * 21 19 17 23 23 H 1.48495 * 109.47124 * 209.99947 * 21 19 17 24 24 H 1.48501 * 109.47071 * 330.00572 * 21 19 17 25 25 C 1.35073 * 115.04350 * 0.23541 * 5 4 3 26 26 S 1.76051 * 125.18558 * 0.02562 * 3 2 1 27 27 H 1.09004 * 109.47491 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47231 * 300.00664 * 1 2 3 29 29 H 1.09003 * 109.47179 * 60.00574 * 1 2 3 30 30 H 0.97005 * 119.99670 * 179.97438 * 2 1 3 31 31 H 0.96999 * 119.99208 * 354.39762 * 8 6 5 32 32 H 1.07996 * 119.99663 * 359.97438 * 10 9 8 33 33 H 1.07999 * 119.91021 * 179.72485 * 11 10 9 34 34 H 1.08002 * 120.00679 * 179.74731 * 14 12 11 35 35 H 0.97000 * 120.00591 * 180.02562 * 20 19 17 36 36 H 1.07998 * 125.86889 * 179.75161 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1573 1.1991 0.0000 4 7 3.4465 1.3160 -0.0005 5 6 3.9407 2.5574 0.0001 6 6 5.3863 2.8324 0.0003 7 8 5.7871 3.9812 0.0013 8 7 6.2664 1.8117 -0.0008 9 6 7.6376 2.0696 -0.1191 10 6 8.0809 3.1306 -0.8950 11 6 9.4347 3.3809 -1.0153 12 6 10.3523 2.5813 -0.3532 13 9 11.6743 2.8340 -0.4698 14 6 9.9181 1.5212 0.4226 15 6 8.5609 1.2606 0.5432 16 8 8.1323 0.2211 1.3044 17 6 9.0663 -0.4448 2.0125 18 1 10.0864 -0.0904 2.0282 19 6 8.7174 -1.5845 2.7205 20 7 7.4748 -2.0165 2.7009 21 14 10.0119 -2.5078 3.7011 22 1 10.0651 -1.9667 5.0831 23 1 9.6623 -3.9502 3.7475 24 1 11.3372 -2.3401 3.0525 25 6 3.0153 3.5413 0.0062 26 16 1.4185 2.7971 0.0006 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.9499 -0.8401 0.0004 31 1 5.9499 0.8984 0.0804 32 1 7.3682 3.7585 -1.4089 33 1 9.7781 4.2047 -1.6234 34 1 10.6357 0.8970 0.9344 35 1 7.2306 -2.8138 3.1965 36 1 3.2193 4.6019 0.0115 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001446048731.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:38 Heat of formation + Delta-G solvation = -21.942684 kcal Electronic energy + Delta-G solvation = -25614.015849 eV Core-core repulsion = 21526.925507 eV Total energy + Delta-G solvation = -4087.090342 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.068 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.23757 -40.39015 -39.27545 -38.19906 -36.35887 -35.84496 -34.03606 -32.39136 -30.16623 -29.41230 -28.45367 -26.61906 -25.52753 -24.77689 -22.62562 -21.95996 -21.14178 -19.66919 -18.58327 -18.31888 -17.75367 -16.96610 -16.70571 -15.98382 -15.56413 -15.28552 -15.22538 -15.18519 -14.92705 -14.42506 -14.24774 -14.21906 -13.64811 -13.51433 -13.35291 -13.22917 -13.03379 -12.81035 -12.31291 -12.13892 -11.90309 -11.62599 -11.35925 -10.96581 -10.71888 -10.56352 -10.52286 -9.94928 -9.77468 -9.71848 -9.41499 -9.32596 -8.94105 -7.96763 -7.86091 -7.08048 -6.57223 -4.15141 0.69859 0.94072 1.51799 1.78177 2.13732 2.34990 2.77737 3.08215 3.09206 3.13865 3.59502 3.65738 3.87109 4.36790 4.49261 4.75649 4.88087 4.97838 4.98139 5.12954 5.23778 5.28433 5.39621 5.59762 5.75803 5.83499 6.04818 6.26025 6.34186 6.53450 6.77470 6.92938 6.94009 7.03271 7.08419 7.20669 7.61304 7.69447 7.85493 8.01764 8.54229 8.87672 9.49402 10.59265 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.009703 B = 0.003812 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2884.982636 B = 7342.552614 C = 9935.957630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.696 5.696 3 C 0.348 3.652 4 N -0.523 5.523 5 C 0.068 3.932 6 C 0.586 3.414 7 O -0.530 6.530 8 N -0.628 5.628 9 C 0.059 3.941 10 C -0.048 4.048 11 C -0.229 4.229 12 C 0.131 3.869 13 F -0.151 7.151 14 C -0.258 4.258 15 C 0.161 3.839 16 O -0.165 6.165 17 C -0.393 4.393 18 H 0.095 0.905 19 C 0.043 3.957 20 N -0.855 5.855 21 Si 0.942 3.058 22 H -0.272 1.272 23 H -0.277 1.277 24 H -0.266 1.266 25 C -0.213 4.213 26 S 0.065 5.935 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.419 0.581 31 H 0.424 0.576 32 H 0.136 0.864 33 H 0.124 0.876 34 H 0.144 0.856 35 H 0.272 0.728 36 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.843 4.064 -5.828 15.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.337 5.337 3 C -0.026 4.026 4 N -0.249 5.249 5 C -0.064 4.064 6 C 0.371 3.629 7 O -0.408 6.408 8 N -0.271 5.271 9 C -0.036 4.036 10 C -0.068 4.068 11 C -0.249 4.249 12 C 0.112 3.888 13 F -0.130 7.130 14 C -0.279 4.279 15 C 0.104 3.896 16 O -0.067 6.067 17 C -0.468 4.468 18 H 0.112 0.888 19 C -0.162 4.162 20 N -0.489 5.489 21 Si 0.766 3.234 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.190 1.190 25 C -0.356 4.356 26 S 0.312 5.688 27 H 0.109 0.891 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.257 0.743 31 H 0.262 0.738 32 H 0.153 0.847 33 H 0.142 0.858 34 H 0.161 0.839 35 H 0.081 0.919 36 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -14.828 4.461 -5.690 16.497 hybrid contribution 1.762 -1.098 0.632 2.170 sum -13.066 3.363 -5.058 14.409 Atomic orbital electron populations 1.21771 0.77856 1.04014 1.01902 1.43662 1.05845 1.03756 1.80468 1.24161 0.89655 0.91268 0.97541 1.66622 1.09166 1.23237 1.25908 1.19835 0.95224 0.86582 1.04735 1.17138 0.83676 0.84990 0.77131 1.90799 1.78827 1.20581 1.50595 1.42972 1.03932 1.10894 1.69345 1.16857 0.81605 1.00575 1.04519 1.20467 0.94815 0.95786 0.95765 1.20432 0.92331 1.04036 1.08095 1.17449 0.76746 0.96068 0.98576 1.91411 1.32906 1.93860 1.94797 1.20859 0.96151 1.02449 1.08473 1.18811 0.90587 0.89964 0.90220 1.83959 1.36043 1.36669 1.50051 1.21352 0.91308 1.08210 1.25954 0.88808 1.25295 0.97549 0.95921 0.97435 1.70031 1.16728 1.22960 1.39168 0.85688 0.79584 0.78523 0.79571 1.19758 1.20165 1.19007 1.26621 0.92271 1.04533 1.12219 1.84782 1.09367 0.99480 1.75184 0.89138 0.92095 0.92140 0.74265 0.73758 0.84663 0.85846 0.83896 0.91857 0.79444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.49 10.62 59.85 0.64 1.13 16 2 N -0.70 -6.59 5.86 -67.80 -0.40 -6.99 16 3 C 0.35 4.43 8.42 -88.02 -0.74 3.69 16 4 N -0.52 -8.42 10.03 -10.59 -0.11 -8.52 16 5 C 0.07 1.12 6.67 -84.60 -0.56 0.56 16 6 C 0.59 11.33 7.52 -12.64 -0.10 11.24 16 7 O -0.53 -10.92 14.42 5.21 0.08 -10.84 16 8 N -0.63 -12.95 5.19 -10.76 -0.06 -13.00 16 9 C 0.06 1.28 6.28 -83.47 -0.52 0.76 16 10 C -0.05 -0.95 8.65 -39.42 -0.34 -1.29 16 11 C -0.23 -4.32 10.02 -39.48 -0.40 -4.72 16 12 C 0.13 2.67 7.29 -39.42 -0.29 2.39 16 13 F -0.15 -2.92 17.26 2.25 0.04 -2.89 16 14 C -0.26 -5.77 9.11 -39.36 -0.36 -6.13 16 15 C 0.16 3.84 6.66 -38.93 -0.26 3.58 16 16 O -0.16 -4.46 9.31 0.04 0.00 -4.46 16 17 C -0.39 -10.59 9.44 30.88 0.29 -10.30 16 18 H 0.09 2.37 5.30 -52.49 -0.28 2.09 16 19 C 0.04 1.15 5.49 -17.52 -0.10 1.05 16 20 N -0.86 -23.84 13.67 55.48 0.76 -23.09 16 21 Si 0.94 19.98 29.55 -169.99 -5.02 14.96 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 23 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 25 C -0.21 -2.90 10.83 29.61 0.32 -2.58 16 26 S 0.07 0.69 22.62 -107.50 -2.43 -1.74 16 27 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.42 3.84 8.95 -40.82 -0.37 3.47 16 31 H 0.42 8.91 8.04 -40.82 -0.33 8.58 16 32 H 0.14 2.53 6.48 -52.49 -0.34 2.19 16 33 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 34 H 0.14 3.18 5.71 -52.49 -0.30 2.88 16 35 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 36 H 0.19 2.28 8.01 -52.49 -0.42 1.86 16 LS Contribution 339.53 15.07 5.12 5.12 Total: -1.00 -31.52 339.53 -7.30 -38.82 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -2.86 Total: 13.26 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -2.41 Total: -0.62 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: 0.20 Total: -51.60 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: 0.08 Total: -15.31 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.04 Total: -2.89 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -2.43 Total: -1.74 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.52 -7.30 -38.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001446048731.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.874 kcal (2) G-P(sol) polarization free energy of solvation -31.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds