Wall clock time and date at job start Tue Mar 31 2020 20:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.38459 * 120.00227 * 2 1 4 4 N 1.29444 * 125.18582 * 180.02562 * 3 2 1 5 5 C 1.33620 * 116.89423 * 180.02562 * 4 3 2 6 6 C 1.47145 * 122.48123 * 179.97438 * 5 4 3 7 7 O 1.21672 * 120.00262 * 180.02562 * 6 5 4 8 8 N 1.34781 * 119.99998 * 0.02562 * 6 5 4 9 9 C 1.40022 * 120.00195 * 174.39375 * 8 6 5 10 10 C 1.38718 * 120.07573 * 325.91846 * 9 8 6 11 11 C 1.38193 * 120.01812 * 180.25676 * 10 9 8 12 12 C 1.38552 * 120.17634 * 359.44720 * 11 10 9 13 13 F 1.35099 * 119.92452 * 180.28048 * 12 11 10 14 14 C 1.38353 * 120.15421 * 0.55070 * 12 11 10 15 15 C 1.38728 * 119.98061 * 359.72781 * 14 12 11 16 16 O 1.35777 * 120.09009 * 180.02562 * 15 14 12 17 17 C 1.34804 * 116.99909 * 5.80937 * 16 15 14 18 18 H 1.07998 * 119.99788 * 5.47435 * 17 16 15 19 19 C 1.38635 * 119.99803 * 185.47474 * 17 16 15 20 20 N 1.31565 * 120.00313 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99774 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46907 * 90.00129 * 21 19 17 23 23 H 1.48495 * 109.47124 * 209.99947 * 21 19 17 24 24 H 1.48501 * 109.47071 * 330.00572 * 21 19 17 25 25 C 1.35073 * 115.04350 * 0.23541 * 5 4 3 26 26 S 1.76051 * 125.18558 * 0.02562 * 3 2 1 27 27 H 1.09004 * 109.47491 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47231 * 300.00664 * 1 2 3 29 29 H 1.09003 * 109.47179 * 60.00574 * 1 2 3 30 30 H 0.97005 * 119.99670 * 179.97438 * 2 1 3 31 31 H 0.96999 * 119.99208 * 354.39762 * 8 6 5 32 32 H 1.07996 * 119.99663 * 359.97438 * 10 9 8 33 33 H 1.07999 * 119.91021 * 179.72485 * 11 10 9 34 34 H 1.08002 * 120.00679 * 179.74731 * 14 12 11 35 35 H 0.97000 * 120.00591 * 180.02562 * 20 19 17 36 36 H 1.07998 * 125.86889 * 179.75161 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1573 1.1991 0.0000 4 7 3.4465 1.3160 -0.0005 5 6 3.9407 2.5574 0.0001 6 6 5.3863 2.8324 0.0003 7 8 5.7871 3.9812 0.0013 8 7 6.2664 1.8117 -0.0008 9 6 7.6376 2.0696 -0.1191 10 6 8.0809 3.1306 -0.8950 11 6 9.4347 3.3809 -1.0153 12 6 10.3523 2.5813 -0.3532 13 9 11.6743 2.8340 -0.4698 14 6 9.9181 1.5212 0.4226 15 6 8.5609 1.2606 0.5432 16 8 8.1323 0.2211 1.3044 17 6 9.0663 -0.4448 2.0125 18 1 10.0864 -0.0904 2.0282 19 6 8.7174 -1.5845 2.7205 20 7 7.4748 -2.0165 2.7009 21 14 10.0119 -2.5078 3.7011 22 1 10.0651 -1.9667 5.0831 23 1 9.6623 -3.9502 3.7475 24 1 11.3372 -2.3401 3.0525 25 6 3.0153 3.5413 0.0062 26 16 1.4185 2.7971 0.0006 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.9499 -0.8401 0.0004 31 1 5.9499 0.8984 0.0804 32 1 7.3682 3.7585 -1.4089 33 1 9.7781 4.2047 -1.6234 34 1 10.6357 0.8970 0.9344 35 1 7.2306 -2.8138 3.1965 36 1 3.2193 4.6019 0.0115 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001446048731.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:37 Heat of formation + Delta-G solvation = -43.612883 kcal Electronic energy + Delta-G solvation = -25614.955539 eV Core-core repulsion = 21526.925507 eV Total energy + Delta-G solvation = -4088.030032 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.068 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.84883 -41.85882 -40.73241 -39.63872 -38.04189 -36.71018 -35.63470 -34.33543 -31.34737 -31.01046 -30.05693 -27.48468 -27.32117 -25.97385 -24.09437 -23.42217 -22.61459 -20.95375 -20.18148 -19.77454 -19.43170 -18.32827 -17.93829 -17.34199 -17.02213 -16.95611 -16.55275 -16.40956 -16.10117 -15.98838 -15.66797 -15.57129 -15.40975 -15.24376 -14.86722 -14.22733 -14.15763 -14.01001 -13.78079 -13.43514 -13.29365 -13.07737 -12.86666 -12.61139 -12.36110 -12.14730 -11.71414 -11.46113 -11.39956 -11.08336 -10.84511 -10.74033 -10.25351 -9.60320 -8.91213 -8.73792 -8.51778 -6.19088 -0.40857 0.00884 0.16344 0.43314 0.49024 1.08565 1.35404 1.43139 1.51601 1.94938 2.11724 2.20306 2.27150 2.65731 3.03689 3.13982 3.36772 3.42198 3.90461 4.09871 4.17626 4.28453 4.32375 4.35022 4.57002 4.59578 4.76626 4.86149 4.87917 4.99330 5.19238 5.25815 5.31274 5.46785 5.60232 5.90998 5.97472 6.19979 6.37573 6.77112 6.91290 7.02379 7.60783 8.68777 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.009703 B = 0.003812 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2884.982636 B = 7342.552614 C = 9935.957630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.691 5.691 3 C 0.330 3.670 4 N -0.566 5.566 5 C 0.037 3.963 6 C 0.586 3.414 7 O -0.549 6.549 8 N -0.636 5.636 9 C 0.054 3.946 10 C -0.048 4.048 11 C -0.200 4.200 12 C 0.128 3.872 13 F -0.142 7.142 14 C -0.263 4.263 15 C 0.132 3.868 16 O -0.204 6.204 17 C -0.418 4.418 18 H 0.101 0.899 19 C -0.010 4.010 20 N -0.904 5.904 21 Si 1.014 2.986 22 H -0.266 1.266 23 H -0.268 1.268 24 H -0.255 1.255 25 C -0.215 4.215 26 S 0.154 5.846 27 H 0.116 0.884 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.418 0.582 31 H 0.419 0.581 32 H 0.151 0.849 33 H 0.163 0.837 34 H 0.138 0.862 35 H 0.275 0.725 36 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.825 5.205 -6.499 17.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.331 5.331 3 C -0.044 4.044 4 N -0.295 5.295 5 C -0.094 4.094 6 C 0.373 3.627 7 O -0.428 6.428 8 N -0.279 5.279 9 C -0.040 4.040 10 C -0.068 4.068 11 C -0.220 4.220 12 C 0.108 3.892 13 F -0.121 7.121 14 C -0.284 4.284 15 C 0.079 3.921 16 O -0.109 6.109 17 C -0.494 4.494 18 H 0.118 0.882 19 C -0.210 4.210 20 N -0.541 5.541 21 Si 0.834 3.166 22 H -0.191 1.191 23 H -0.193 1.193 24 H -0.179 1.179 25 C -0.359 4.359 26 S 0.402 5.598 27 H 0.134 0.866 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.256 0.744 31 H 0.256 0.744 32 H 0.168 0.832 33 H 0.181 0.819 34 H 0.155 0.845 35 H 0.084 0.916 36 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -15.850 5.628 -6.393 17.994 hybrid contribution 1.909 -1.240 0.672 2.373 sum -13.942 4.388 -5.721 15.696 Atomic orbital electron populations 1.22107 0.75352 1.06153 1.02677 1.44028 1.07314 1.02826 1.78962 1.24553 0.89516 0.93374 0.96934 1.66546 1.11261 1.23508 1.28138 1.19493 0.93936 0.87888 1.08114 1.17587 0.84885 0.84341 0.75908 1.90752 1.79600 1.20916 1.51521 1.43076 1.03762 1.11080 1.69954 1.17215 0.82227 1.00512 1.04065 1.20710 0.95676 0.95147 0.95266 1.20860 0.91418 1.03577 1.06136 1.17432 0.77442 0.95793 0.98551 1.91435 1.32232 1.93700 1.94693 1.20933 0.95579 1.03120 1.08756 1.19194 0.91788 0.90100 0.91043 1.83939 1.36719 1.38306 1.51929 1.21781 0.91755 1.08921 1.26917 0.88217 1.26462 0.99834 0.96446 0.98245 1.70156 1.18933 1.23956 1.41031 0.84646 0.76938 0.77160 0.77895 1.19056 1.19273 1.17865 1.26969 0.94068 1.04904 1.09959 1.84413 1.05632 0.96278 1.73463 0.86566 0.91420 0.90975 0.74419 0.74413 0.83180 0.81896 0.84462 0.91614 0.78322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.68 10.62 127.77 1.36 2.04 16 2 N -0.69 -12.31 5.86 -368.43 -2.16 -14.47 16 3 C 0.33 8.15 8.42 179.44 1.51 9.66 16 4 N -0.57 -18.64 10.03 -187.42 -1.88 -20.52 16 5 C 0.04 1.25 6.67 40.48 0.27 1.52 16 6 C 0.59 23.27 7.52 86.58 0.65 23.92 16 7 O -0.55 -22.70 14.42 -4.26 -0.06 -22.76 16 8 N -0.64 -27.44 5.19 -306.18 -1.59 -29.03 16 9 C 0.05 2.44 6.28 38.25 0.24 2.68 16 10 C -0.05 -1.84 8.65 22.37 0.19 -1.65 16 11 C -0.20 -7.08 10.02 22.33 0.22 -6.85 16 12 C 0.13 5.03 7.29 22.37 0.16 5.20 16 13 F -0.14 -5.22 17.26 44.97 0.78 -4.44 16 14 C -0.26 -11.96 9.11 22.41 0.20 -11.76 16 15 C 0.13 6.59 6.66 22.69 0.15 6.74 16 16 O -0.20 -11.71 9.31 -22.77 -0.21 -11.92 16 17 C -0.42 -23.62 9.44 67.91 0.64 -22.98 16 18 H 0.10 5.26 5.30 -2.91 -0.02 5.24 16 19 C -0.01 -0.56 5.49 84.83 0.47 -0.09 16 20 N -0.90 -52.80 13.67 21.61 0.30 -52.51 16 21 Si 1.01 41.81 29.55 68.60 2.03 43.84 16 22 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 23 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 24 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 25 C -0.21 -5.61 10.83 67.09 0.73 -4.88 16 26 S 0.15 2.91 22.62 -56.49 -1.28 1.64 16 27 H 0.12 0.42 8.14 -2.39 -0.02 0.41 16 28 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.42 7.55 8.95 -92.70 -0.83 6.72 16 31 H 0.42 18.91 8.04 -92.71 -0.75 18.16 16 32 H 0.15 5.40 6.48 -2.91 -0.02 5.38 16 33 H 0.16 4.52 8.06 -2.91 -0.02 4.50 16 34 H 0.14 6.29 5.71 -2.91 -0.02 6.28 16 35 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 36 H 0.20 4.55 8.01 -2.91 -0.02 4.52 16 Total: -1.00 -71.74 339.53 2.34 -69.41 By element: Atomic # 1 Polarization: 37.61 SS G_CDS: -0.38 Total: 37.23 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 6.80 Total: 3.55 kcal Atomic # 7 Polarization: -111.20 SS G_CDS: -5.33 Total: -116.53 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -0.27 Total: -34.68 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.78 Total: -4.44 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -1.28 Total: 1.64 kcal Total: -71.74 2.34 -69.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001446048731.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.794 kcal (2) G-P(sol) polarization free energy of solvation -71.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds