Wall clock time and date at job start Tue Mar 31 2020 19:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86800 * 119.99879 * 2 1 4 4 H 1.48503 * 109.47238 * 240.00507 * 3 2 1 5 5 H 1.48505 * 109.47076 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47367 * 120.00197 * 3 2 1 7 7 C 1.40022 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00045 * 179.97438 * 7 2 1 9 9 C 1.41331 * 120.00147 * 359.97438 * 7 2 1 10 10 C 1.40618 * 119.78911 * 180.02562 * 9 7 2 11 11 C 1.38312 * 119.13427 * 180.02562 * 10 9 7 12 12 C 1.38679 * 118.67405 * 359.97438 * 11 10 9 13 13 C 1.39671 * 119.49648 * 0.02562 * 12 11 10 14 14 N 1.39137 * 119.57944 * 179.97438 * 13 12 11 15 15 C 1.34772 * 120.00358 * 185.32035 * 14 13 12 16 16 O 1.21703 * 119.99867 * 354.84803 * 15 14 13 17 17 C 1.46592 * 120.00448 * 174.85015 * 15 14 13 18 18 C 1.36587 * 125.99504 * 180.02562 * 17 15 14 19 19 C 1.40347 * 106.70756 * 179.97438 * 18 17 15 20 20 C 1.35143 * 107.11945 * 359.97438 * 19 18 17 21 21 S 1.76201 * 125.61148 * 180.02562 * 20 19 18 22 22 N 1.65601 * 107.21298 * 90.00395 * 21 20 19 23 23 O 1.42102 * 106.39875 * 203.53929 * 21 20 19 24 24 O 1.42097 * 106.40655 * 336.46419 * 21 20 19 25 25 O 1.33937 * 108.77093 * 359.76848 * 20 19 18 26 26 N 1.31951 * 120.84342 * 0.27059 * 13 12 11 27 27 H 0.96998 * 120.00395 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.42580 * 0.04464 * 10 9 7 29 29 H 1.08000 * 120.66089 * 179.97438 * 11 10 9 30 30 H 1.08001 * 120.25376 * 180.02562 * 12 11 10 31 31 H 0.97006 * 119.99954 * 5.59990 * 14 13 12 32 32 H 1.07998 * 126.64165 * 359.95615 * 18 17 15 33 33 H 1.08000 * 126.43732 * 180.02562 * 19 18 17 34 34 H 0.96994 * 120.00302 * 359.97438 * 22 21 20 35 35 H 0.97008 * 119.99691 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0951 1.6965 -1.2126 5 1 1.2763 2.7465 0.0006 6 1 3.0952 1.6965 1.2124 7 6 2.0076 -1.2126 -0.0005 8 1 3.0875 -1.2126 -0.0010 9 6 1.3009 -2.4366 -0.0005 10 6 2.0086 -3.6518 -0.0005 11 6 1.3034 -4.8416 -0.0011 12 6 -0.0826 -4.7937 -0.0011 13 6 -0.7279 -3.5550 -0.0010 14 7 -2.1183 -3.5050 -0.0016 15 6 -2.7500 -2.3194 -0.1098 16 8 -2.1076 -1.2857 -0.1126 17 6 -4.2108 -2.2748 -0.2240 18 6 -4.9728 -1.1472 -0.3398 19 6 -6.3087 -1.5697 -0.4213 20 6 -6.3040 -2.9194 -0.3532 21 16 -7.7286 -3.9546 -0.4114 22 7 -8.0029 -4.3217 -2.0028 23 8 -7.3658 -5.1725 0.2245 24 8 -8.8241 -3.1539 0.0103 25 8 -5.0377 -3.3407 -0.2398 26 7 -0.0357 -2.4317 -0.0064 27 1 -0.4850 0.8400 0.0004 28 1 3.0886 -3.6558 0.0002 29 1 1.8218 -5.7891 -0.0015 30 1 -0.6586 -5.7073 -0.0011 31 1 -2.6332 -4.3231 0.0800 32 1 -4.6164 -0.1280 -0.3637 33 1 -7.1772 -0.9354 -0.5207 34 1 -7.4156 -3.9699 -2.6899 35 1 -8.7510 -4.8886 -2.2478 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001471516317.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:58 Heat of formation + Delta-G solvation = -23.900925 kcal Electronic energy + Delta-G solvation = -26028.671406 eV Core-core repulsion = 21929.123359 eV Total energy + Delta-G solvation = -4099.548047 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.061 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.89664 -39.40623 -37.60056 -37.53230 -36.24033 -34.49299 -33.61506 -33.47258 -33.06861 -30.71344 -30.34945 -29.00993 -25.77846 -24.29607 -22.47077 -21.81620 -21.20969 -20.03109 -19.86546 -19.06079 -18.15519 -17.89222 -17.17543 -16.49504 -16.32780 -16.23745 -15.92359 -14.80591 -14.55221 -14.31701 -14.19862 -13.95186 -13.70201 -13.43178 -13.22558 -12.86692 -12.61591 -12.48537 -12.36801 -12.24033 -12.03289 -11.88208 -11.22542 -11.05392 -10.91589 -10.76162 -10.58024 -10.43416 -10.08715 -9.91820 -9.66318 -9.27071 -9.14694 -8.09994 -7.44097 -7.15020 -6.27557 -4.50828 -0.15228 0.54466 1.85427 2.39309 2.70820 2.82452 2.99348 3.10684 3.12586 3.19655 3.21024 3.50473 3.70453 3.98266 4.42228 4.53145 4.77702 4.81700 5.14277 5.39714 5.46052 5.57750 5.90492 5.96338 6.01386 6.32284 6.39133 6.50918 6.59575 6.70291 6.73998 7.10033 7.39574 7.45441 7.70170 7.83961 8.03569 8.27899 8.52706 8.83486 8.94131 10.07334 10.36396 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.018163 B = 0.003072 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.192413 B = 9113.317496 C =10467.284055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.665 5.665 2 C 0.059 3.941 3 Si 0.900 3.100 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.422 4.422 8 H 0.084 0.916 9 C 0.271 3.729 10 C -0.299 4.299 11 C -0.035 4.035 12 C -0.349 4.349 13 C 0.367 3.633 14 N -0.650 5.650 15 C 0.549 3.451 16 O -0.368 6.368 17 C 0.014 3.986 18 C -0.165 4.165 19 C -0.081 4.081 20 C -0.583 4.583 21 S 2.741 3.259 22 N -1.247 6.247 23 O -0.945 6.945 24 O -0.944 6.944 25 O -0.110 6.110 26 N -0.477 5.477 27 H 0.274 0.726 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.408 0.592 32 H 0.174 0.826 33 H 0.174 0.826 34 H 0.420 0.580 35 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.277 -3.858 -4.544 16.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.284 5.284 2 C -0.170 4.170 3 Si 0.725 3.275 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.453 4.453 8 H 0.102 0.898 9 C 0.146 3.854 10 C -0.322 4.322 11 C -0.059 4.059 12 C -0.375 4.375 13 C 0.129 3.871 14 N -0.297 5.297 15 C 0.328 3.672 16 O -0.231 6.231 17 C -0.044 4.044 18 C -0.185 4.185 19 C -0.102 4.102 20 C -0.714 4.714 21 S 2.823 3.177 22 N -0.924 5.924 23 O -0.934 6.934 24 O -0.933 6.933 25 O -0.004 6.004 26 N -0.196 5.196 27 H 0.085 0.915 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.242 0.758 32 H 0.191 0.809 33 H 0.191 0.809 34 H 0.247 0.753 35 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -15.776 -2.592 -3.618 16.391 hybrid contribution 0.888 -0.027 -0.663 1.109 sum -14.887 -2.619 -4.281 15.710 Atomic orbital electron populations 1.70258 1.06037 1.27719 1.24377 1.26169 0.95120 1.00768 0.94911 0.86510 0.80162 0.81117 0.79752 1.19097 1.20345 1.19090 1.19578 0.94169 0.89312 1.42210 0.89784 1.18351 0.86882 0.92086 0.88056 1.21659 0.98728 0.93433 1.18387 1.20584 0.93057 0.96699 0.95599 1.20496 0.94872 0.94853 1.27268 1.18495 0.82469 0.91323 0.94803 1.43225 1.05801 1.08757 1.71919 1.17005 0.82167 0.86269 0.81732 1.91392 1.60682 1.30868 1.40152 1.23903 0.92688 0.85995 1.01785 1.22171 0.91465 1.00426 1.04475 1.21975 0.99171 0.92968 0.96111 1.35350 1.01146 1.09847 1.25090 1.00921 0.71543 0.72926 0.72336 1.52988 1.43881 1.68362 1.27161 1.93633 1.82818 1.43567 1.73360 1.93663 1.48273 1.71163 1.80236 1.84236 1.13508 1.34026 1.68611 1.68625 1.07411 1.23157 1.20374 0.91467 0.88295 0.88294 0.88693 0.75760 0.80887 0.80889 0.75261 0.74555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.67 -17.70 8.98 55.55 0.50 -17.20 16 2 C 0.06 1.50 5.50 -17.35 -0.10 1.41 16 3 Si 0.90 18.62 29.56 -169.99 -5.02 13.59 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.42 -11.23 9.14 -37.74 -0.34 -11.58 16 8 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 9 C 0.27 7.39 6.55 -84.99 -0.56 6.83 16 10 C -0.30 -7.28 9.83 -38.66 -0.38 -7.66 16 11 C -0.04 -0.78 10.15 -39.39 -0.40 -1.18 16 12 C -0.35 -7.66 9.95 -38.88 -0.39 -8.04 16 13 C 0.37 8.76 7.42 -155.07 -1.15 7.60 16 14 N -0.65 -12.91 5.37 -12.62 -0.07 -12.97 16 15 C 0.55 11.05 7.74 -12.89 -0.10 10.95 16 16 O -0.37 -8.84 12.61 5.19 0.07 -8.77 16 17 C 0.01 0.23 7.13 -36.81 -0.26 -0.03 16 18 C -0.16 -2.26 10.62 -39.38 -0.42 -2.68 16 19 C -0.08 -0.89 10.58 -39.89 -0.42 -1.32 16 20 C -0.58 -6.70 7.32 29.63 0.22 -6.49 16 21 S 2.74 25.32 6.43 -107.50 -0.69 24.63 16 22 N -1.25 -6.30 9.55 60.35 0.58 -5.72 16 23 O -0.94 -12.24 18.02 -57.25 -1.03 -13.27 16 24 O -0.94 -10.68 17.83 -57.17 -1.02 -11.70 16 25 O -0.11 -1.56 10.41 4.97 0.05 -1.51 16 26 N -0.48 -12.99 5.73 -10.27 -0.06 -13.05 16 27 H 0.27 6.79 8.29 -40.82 -0.34 6.45 16 28 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 29 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 30 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 31 H 0.41 6.58 8.46 -40.82 -0.35 6.24 16 32 H 0.17 2.22 8.06 -52.49 -0.42 1.80 16 33 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.42 1.41 8.92 -34.47 -0.31 1.10 16 35 H 0.42 1.26 8.96 -34.47 -0.31 0.95 16 LS Contribution 330.52 15.07 4.98 4.98 Total: -1.00 -36.15 330.52 -8.64 -44.79 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -2.62 Total: 8.38 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -4.30 Total: -12.18 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.95 Total: -48.94 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -1.93 Total: -35.25 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.02 Total: 13.59 kcal Atomic # 16 Polarization: 25.32 SS G_CDS: -0.69 Total: 24.63 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -36.15 -8.64 -44.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471516317.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.890 kcal (2) G-P(sol) polarization free energy of solvation -36.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds