Wall clock time and date at job start Tue Mar 31 2020 19:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86800 * 119.99879 * 2 1 4 4 H 1.48503 * 109.47238 * 240.00507 * 3 2 1 5 5 H 1.48505 * 109.47076 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47367 * 120.00197 * 3 2 1 7 7 C 1.40022 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00045 * 179.97438 * 7 2 1 9 9 C 1.41331 * 120.00147 * 359.97438 * 7 2 1 10 10 C 1.40618 * 119.78911 * 180.02562 * 9 7 2 11 11 C 1.38312 * 119.13427 * 180.02562 * 10 9 7 12 12 C 1.38679 * 118.67405 * 359.97438 * 11 10 9 13 13 C 1.39671 * 119.49648 * 0.02562 * 12 11 10 14 14 N 1.39137 * 119.57944 * 179.97438 * 13 12 11 15 15 C 1.34772 * 120.00358 * 185.32035 * 14 13 12 16 16 O 1.21703 * 119.99867 * 354.84803 * 15 14 13 17 17 C 1.46592 * 120.00448 * 174.85015 * 15 14 13 18 18 C 1.36587 * 125.99504 * 180.02562 * 17 15 14 19 19 C 1.40347 * 106.70756 * 179.97438 * 18 17 15 20 20 C 1.35143 * 107.11945 * 359.97438 * 19 18 17 21 21 S 1.76201 * 125.61148 * 180.02562 * 20 19 18 22 22 N 1.65601 * 107.21298 * 90.00395 * 21 20 19 23 23 O 1.42102 * 106.39875 * 203.53929 * 21 20 19 24 24 O 1.42097 * 106.40655 * 336.46419 * 21 20 19 25 25 O 1.33937 * 108.77093 * 359.76848 * 20 19 18 26 26 N 1.31951 * 120.84342 * 0.27059 * 13 12 11 27 27 H 0.96998 * 120.00395 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.42580 * 0.04464 * 10 9 7 29 29 H 1.08000 * 120.66089 * 179.97438 * 11 10 9 30 30 H 1.08001 * 120.25376 * 180.02562 * 12 11 10 31 31 H 0.97006 * 119.99954 * 5.59990 * 14 13 12 32 32 H 1.07998 * 126.64165 * 359.95615 * 18 17 15 33 33 H 1.08000 * 126.43732 * 180.02562 * 19 18 17 34 34 H 0.96994 * 120.00302 * 359.97438 * 22 21 20 35 35 H 0.97008 * 119.99691 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0951 1.6965 -1.2126 5 1 1.2763 2.7465 0.0006 6 1 3.0952 1.6965 1.2124 7 6 2.0076 -1.2126 -0.0005 8 1 3.0875 -1.2126 -0.0010 9 6 1.3009 -2.4366 -0.0005 10 6 2.0086 -3.6518 -0.0005 11 6 1.3034 -4.8416 -0.0011 12 6 -0.0826 -4.7937 -0.0011 13 6 -0.7279 -3.5550 -0.0010 14 7 -2.1183 -3.5050 -0.0016 15 6 -2.7500 -2.3194 -0.1098 16 8 -2.1076 -1.2857 -0.1126 17 6 -4.2108 -2.2748 -0.2240 18 6 -4.9728 -1.1472 -0.3398 19 6 -6.3087 -1.5697 -0.4213 20 6 -6.3040 -2.9194 -0.3532 21 16 -7.7286 -3.9546 -0.4114 22 7 -8.0029 -4.3217 -2.0028 23 8 -7.3658 -5.1725 0.2245 24 8 -8.8241 -3.1539 0.0103 25 8 -5.0377 -3.3407 -0.2398 26 7 -0.0357 -2.4317 -0.0064 27 1 -0.4850 0.8400 0.0004 28 1 3.0886 -3.6558 0.0002 29 1 1.8218 -5.7891 -0.0015 30 1 -0.6586 -5.7073 -0.0011 31 1 -2.6332 -4.3231 0.0800 32 1 -4.6164 -0.1280 -0.3637 33 1 -7.1772 -0.9354 -0.5207 34 1 -7.4156 -3.9699 -2.6899 35 1 -8.7510 -4.8886 -2.2478 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001471516317.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:58 Heat of formation + Delta-G solvation = -53.208208 kcal Electronic energy + Delta-G solvation = -26029.942266 eV Core-core repulsion = 21929.123359 eV Total energy + Delta-G solvation = -4100.818906 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.061 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.98371 -41.06661 -39.34330 -38.41950 -37.12995 -36.18789 -35.05016 -34.39488 -34.13442 -32.34834 -31.88810 -30.64511 -27.60894 -25.68846 -23.70393 -23.36814 -22.81716 -21.35630 -20.82911 -20.14003 -19.59762 -18.65288 -18.60076 -18.10378 -17.56022 -17.02350 -16.76662 -16.53162 -16.31466 -15.89166 -15.75855 -15.41180 -14.97633 -14.79550 -14.40961 -14.28521 -14.07364 -13.73273 -13.43081 -13.34645 -13.27416 -12.89660 -12.86836 -12.76417 -12.60661 -12.36508 -11.83546 -11.65962 -11.43593 -11.42978 -11.30695 -10.95083 -10.40420 -9.96568 -9.27826 -8.96487 -8.11413 -6.45681 -0.96154 -0.56620 0.70244 0.99377 1.22750 1.30957 1.40937 1.52107 1.53991 1.91943 2.16303 2.16649 2.25707 2.48299 2.95135 3.42290 3.56786 3.70340 3.98823 4.12359 4.23219 4.32493 4.54571 4.65429 4.78913 4.92194 4.94403 4.96784 5.22668 5.23105 5.32292 5.62594 5.70231 5.88143 6.06816 6.26459 6.28823 6.51239 6.73348 7.00644 7.22821 8.22366 8.52504 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.018163 B = 0.003072 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.192413 B = 9113.317496 C =10467.284055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.698 5.698 2 C 0.014 3.986 3 Si 0.978 3.022 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.462 4.462 8 H 0.089 0.911 9 C 0.237 3.763 10 C -0.321 4.321 11 C -0.032 4.032 12 C -0.341 4.341 13 C 0.346 3.654 14 N -0.644 5.644 15 C 0.548 3.452 16 O -0.416 6.416 17 C -0.019 4.019 18 C -0.154 4.154 19 C -0.074 4.074 20 C -0.571 4.571 21 S 2.773 3.227 22 N -1.227 6.227 23 O -0.979 6.979 24 O -0.959 6.959 25 O -0.117 6.117 26 N -0.509 5.509 27 H 0.273 0.727 28 H 0.109 0.891 29 H 0.140 0.860 30 H 0.132 0.868 31 H 0.423 0.577 32 H 0.177 0.823 33 H 0.212 0.788 34 H 0.431 0.569 35 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.997 -4.502 -5.211 18.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.318 5.318 2 C -0.212 4.212 3 Si 0.799 3.201 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.186 1.186 7 C -0.492 4.492 8 H 0.107 0.893 9 C 0.112 3.888 10 C -0.344 4.344 11 C -0.057 4.057 12 C -0.367 4.367 13 C 0.108 3.892 14 N -0.292 5.292 15 C 0.330 3.670 16 O -0.282 6.282 17 C -0.076 4.076 18 C -0.174 4.174 19 C -0.094 4.094 20 C -0.701 4.701 21 S 2.852 3.148 22 N -0.911 5.911 23 O -0.968 6.968 24 O -0.948 6.948 25 O -0.011 6.011 26 N -0.229 5.229 27 H 0.084 0.916 28 H 0.127 0.873 29 H 0.158 0.842 30 H 0.149 0.851 31 H 0.261 0.739 32 H 0.195 0.805 33 H 0.229 0.771 34 H 0.262 0.738 35 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -17.510 -3.282 -4.293 18.325 hybrid contribution 1.215 -0.035 -0.491 1.311 sum -16.295 -3.317 -4.785 17.304 Atomic orbital electron populations 1.70443 1.07499 1.28397 1.25419 1.27020 0.95985 1.04067 0.94092 0.85339 0.78643 0.76300 0.79857 1.18455 1.19744 1.18578 1.19915 0.94630 0.90345 1.44351 0.89312 1.18854 0.87614 0.93552 0.88815 1.21859 0.99460 0.93655 1.19412 1.21051 0.93280 0.97580 0.93743 1.20962 0.95370 0.95499 1.24821 1.18972 0.84028 0.91560 0.94643 1.43200 1.04618 1.09786 1.71603 1.17368 0.83784 0.85558 0.80275 1.91375 1.62583 1.32100 1.42188 1.23080 0.91095 0.87332 1.06091 1.22423 0.92540 1.00062 1.02417 1.22372 0.99023 0.93033 0.94994 1.35920 1.00473 1.10721 1.22970 0.99992 0.70238 0.71717 0.72831 1.52550 1.44545 1.68414 1.25575 1.93600 1.83109 1.45007 1.75127 1.93647 1.48436 1.71394 1.81304 1.84197 1.14296 1.33498 1.69125 1.68594 1.07756 1.25106 1.21455 0.91603 0.87286 0.84201 0.85058 0.73890 0.80509 0.77129 0.73831 0.72873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -38.94 8.98 21.84 0.20 -38.75 16 2 C 0.01 0.72 5.50 85.29 0.47 1.19 16 3 Si 0.98 39.42 29.56 68.60 2.03 41.45 16 4 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 5 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 6 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 7 C -0.46 -25.62 9.14 23.46 0.21 -25.41 16 8 H 0.09 4.58 7.85 -2.91 -0.02 4.56 16 9 C 0.24 13.42 6.55 40.21 0.26 13.68 16 10 C -0.32 -15.83 9.83 22.87 0.22 -15.61 16 11 C -0.03 -1.39 10.15 22.39 0.23 -1.16 16 12 C -0.34 -14.54 9.95 22.72 0.23 -14.31 16 13 C 0.35 16.76 7.42 133.28 0.99 17.75 16 14 N -0.64 -25.97 5.37 -312.06 -1.68 -27.65 16 15 C 0.55 22.82 7.74 86.42 0.67 23.49 16 16 O -0.42 -21.06 12.61 -4.36 -0.05 -21.11 16 17 C -0.02 -0.61 7.13 24.06 0.17 -0.44 16 18 C -0.15 -4.08 10.62 22.40 0.24 -3.84 16 19 C -0.07 -1.43 10.58 22.07 0.23 -1.20 16 20 C -0.57 -11.91 7.32 67.11 0.49 -11.42 16 21 S 2.77 44.46 6.43 -56.49 -0.36 44.10 16 22 N -1.23 -8.62 9.55 37.02 0.35 -8.27 16 23 O -0.98 -23.68 18.02 -127.93 -2.31 -25.99 16 24 O -0.96 -19.00 17.83 -128.00 -2.28 -21.28 16 25 O -0.12 -3.19 10.41 -5.14 -0.05 -3.24 16 26 N -0.51 -28.86 5.73 -186.42 -1.07 -29.93 16 27 H 0.27 14.23 8.29 -92.71 -0.77 13.46 16 28 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 29 H 0.14 4.73 8.06 -2.91 -0.02 4.71 16 30 H 0.13 4.55 8.06 -2.91 -0.02 4.52 16 31 H 0.42 13.57 8.46 -92.70 -0.78 12.79 16 32 H 0.18 4.50 8.06 -2.91 -0.02 4.48 16 33 H 0.21 2.40 8.06 -2.91 -0.02 2.38 16 34 H 0.43 1.49 8.92 -96.75 -0.86 0.62 16 35 H 0.44 1.21 8.96 -96.74 -0.87 0.34 16 Total: -1.00 -81.81 330.52 -2.11 -83.92 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: -1.30 Total: 24.03 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: 4.42 Total: -17.28 kcal Atomic # 7 Polarization: -102.40 SS G_CDS: -2.20 Total: -104.60 kcal Atomic # 8 Polarization: -66.93 SS G_CDS: -4.70 Total: -71.62 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.45 kcal Atomic # 16 Polarization: 44.46 SS G_CDS: -0.36 Total: 44.10 kcal Total: -81.81 -2.11 -83.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471516317.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.711 kcal (2) G-P(sol) polarization free energy of solvation -81.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds