Wall clock time and date at job start Tue Mar 31 2020 19:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34230 * 116.99941 * 2 1 4 4 O 1.20824 * 120.00009 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99777 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.47293 * 179.97438 * 5 3 2 7 7 C 1.36862 * 119.99947 * 270.00090 * 6 5 3 8 8 H 1.08001 * 119.99908 * 144.58400 * 7 6 5 9 9 C 1.39034 * 119.99808 * 324.58566 * 7 6 5 10 10 N 1.31371 * 120.00084 * 155.46563 * 9 7 6 11 11 Si 1.86803 * 120.00064 * 335.46139 * 9 7 6 12 12 H 1.48503 * 109.46958 * 95.33507 * 11 9 7 13 13 H 1.48502 * 109.47099 * 215.33362 * 11 9 7 14 14 H 1.48497 * 109.47218 * 335.33297 * 11 9 7 15 15 C 1.34780 * 119.99788 * 89.99837 * 6 5 3 16 16 O 1.21656 * 119.99912 * 5.65562 * 15 6 5 17 17 C 1.47207 * 119.99689 * 185.66079 * 15 6 5 18 18 C 1.39519 * 120.36031 * 321.65629 * 17 15 6 19 19 C 1.38131 * 120.09745 * 180.02562 * 18 17 15 20 20 C 1.38303 * 120.88886 * 0.02562 * 19 18 17 21 21 Cl 1.73604 * 119.85472 * 179.97438 * 20 19 18 22 22 C 1.38988 * 120.29406 * 359.97438 * 20 19 18 23 23 O 1.34898 * 133.32509 * 179.97438 * 22 20 19 24 24 C 1.34322 * 110.83976 * 180.02562 * 23 22 20 25 25 C 1.34303 * 110.07346 * 0.25959 * 24 23 22 26 26 C 1.40377 * 119.41132 * 0.02562 * 22 20 19 27 27 H 1.09005 * 109.46894 * 300.00240 * 1 2 3 28 28 H 1.08997 * 109.46857 * 59.99743 * 1 2 3 29 29 H 1.08993 * 109.47052 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47260 * 59.99700 * 5 3 2 31 31 H 1.09001 * 109.47281 * 300.00083 * 5 3 2 32 32 H 0.96997 * 120.00537 * 179.97438 * 10 9 7 33 33 H 1.08001 * 119.95514 * 0.04586 * 18 17 15 34 34 H 1.08006 * 119.55505 * 180.02562 * 19 18 17 35 35 H 1.08005 * 124.96075 * 180.02562 * 24 23 22 36 36 H 1.07997 * 126.89821 * 179.69530 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6797 -0.0011 7 6 4.1754 3.3356 -1.1866 8 1 3.9194 4.3813 -1.2733 9 6 4.7017 2.6558 -2.2793 10 7 4.4567 3.0813 -3.4978 11 14 5.7572 1.1374 -2.0148 12 1 4.9115 -0.0784 -2.1240 13 1 6.8254 1.0915 -3.0453 14 1 6.3736 1.1921 -0.6649 15 6 4.1733 3.3262 1.1659 16 8 4.1020 2.7179 2.2171 17 6 4.4687 4.7683 1.1686 18 6 5.2954 5.3206 0.1897 19 6 5.5693 6.6745 0.1977 20 6 5.0341 7.5015 1.1684 21 17 5.3968 9.1992 1.1533 22 6 4.2073 6.9795 2.1561 23 8 3.5582 7.5268 3.2045 24 6 2.8718 6.5921 3.8823 25 6 3.0448 5.3887 3.3116 26 6 3.9206 5.6053 2.1599 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.9558 0.7808 -0.8908 31 1 3.9565 0.7805 0.8891 32 1 4.8241 2.6073 -4.2601 33 1 5.7215 4.6888 -0.5755 34 1 6.2101 7.0928 -0.5645 35 1 2.2717 6.7802 4.7604 36 1 2.6214 4.4500 3.6369 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001530491496.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:32 Heat of formation + Delta-G solvation = -64.246215 kcal Electronic energy + Delta-G solvation = -27031.441677 eV Core-core repulsion = 22895.807669 eV Total energy + Delta-G solvation = -4135.634008 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.060 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.19088 -40.15253 -39.04972 -37.33750 -36.18065 -35.90779 -35.07258 -32.34732 -32.22912 -30.58150 -29.25898 -28.58077 -26.59732 -25.33612 -23.36012 -22.19696 -21.69618 -20.80551 -19.39295 -18.04029 -17.42933 -17.27996 -16.84201 -16.32025 -15.96724 -15.91389 -15.58709 -15.49788 -15.23565 -14.35299 -14.06273 -13.58467 -13.35952 -13.13224 -12.94971 -12.74264 -12.68095 -12.56995 -12.39091 -11.97927 -11.74744 -11.60890 -11.50464 -11.14506 -11.08133 -10.83017 -10.58962 -10.41535 -10.20043 -10.01475 -9.71453 -9.49149 -8.93294 -8.36828 -8.13251 -7.81164 -6.73006 -4.28905 0.85559 1.60117 2.24780 2.58350 2.75674 2.84911 2.87955 2.94374 3.07621 3.10686 3.44750 3.86309 3.99131 4.16709 4.71118 4.74055 5.05551 5.27416 5.30098 5.35960 5.39089 5.44441 5.49613 5.57600 5.70844 5.72755 5.79957 5.82862 6.04399 6.28543 6.51642 6.58937 6.74305 6.75494 6.89941 6.97328 7.30648 7.74637 8.00595 8.29895 8.62836 8.99738 9.29967 10.34813 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.012479 B = 0.004720 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.183847 B = 5930.937280 C = 7405.357977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.369 6.369 3 C 0.448 3.552 4 O -0.486 6.486 5 C 0.106 3.894 6 N -0.434 5.434 7 C -0.356 4.356 8 H 0.118 0.882 9 C 0.069 3.931 10 N -0.835 5.835 11 Si 0.855 3.145 12 H -0.267 1.267 13 H -0.277 1.277 14 H -0.252 1.252 15 C 0.531 3.469 16 O -0.581 6.581 17 C -0.043 4.043 18 C -0.070 4.070 19 C -0.094 4.094 20 C -0.018 4.018 21 Cl -0.072 7.072 22 C 0.043 3.957 23 O -0.190 6.190 24 C -0.007 4.007 25 C -0.184 4.184 26 C -0.081 4.081 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.117 0.883 32 H 0.280 0.720 33 H 0.174 0.826 34 H 0.146 0.854 35 H 0.208 0.792 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.873 1.521 6.688 6.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.286 6.286 3 C 0.289 3.711 4 O -0.370 6.370 5 C -0.019 4.019 6 N -0.153 5.153 7 C -0.482 4.482 8 H 0.135 0.865 9 C -0.142 4.142 10 N -0.467 5.467 11 Si 0.681 3.319 12 H -0.194 1.194 13 H -0.203 1.203 14 H -0.176 1.176 15 C 0.322 3.678 16 O -0.466 6.466 17 C -0.046 4.046 18 C -0.088 4.088 19 C -0.113 4.113 20 C -0.046 4.046 21 Cl -0.044 7.044 22 C -0.004 4.004 23 O -0.091 6.091 24 C -0.072 4.072 25 C -0.203 4.203 26 C -0.083 4.083 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.114 0.886 30 H 0.126 0.874 31 H 0.135 0.865 32 H 0.091 0.909 33 H 0.192 0.808 34 H 0.164 0.836 35 H 0.225 0.775 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.084 1.938 7.013 7.356 hybrid contribution 0.020 -0.743 -0.275 0.793 sum -1.064 1.194 6.738 6.925 Atomic orbital electron populations 1.23149 0.77380 1.02904 1.02313 1.86515 1.22773 1.34355 1.84920 1.24616 0.92712 0.81308 0.72505 1.90639 1.66520 1.36185 1.43688 1.21381 0.87183 0.87890 1.05439 1.43213 1.57202 1.08435 1.06493 1.19309 1.43927 0.98540 0.86435 0.86494 1.25314 0.96325 0.97964 0.94551 1.69787 1.38364 1.40444 0.98142 0.87257 0.81662 0.82794 0.80226 1.19400 1.20307 1.17558 1.17851 0.79860 0.86699 0.83392 1.90669 1.56244 1.68071 1.31575 1.19301 0.97788 0.93407 0.94084 1.22019 0.95729 0.94020 0.97079 1.20893 1.00217 0.93137 0.97061 1.19784 1.02236 0.85449 0.97085 1.98345 1.93793 1.13927 1.98305 1.18915 0.99118 0.91319 0.91097 1.84003 1.53368 1.36928 1.34836 1.23972 0.98256 0.86586 0.98393 1.22568 1.02300 0.99174 0.96263 1.19645 1.00023 0.91628 0.97030 0.92317 0.92119 0.88650 0.87431 0.86496 0.90935 0.80841 0.83591 0.77537 0.82119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.56 101.05 1.07 1.58 16 2 O -0.37 -6.64 10.57 -39.26 -0.41 -7.06 16 3 C 0.45 9.59 8.02 36.00 0.29 9.88 16 4 O -0.49 -11.73 16.18 -18.75 -0.30 -12.04 16 5 C 0.11 2.26 4.88 -5.20 -0.03 2.23 16 6 N -0.43 -10.10 1.69 -117.40 -0.20 -10.30 16 7 C -0.36 -8.62 6.99 -15.01 -0.10 -8.72 16 8 H 0.12 3.01 6.16 -52.49 -0.32 2.69 16 9 C 0.07 1.64 5.28 -17.45 -0.09 1.55 16 10 N -0.83 -21.08 13.95 55.50 0.77 -20.30 16 11 Si 0.86 17.77 25.11 -169.99 -4.27 13.50 16 12 H -0.27 -5.33 6.64 56.52 0.38 -4.95 16 13 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 14 H -0.25 -5.20 7.11 56.52 0.40 -4.80 16 15 C 0.53 12.33 7.29 -12.62 -0.09 12.23 16 16 O -0.58 -14.08 15.95 5.23 0.08 -14.00 16 17 C -0.04 -0.90 5.40 -104.79 -0.57 -1.47 16 18 C -0.07 -1.33 7.64 -39.14 -0.30 -1.63 16 19 C -0.09 -1.56 9.77 -39.60 -0.39 -1.94 16 20 C -0.02 -0.31 6.34 -39.28 -0.25 -0.55 16 21 Cl -0.07 -1.06 28.95 -51.86 -1.50 -2.56 16 22 C 0.04 0.79 7.19 -38.50 -0.28 0.51 16 23 O -0.19 -3.12 10.58 4.00 0.04 -3.07 16 24 C -0.01 -0.11 11.97 29.34 0.35 0.25 16 25 C -0.18 -3.19 10.61 -37.73 -0.40 -3.60 16 26 C -0.08 -1.61 6.12 -104.87 -0.64 -2.25 16 27 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 28 H 0.06 0.86 8.13 -51.93 -0.42 0.43 16 29 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.11 2.24 3.15 -51.93 -0.16 2.08 16 31 H 0.12 2.29 7.35 -51.93 -0.38 1.91 16 32 H 0.28 6.56 8.31 -40.82 -0.34 6.22 16 33 H 0.17 3.38 5.91 -52.49 -0.31 3.07 16 34 H 0.15 1.99 8.06 -52.48 -0.42 1.57 16 35 H 0.21 1.83 8.06 -52.48 -0.42 1.41 16 36 H 0.16 2.77 7.94 -52.49 -0.42 2.35 16 LS Contribution 331.22 15.07 4.99 4.99 Total: -1.00 -30.10 331.22 -5.09 -35.19 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -2.87 Total: 7.58 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: -1.43 Total: 8.06 kcal Atomic # 7 Polarization: -31.18 SS G_CDS: 0.58 Total: -30.60 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -0.59 Total: -36.16 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -4.27 Total: 13.50 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.50 Total: -2.56 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.10 -5.09 -35.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530491496.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.057 kcal (2) G-P(sol) polarization free energy of solvation -30.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds