Wall clock time and date at job start Tue Mar 31 2020 19:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34230 * 116.99941 * 2 1 4 4 O 1.20824 * 120.00009 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99777 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.47293 * 179.97438 * 5 3 2 7 7 C 1.36862 * 119.99947 * 270.00090 * 6 5 3 8 8 H 1.08001 * 119.99908 * 144.58400 * 7 6 5 9 9 C 1.39034 * 119.99808 * 324.58566 * 7 6 5 10 10 N 1.31371 * 120.00084 * 155.46563 * 9 7 6 11 11 Si 1.86803 * 120.00064 * 335.46139 * 9 7 6 12 12 H 1.48503 * 109.46958 * 95.33507 * 11 9 7 13 13 H 1.48502 * 109.47099 * 215.33362 * 11 9 7 14 14 H 1.48497 * 109.47218 * 335.33297 * 11 9 7 15 15 C 1.34780 * 119.99788 * 89.99837 * 6 5 3 16 16 O 1.21656 * 119.99912 * 5.65562 * 15 6 5 17 17 C 1.47207 * 119.99689 * 185.66079 * 15 6 5 18 18 C 1.39519 * 120.36031 * 321.65629 * 17 15 6 19 19 C 1.38131 * 120.09745 * 180.02562 * 18 17 15 20 20 C 1.38303 * 120.88886 * 0.02562 * 19 18 17 21 21 Cl 1.73604 * 119.85472 * 179.97438 * 20 19 18 22 22 C 1.38988 * 120.29406 * 359.97438 * 20 19 18 23 23 O 1.34898 * 133.32509 * 179.97438 * 22 20 19 24 24 C 1.34322 * 110.83976 * 180.02562 * 23 22 20 25 25 C 1.34303 * 110.07346 * 0.25959 * 24 23 22 26 26 C 1.40377 * 119.41132 * 0.02562 * 22 20 19 27 27 H 1.09005 * 109.46894 * 300.00240 * 1 2 3 28 28 H 1.08997 * 109.46857 * 59.99743 * 1 2 3 29 29 H 1.08993 * 109.47052 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47260 * 59.99700 * 5 3 2 31 31 H 1.09001 * 109.47281 * 300.00083 * 5 3 2 32 32 H 0.96997 * 120.00537 * 179.97438 * 10 9 7 33 33 H 1.08001 * 119.95514 * 0.04586 * 18 17 15 34 34 H 1.08006 * 119.55505 * 180.02562 * 19 18 17 35 35 H 1.08005 * 124.96075 * 180.02562 * 24 23 22 36 36 H 1.07997 * 126.89821 * 179.69530 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6797 -0.0011 7 6 4.1754 3.3356 -1.1866 8 1 3.9194 4.3813 -1.2733 9 6 4.7017 2.6558 -2.2793 10 7 4.4567 3.0813 -3.4978 11 14 5.7572 1.1374 -2.0148 12 1 4.9115 -0.0784 -2.1240 13 1 6.8254 1.0915 -3.0453 14 1 6.3736 1.1921 -0.6649 15 6 4.1733 3.3262 1.1659 16 8 4.1020 2.7179 2.2171 17 6 4.4687 4.7683 1.1686 18 6 5.2954 5.3206 0.1897 19 6 5.5693 6.6745 0.1977 20 6 5.0341 7.5015 1.1684 21 17 5.3968 9.1992 1.1533 22 6 4.2073 6.9795 2.1561 23 8 3.5582 7.5268 3.2045 24 6 2.8718 6.5921 3.8823 25 6 3.0448 5.3887 3.3116 26 6 3.9206 5.6053 2.1599 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.9558 0.7808 -0.8908 31 1 3.9565 0.7805 0.8891 32 1 4.8241 2.6073 -4.2601 33 1 5.7215 4.6888 -0.5755 34 1 6.2101 7.0928 -0.5645 35 1 2.2717 6.7802 4.7604 36 1 2.6214 4.4500 3.6369 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001530491496.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:31 Heat of formation + Delta-G solvation = -81.886818 kcal Electronic energy + Delta-G solvation = -27032.206631 eV Core-core repulsion = 22895.807669 eV Total energy + Delta-G solvation = -4136.398962 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.060 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.51948 -41.80888 -40.68191 -38.74945 -37.66595 -37.37808 -36.84874 -34.09556 -33.65895 -32.09004 -30.62658 -30.05249 -27.95856 -27.12999 -24.82286 -23.62113 -23.08574 -22.34390 -21.08263 -19.67144 -19.06372 -18.74279 -18.29753 -17.84101 -17.51460 -17.25546 -17.09542 -17.05225 -16.75199 -16.02002 -15.69537 -15.03133 -14.91573 -14.65408 -14.39930 -14.31597 -14.16195 -13.96250 -13.74458 -13.56932 -13.11678 -13.01457 -12.99895 -12.80815 -12.56569 -12.29343 -12.04155 -11.89622 -11.85152 -11.73876 -11.25599 -11.00518 -10.70576 -10.03114 -9.67659 -9.18671 -8.56404 -6.16936 -0.55331 0.19272 0.91793 1.08117 1.17724 1.26664 1.34451 1.39994 1.46997 1.67064 1.85869 2.13343 2.35439 2.56867 2.97283 3.53146 3.61458 3.81527 3.89070 3.90487 3.97759 4.12352 4.17856 4.27621 4.28671 4.43635 4.49667 4.62260 4.67781 4.92480 5.06769 5.11280 5.24936 5.27553 5.35645 5.50936 5.93989 5.96860 6.11023 6.67310 6.80071 7.17037 7.50335 8.54876 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.012479 B = 0.004720 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.183847 B = 5930.937280 C = 7405.357977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.451 3.549 4 O -0.523 6.523 5 C 0.098 3.902 6 N -0.443 5.443 7 C -0.356 4.356 8 H 0.091 0.909 9 C 0.037 3.963 10 N -0.874 5.874 11 Si 0.904 3.096 12 H -0.249 1.249 13 H -0.271 1.271 14 H -0.252 1.252 15 C 0.527 3.473 16 O -0.600 6.600 17 C -0.084 4.084 18 C -0.068 4.068 19 C -0.094 4.094 20 C -0.010 4.010 21 Cl -0.046 7.046 22 C 0.029 3.971 23 O -0.188 6.188 24 C 0.037 3.963 25 C -0.229 4.229 26 C -0.100 4.100 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.142 0.858 30 H 0.114 0.886 31 H 0.132 0.868 32 H 0.285 0.715 33 H 0.163 0.837 34 H 0.175 0.825 35 H 0.266 0.734 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.947 1.711 7.749 7.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.293 3.707 4 O -0.410 6.410 5 C -0.026 4.026 6 N -0.162 5.162 7 C -0.483 4.483 8 H 0.108 0.892 9 C -0.170 4.170 10 N -0.508 5.508 11 Si 0.727 3.273 12 H -0.175 1.175 13 H -0.197 1.197 14 H -0.175 1.175 15 C 0.319 3.681 16 O -0.486 6.486 17 C -0.087 4.087 18 C -0.086 4.086 19 C -0.112 4.112 20 C -0.037 4.037 21 Cl -0.017 7.017 22 C -0.018 4.018 23 O -0.089 6.089 24 C -0.027 4.027 25 C -0.248 4.248 26 C -0.102 4.102 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.160 0.840 30 H 0.131 0.869 31 H 0.150 0.850 32 H 0.096 0.904 33 H 0.180 0.820 34 H 0.193 0.807 35 H 0.282 0.718 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.161 2.108 8.069 8.421 hybrid contribution -0.067 -0.696 -0.503 0.862 sum -1.228 1.412 7.566 7.794 Atomic orbital electron populations 1.23570 0.74776 1.05938 1.02214 1.86487 1.25202 1.32213 1.84070 1.24563 0.92798 0.81697 0.71662 1.90621 1.67261 1.37550 1.45609 1.21517 0.87660 0.87097 1.06367 1.43243 1.57668 1.09164 1.06130 1.19066 1.44378 0.97854 0.86957 0.89174 1.25804 0.96710 1.00528 0.93927 1.69843 1.39714 1.42323 0.98944 0.86470 0.80408 0.80316 0.80123 1.17511 1.19670 1.17528 1.18261 0.79070 0.87668 0.83089 1.90619 1.57169 1.68813 1.32025 1.19347 1.00359 0.92750 0.96232 1.21927 0.95409 0.95139 0.96169 1.21111 1.00405 0.92024 0.97684 1.19916 1.00825 0.86787 0.96188 1.98354 1.93505 1.11633 1.98192 1.19040 0.99960 0.90796 0.92053 1.84036 1.53181 1.37326 1.34353 1.24953 0.95333 0.84703 0.97731 1.22648 1.04398 1.00557 0.97216 1.19987 1.00397 0.92478 0.97371 0.92206 0.92549 0.84009 0.86857 0.85006 0.90444 0.81982 0.80717 0.71850 0.82867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.56 113.37 1.20 1.93 16 2 O -0.36 -12.72 10.57 -51.42 -0.54 -13.26 16 3 C 0.45 19.43 8.02 71.23 0.57 20.00 16 4 O -0.52 -25.91 16.18 21.97 0.36 -25.55 16 5 C 0.10 4.20 4.88 85.63 0.42 4.62 16 6 N -0.44 -21.21 1.69 -643.57 -1.09 -22.30 16 7 C -0.36 -17.88 6.99 84.10 0.59 -17.29 16 8 H 0.09 4.93 6.16 -2.91 -0.02 4.91 16 9 C 0.04 1.82 5.28 84.95 0.45 2.27 16 10 N -0.87 -45.06 13.95 21.68 0.30 -44.76 16 11 Si 0.90 36.38 25.11 68.60 1.72 38.10 16 12 H -0.25 -9.29 6.64 99.48 0.66 -8.63 16 13 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 14 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 15 C 0.53 25.42 7.29 86.60 0.63 26.05 16 16 O -0.60 -30.04 15.95 -4.21 -0.07 -30.11 16 17 C -0.08 -3.69 5.40 -19.97 -0.11 -3.80 16 18 C -0.07 -2.66 7.64 22.55 0.17 -2.49 16 19 C -0.09 -3.07 9.77 22.26 0.22 -2.86 16 20 C -0.01 -0.31 6.34 22.47 0.14 -0.17 16 21 Cl -0.05 -1.24 28.95 -2.72 -0.08 -1.32 16 22 C 0.03 1.04 7.19 22.97 0.17 1.21 16 23 O -0.19 -5.74 10.58 -8.61 -0.09 -5.83 16 24 C 0.04 0.94 11.97 66.92 0.80 1.74 16 25 C -0.23 -7.92 10.61 23.47 0.25 -7.68 16 26 C -0.10 -4.04 6.12 -20.02 -0.12 -4.16 16 27 H 0.06 1.57 8.13 -2.38 -0.02 1.55 16 28 H 0.06 1.54 8.13 -2.39 -0.02 1.52 16 29 H 0.14 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.11 4.66 3.15 -2.39 -0.01 4.65 16 31 H 0.13 5.17 7.35 -2.39 -0.02 5.15 16 32 H 0.29 13.54 8.31 -92.71 -0.77 12.77 16 33 H 0.16 6.67 5.91 -2.91 -0.02 6.65 16 34 H 0.18 4.56 8.06 -2.91 -0.02 4.53 16 35 H 0.27 3.35 8.06 -2.91 -0.02 3.33 16 36 H 0.15 5.43 7.94 -2.91 -0.02 5.41 16 Total: -1.00 -67.72 331.22 7.00 -60.72 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: 1.12 Total: 24.94 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: 5.37 Total: 19.37 kcal Atomic # 7 Polarization: -66.27 SS G_CDS: -0.78 Total: -67.06 kcal Atomic # 8 Polarization: -74.41 SS G_CDS: -0.35 Total: -74.76 kcal Atomic # 14 Polarization: 36.38 SS G_CDS: 1.72 Total: 38.10 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -0.08 Total: -1.32 kcal Total: -67.72 7.00 -60.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530491496.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.163 kcal (2) G-P(sol) polarization free energy of solvation -67.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds