Wall clock time and date at job start Tue Mar 31 2020 20:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35052 * 125.56737 * 2 1 4 4 O 1.21303 * 127.28722 * 359.97438 * 3 2 1 5 5 C 1.49982 * 105.43425 * 179.97438 * 3 2 1 6 6 O 1.21296 * 127.28927 * 180.02562 * 5 3 2 7 7 N 1.35071 * 105.42808 * 0.02562 * 5 3 2 8 8 C 1.46493 * 125.56531 * 179.97438 * 7 5 3 9 9 C 1.50706 * 109.47128 * 90.02537 * 8 7 5 10 10 O 1.21283 * 119.99503 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00081 * 179.72554 * 9 8 7 12 12 C 1.46506 * 119.99968 * 180.02562 * 11 9 8 13 13 H 1.08995 * 109.47035 * 34.99295 * 12 11 9 14 14 C 1.50698 * 109.47166 * 154.99565 * 12 11 9 15 15 H 1.08001 * 119.99936 * 359.97438 * 14 12 11 16 16 C 1.37878 * 119.99734 * 179.97438 * 14 12 11 17 17 N 1.31513 * 119.99929 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99701 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47294 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.46821 * 120.00567 * 18 16 14 21 21 H 1.48505 * 109.46777 * 240.00283 * 18 16 14 22 22 C 1.53000 * 109.46710 * 275.00042 * 12 11 9 23 23 F 1.39897 * 109.47606 * 59.99509 * 22 12 11 24 24 F 1.39905 * 109.46957 * 180.02562 * 22 12 11 25 25 F 1.39906 * 109.46765 * 299.99577 * 22 12 11 26 26 C 1.34277 * 108.86635 * 0.22826 * 7 5 3 27 27 O 1.21482 * 124.29817 * 179.75530 * 26 7 5 28 28 H 1.09002 * 109.46961 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47515 * 120.02255 * 1 2 3 30 30 H 1.09000 * 109.47037 * 240.02074 * 1 2 3 31 31 H 1.09001 * 109.47786 * 330.02810 * 8 7 5 32 32 H 1.08998 * 109.47558 * 210.02673 * 8 7 5 33 33 H 0.96998 * 120.00525 * 359.97438 * 11 9 8 34 34 H 0.97001 * 119.99929 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2506 1.0986 0.0000 4 8 1.8930 2.2577 -0.0004 5 6 3.6588 0.5823 0.0006 6 8 4.6809 1.2354 0.0013 7 7 3.5480 -0.7638 0.0004 8 6 4.6657 -1.7108 0.0003 9 6 5.0485 -2.0362 1.4211 10 8 4.4471 -1.5269 2.3429 11 7 6.0558 -2.8971 1.6673 12 6 6.4275 -3.2139 3.0485 13 1 5.5336 -3.2246 3.6720 14 6 7.0874 -4.5680 3.0932 15 1 7.2166 -5.1360 2.1837 16 6 7.5262 -5.0817 4.2951 17 7 7.3684 -4.3902 5.4026 18 14 8.3448 -6.7599 4.3503 19 1 8.4008 -7.3287 2.9797 20 1 9.7228 -6.6210 4.8860 21 1 7.5608 -7.6644 5.2293 22 6 7.4006 -2.1548 3.5704 23 9 6.7880 -0.8978 3.5289 24 9 7.7560 -2.4576 4.8893 25 9 8.5480 -2.1411 2.7701 26 6 2.2460 -1.0924 -0.0054 27 8 1.8278 -2.2329 -0.0114 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3634 -0.5142 -0.8897 30 1 -0.3633 -0.5135 0.8902 31 1 5.5185 -1.2664 -0.5130 32 1 4.3679 -2.6244 -0.5142 33 1 6.5342 -3.3076 0.9301 34 1 7.6768 -4.7518 6.2482 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001538122568.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:30 Heat of formation + Delta-G solvation = -239.746760 kcal Electronic energy + Delta-G solvation = -30384.479459 eV Core-core repulsion = 25290.962023 eV Total energy + Delta-G solvation = -5093.517436 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.076 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.43620 -48.07319 -47.74643 -44.55015 -40.89312 -40.47180 -39.87774 -37.70351 -36.74333 -36.24445 -34.53396 -31.92528 -30.16591 -27.85249 -26.82914 -26.58221 -23.97546 -23.24013 -22.75923 -21.67995 -19.77357 -19.20677 -18.95240 -18.83090 -18.67452 -18.33012 -18.20192 -17.76993 -17.49340 -16.97258 -16.63360 -16.54081 -16.05963 -15.97992 -15.82373 -15.42416 -14.99647 -14.90064 -14.52923 -14.46182 -14.30824 -14.18529 -14.05349 -14.01750 -13.90630 -13.58676 -13.45978 -13.05327 -12.73922 -12.66507 -12.29438 -12.21639 -11.93250 -11.56900 -11.44334 -11.17332 -10.77981 -10.70667 -10.16060 -8.22024 -6.52770 -0.94755 0.52384 0.83067 1.30365 1.34342 1.43931 1.48248 1.50292 1.61593 2.13816 2.38784 2.51379 2.64212 2.93985 3.42904 3.51968 3.76991 3.84299 3.95277 4.03336 4.13076 4.18421 4.23322 4.45651 4.60780 4.77507 4.87097 5.31721 5.32955 5.44854 5.51626 5.64041 5.92410 6.30741 6.52210 6.58568 7.13374 7.24634 8.70856 Molecular weight = 337.08amu Principal moments of inertia in cm(-1) A = 0.020669 B = 0.003528 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.350503 B = 7935.028854 C = 8582.581116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.565 5.565 3 C 0.525 3.475 4 O -0.429 6.429 5 C 0.512 3.488 6 O -0.431 6.431 7 N -0.559 5.559 8 C 0.109 3.891 9 C 0.484 3.516 10 O -0.575 6.575 11 N -0.695 5.695 12 C 0.252 3.748 13 H 0.047 0.953 14 C -0.558 4.558 15 H 0.099 0.901 16 C 0.014 3.986 17 N -0.876 5.876 18 Si 0.983 3.017 19 H -0.251 1.251 20 H -0.284 1.284 21 H -0.280 1.280 22 C 0.412 3.588 23 F -0.221 7.221 24 F -0.152 7.152 25 F -0.201 7.201 26 C 0.719 3.281 27 O -0.498 6.498 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.090 0.910 31 H 0.165 0.835 32 H 0.172 0.828 33 H 0.421 0.579 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.507 3.538 -14.874 18.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.314 5.314 3 C 0.305 3.695 4 O -0.295 6.295 5 C 0.293 3.707 6 O -0.297 6.297 7 N -0.306 5.306 8 C -0.014 4.014 9 C 0.269 3.731 10 O -0.454 6.454 11 N -0.347 5.347 12 C 0.145 3.855 13 H 0.065 0.935 14 C -0.594 4.594 15 H 0.117 0.883 16 C -0.192 4.192 17 N -0.510 5.510 18 Si 0.807 3.193 19 H -0.174 1.174 20 H -0.210 1.210 21 H -0.206 1.206 22 C 0.355 3.645 23 F -0.203 7.203 24 F -0.133 7.133 25 F -0.183 7.183 26 C 0.422 3.578 27 O -0.367 6.367 28 H 0.133 0.867 29 H 0.126 0.874 30 H 0.109 0.891 31 H 0.183 0.817 32 H 0.190 0.810 33 H 0.259 0.741 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.793 4.282 -14.016 17.626 hybrid contribution 0.971 -0.486 0.684 1.283 sum -8.822 3.796 -13.332 16.431 Atomic orbital electron populations 1.22361 0.70719 1.06678 1.05971 1.46602 1.11183 1.05815 1.67764 1.20531 0.87220 0.85579 0.76127 1.90837 1.79498 1.17165 1.42013 1.21075 0.91207 0.82569 0.75815 1.90849 1.34474 1.63077 1.41251 1.46184 1.08035 1.08385 1.68017 1.21874 0.89724 0.96319 0.93503 1.21608 0.80008 0.78705 0.92740 1.90727 1.54023 1.52908 1.47697 1.45778 1.34814 1.45130 1.08991 1.19343 0.92925 0.91874 0.81367 0.93541 1.21282 1.41988 1.00166 0.96013 0.88314 1.26016 0.95937 1.02253 0.94963 1.70543 1.43872 1.37130 0.99501 0.85109 0.77342 0.77651 0.79218 1.17438 1.20953 1.20592 1.23374 0.82266 0.81392 0.77419 1.93068 1.83366 1.47340 1.96536 1.93381 1.92510 1.91467 1.35940 1.92995 1.54106 1.96716 1.74454 1.15840 0.80626 0.85080 0.76206 1.91032 1.76212 1.18994 1.50493 0.86719 0.87393 0.89098 0.81745 0.81016 0.74082 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 10.95 127.77 1.40 2.27 16 2 N -0.56 -10.87 3.06 -797.75 -2.44 -13.32 16 3 C 0.52 12.09 8.31 87.39 0.73 12.82 16 4 O -0.43 -11.17 17.65 -3.10 -0.05 -11.22 16 5 C 0.51 13.46 8.31 87.39 0.73 14.18 16 6 O -0.43 -13.57 17.88 -3.08 -0.06 -13.62 16 7 N -0.56 -13.50 2.15 -778.31 -1.67 -15.17 16 8 C 0.11 2.33 6.34 85.64 0.54 2.87 16 9 C 0.48 16.79 7.43 87.66 0.65 17.45 16 10 O -0.57 -25.71 15.01 -3.04 -0.05 -25.75 16 11 N -0.70 -25.03 4.99 -446.09 -2.22 -27.26 16 12 C 0.25 12.05 2.21 44.24 0.10 12.15 16 13 H 0.05 2.60 7.57 -2.39 -0.02 2.58 16 14 C -0.56 -26.75 8.47 25.60 0.22 -26.54 16 15 H 0.10 4.25 7.74 -2.91 -0.02 4.23 16 16 C 0.01 0.68 5.20 84.66 0.44 1.12 16 17 N -0.88 -47.83 9.50 21.45 0.20 -47.63 16 18 Si 0.98 39.31 29.54 68.60 2.03 41.34 16 19 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 20 H -0.28 -11.45 7.11 99.48 0.71 -10.75 16 21 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 22 C 0.41 20.83 2.81 71.98 0.20 21.03 16 23 F -0.22 -11.31 15.69 44.97 0.71 -10.60 16 24 F -0.15 -8.49 12.91 44.97 0.58 -7.90 16 25 F -0.20 -9.49 16.94 44.97 0.76 -8.73 16 26 C 0.72 16.87 8.32 179.37 1.49 18.36 16 27 O -0.50 -13.48 17.38 -3.66 -0.06 -13.54 16 28 H 0.11 0.93 7.76 -2.39 -0.02 0.91 16 29 H 0.11 0.72 8.14 -2.39 -0.02 0.71 16 30 H 0.09 0.95 8.14 -2.39 -0.02 0.94 16 31 H 0.17 2.47 8.10 -2.39 -0.02 2.45 16 32 H 0.17 2.40 7.97 -2.39 -0.02 2.38 16 33 H 0.42 11.63 8.54 -92.71 -0.79 10.84 16 34 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -73.89 324.64 4.64 -69.25 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 0.42 Total: 8.44 kcal Atomic # 6 Polarization: 69.22 SS G_CDS: 6.49 Total: 75.71 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -6.13 Total: -103.37 kcal Atomic # 8 Polarization: -63.92 SS G_CDS: -0.22 Total: -64.14 kcal Atomic # 9 Polarization: -29.28 SS G_CDS: 2.05 Total: -27.23 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.34 kcal Total: -73.89 4.64 -69.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001538122568.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.498 kcal (2) G-P(sol) polarization free energy of solvation -73.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds