Wall clock time and date at job start Tue Mar 31 2020 20:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 117.00066 * 2 1 4 4 O 1.20828 * 119.99612 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00057 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.47268 * 180.02562 * 5 3 2 7 7 N 1.46496 * 109.47539 * 180.02562 * 6 5 3 8 8 C 1.36652 * 120.00241 * 97.04495 * 7 6 5 9 9 H 1.08003 * 119.99592 * 322.75157 * 8 7 6 10 10 C 1.39197 * 119.99846 * 143.02480 * 8 7 6 11 11 N 1.31257 * 120.00205 * 341.26828 * 10 8 7 12 12 Si 1.86799 * 119.99754 * 161.26879 * 10 8 7 13 13 H 1.48503 * 109.47288 * 94.99135 * 12 10 8 14 14 H 1.48502 * 109.47041 * 214.99056 * 12 10 8 15 15 H 1.48499 * 109.47374 * 334.98728 * 12 10 8 16 16 C 1.34779 * 119.99920 * 277.04873 * 7 6 5 17 17 O 1.21574 * 120.00267 * 175.82673 * 16 7 6 18 18 C 1.47993 * 119.99894 * 355.82169 * 16 7 6 19 19 C 1.39490 * 119.55980 * 185.99351 * 18 16 7 20 20 C 1.38273 * 119.23405 * 179.73003 * 19 18 16 21 21 C 1.40024 * 118.38579 * 0.53668 * 20 19 18 22 22 C 1.43199 * 120.47230 * 179.70715 * 21 20 19 23 23 N 7.40695 * 99.46742 * 72.22546 * 2 1 3 24 24 C 1.40056 * 119.05837 * 359.72660 * 21 20 19 25 25 Cl 1.73602 * 119.66376 * 179.97438 * 24 21 20 26 26 N 1.31473 * 120.67096 * 0.02562 * 24 21 20 27 27 H 1.09003 * 109.47124 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47244 * 299.99536 * 1 2 3 29 29 H 1.09005 * 109.47369 * 59.99688 * 1 2 3 30 30 H 1.09003 * 109.47213 * 60.00482 * 5 3 2 31 31 H 1.08993 * 109.47374 * 300.00085 * 5 3 2 32 32 H 1.09003 * 109.46995 * 59.99877 * 6 5 3 33 33 H 1.09000 * 109.46960 * 300.00187 * 6 5 3 34 34 H 0.97006 * 120.00044 * 185.03582 * 11 10 8 35 35 H 1.07996 * 120.38436 * 359.97438 * 19 18 16 36 36 H 1.07999 * 120.80962 * 180.26651 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4631 2.8188 -0.0010 8 6 6.1368 3.0005 -1.1759 9 1 5.7858 2.5233 -2.0790 10 6 7.2787 3.7959 -1.2075 11 7 7.5083 4.6533 -0.2407 12 14 8.4844 3.6429 -2.6261 13 1 8.1721 4.6681 -3.6540 14 1 9.8670 3.8494 -2.1251 15 1 8.3728 2.2895 -3.2269 16 6 6.1445 2.7102 1.1567 17 8 7.3602 2.6976 1.1478 18 6 5.4129 2.6063 2.4390 19 6 6.1230 2.6208 3.6396 20 6 5.4323 2.5290 4.8338 21 6 4.0376 2.4128 4.7890 22 6 3.2782 2.3085 5.9986 23 7 2.6703 2.2303 6.9573 24 6 3.3958 2.3997 3.5442 25 17 1.6673 2.2557 3.4702 26 7 4.0891 2.4944 2.4311 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 3.9557 0.7810 -0.8909 31 1 3.9564 0.7806 0.8891 32 1 3.6107 3.2356 0.8907 33 1 3.6100 3.2368 -0.8893 34 1 8.2643 5.2585 -0.2984 35 1 7.1996 2.7067 3.6364 36 1 5.9560 2.5420 5.7782 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001544785792.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:31 Heat of formation + Delta-G solvation = -20.294679 kcal Electronic energy + Delta-G solvation = -26957.901169 eV Core-core repulsion = 22856.465794 eV Total energy + Delta-G solvation = -4101.435375 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.066 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.54723 -40.01171 -38.22025 -36.62822 -36.47827 -36.26082 -34.76699 -33.01998 -32.25970 -31.02512 -30.34471 -27.52469 -26.19022 -24.57114 -23.51549 -23.25826 -20.67176 -20.04600 -19.18341 -17.69222 -17.45020 -16.87947 -16.34638 -16.28933 -15.75577 -15.23286 -14.88985 -14.72077 -14.52453 -13.96595 -13.70939 -13.67874 -13.35344 -13.17963 -12.94362 -12.88642 -12.68923 -12.30468 -12.11076 -12.00671 -11.71953 -11.51809 -11.34399 -11.28533 -11.08325 -10.87086 -10.74581 -10.58602 -10.40574 -10.12824 -9.84211 -9.30078 -9.05216 -8.80934 -8.41000 -7.39949 -6.47983 -4.07213 0.32420 1.14531 1.71745 2.58401 2.60314 2.76119 2.98520 3.15665 3.24686 3.26807 3.59568 3.72978 4.00376 4.38700 4.50969 4.61649 4.92186 5.01661 5.08817 5.17323 5.23521 5.24858 5.28108 5.49605 5.55699 5.63770 5.79697 5.90946 6.07987 6.12125 6.44786 6.50230 6.66565 7.00318 7.24322 7.38462 7.66205 7.86178 8.10090 8.63402 8.82879 9.25660 9.98054 10.57210 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.010692 B = 0.005244 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.236087 B = 5337.966847 C = 7567.792869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.366 6.366 3 C 0.469 3.531 4 O -0.501 6.501 5 C -0.115 4.115 6 C 0.106 3.894 7 N -0.408 5.408 8 C -0.316 4.316 9 H 0.095 0.905 10 C 0.056 3.944 11 N -0.790 5.790 12 Si 0.924 3.076 13 H -0.279 1.279 14 H -0.280 1.280 15 H -0.267 1.267 16 C 0.477 3.523 17 O -0.527 6.527 18 C 0.161 3.839 19 C -0.129 4.129 20 C -0.020 4.020 21 C -0.093 4.093 22 C 0.264 3.736 23 N -0.414 5.414 24 C 0.218 3.782 25 Cl -0.024 7.024 26 N -0.461 5.461 27 H 0.094 0.906 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.072 0.928 34 H 0.273 0.727 35 H 0.161 0.839 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.210 -6.067 3.775 10.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.283 6.283 3 C 0.312 3.688 4 O -0.387 6.387 5 C -0.153 4.153 6 C -0.019 4.019 7 N -0.124 5.124 8 C -0.443 4.443 9 H 0.113 0.887 10 C -0.158 4.158 11 N -0.423 5.423 12 Si 0.750 3.250 13 H -0.205 1.205 14 H -0.205 1.205 15 H -0.191 1.191 16 C 0.267 3.733 17 O -0.405 6.405 18 C 0.023 3.977 19 C -0.151 4.151 20 C -0.048 4.048 21 C -0.101 4.101 22 C -0.051 4.051 23 N -0.090 5.090 24 C 0.048 3.952 25 Cl 0.005 6.995 26 N -0.176 5.176 27 H 0.113 0.887 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.132 0.868 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.178 0.822 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.134 -5.805 4.493 10.957 hybrid contribution 0.635 0.145 -0.199 0.681 sum -7.500 -5.660 4.295 10.331 Atomic orbital electron populations 1.23146 0.77341 1.03006 1.02230 1.86531 1.22697 1.34413 1.84652 1.23872 0.92158 0.80980 0.71836 1.90636 1.67139 1.36077 1.44883 1.21754 0.86376 1.02235 1.04979 1.21986 0.82559 0.92605 1.04712 1.43355 1.03757 1.58935 1.06380 1.19513 1.08608 1.28779 0.87449 0.88725 1.25341 0.98634 0.94252 0.97533 1.69796 1.27139 1.14525 1.30804 0.85981 0.80051 0.78898 0.80107 1.20542 1.20509 1.19128 1.17091 0.86710 0.87787 0.81747 1.90651 1.12073 1.53380 1.84430 1.22324 0.86893 0.91523 0.96925 1.22061 1.03026 0.99395 0.90598 1.21527 0.90554 0.92959 0.99726 1.16502 0.92940 1.14020 0.86673 1.25302 0.93446 0.93695 0.92677 1.81281 1.07839 1.09258 1.10643 1.21875 0.87960 0.96480 0.88912 1.98430 1.07023 1.95504 1.98546 1.67961 1.08345 1.14745 1.26596 0.88715 0.92286 0.92177 0.88337 0.88179 0.86832 0.90990 0.91629 0.82184 0.83089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.56 101.05 1.07 1.47 16 2 O -0.37 -5.20 10.57 -39.25 -0.41 -5.61 16 3 C 0.47 7.51 7.96 36.00 0.29 7.80 16 4 O -0.50 -8.89 15.73 -18.75 -0.29 -9.19 16 5 C -0.11 -1.90 5.51 -27.88 -0.15 -2.05 16 6 C 0.11 2.05 4.24 -4.04 -0.02 2.03 16 7 N -0.41 -9.30 2.56 -115.85 -0.30 -9.59 16 8 C -0.32 -7.70 9.27 -15.05 -0.14 -7.84 16 9 H 0.10 2.15 7.90 -52.48 -0.41 1.74 16 10 C 0.06 1.41 4.38 -17.44 -0.08 1.34 16 11 N -0.79 -20.99 11.19 55.51 0.62 -20.36 16 12 Si 0.92 19.51 29.60 -169.99 -5.03 14.48 16 13 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 14 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 15 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 16 C 0.48 11.00 6.79 -12.26 -0.08 10.92 16 17 O -0.53 -13.79 13.62 5.30 0.07 -13.72 16 18 C 0.16 2.99 6.54 -82.96 -0.54 2.45 16 19 C -0.13 -1.98 9.61 -39.10 -0.38 -2.35 16 20 C -0.02 -0.25 9.89 -38.90 -0.38 -0.63 16 21 C -0.09 -1.27 5.76 -106.62 -0.61 -1.88 16 22 C 0.26 3.66 14.41 -22.41 -0.32 3.34 16 23 N -0.41 -6.26 18.55 41.91 0.78 -5.48 16 24 C 0.22 3.34 7.31 -17.02 -0.12 3.22 16 25 Cl -0.02 -0.35 28.18 -51.86 -1.46 -1.81 16 26 N -0.46 -7.94 4.38 -6.62 -0.03 -7.97 16 27 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.65 8.13 -51.93 -0.42 0.22 16 29 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 30 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 31 H 0.10 1.66 6.88 -51.93 -0.36 1.30 16 32 H 0.11 2.27 5.09 -54.41 -0.28 1.99 16 33 H 0.07 1.42 7.94 -51.93 -0.41 1.01 16 34 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.16 2.41 7.64 -52.49 -0.40 2.01 16 36 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 342.29 15.07 5.16 5.16 Total: -1.00 -29.56 342.29 -5.49 -35.05 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -3.11 Total: 1.26 kcal Atomic # 6 Polarization: 19.28 SS G_CDS: -1.48 Total: 17.80 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: 1.07 Total: -43.41 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.64 Total: -28.52 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.48 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.46 Total: -1.81 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.56 -5.49 -35.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544785792.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.751 kcal (2) G-P(sol) polarization free energy of solvation -29.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds