Wall clock time and date at job start Tue Mar 31 2020 20:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99932 * 2 1 4 4 H 1.48499 * 109.47052 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.46994 * 119.99800 * 3 2 1 6 6 H 1.48498 * 109.46721 * 240.00152 * 3 2 1 7 7 C 1.37875 * 120.00140 * 180.27708 * 2 1 3 8 8 H 1.07994 * 120.00207 * 152.17643 * 7 2 1 9 9 C 1.50707 * 119.99980 * 332.17027 * 7 2 1 10 10 H 1.09003 * 109.46703 * 54.17435 * 9 7 2 11 11 N 1.46498 * 109.47297 * 174.17224 * 9 7 2 12 12 C 1.34767 * 120.00039 * 205.00196 * 11 9 7 13 13 O 1.21585 * 120.00229 * 0.02562 * 12 11 9 14 14 N 1.34778 * 119.99941 * 180.02562 * 12 11 9 15 15 C 1.46498 * 120.00083 * 180.02562 * 14 12 11 16 16 C 1.50706 * 109.47198 * 179.97438 * 15 14 12 17 17 C 1.35316 * 126.65825 * 89.70878 * 16 15 14 18 18 C 1.42294 * 103.91647 * 179.97438 * 17 16 15 19 19 C 1.48245 * 126.94147 * 180.12073 * 18 17 16 20 20 O 1.21406 * 119.99703 * 0.23109 * 19 18 17 21 21 O 1.34650 * 119.99882 * 180.22957 * 19 18 17 22 22 N 1.31017 * 106.11730 * 0.33387 * 18 17 16 23 23 O 1.20904 * 111.43114 * 359.78390 * 22 18 17 24 24 C 1.53002 * 109.47310 * 294.17834 * 9 7 2 25 25 F 1.39904 * 109.47165 * 56.80993 * 24 9 7 26 26 F 1.39898 * 109.47073 * 176.81188 * 24 9 7 27 27 F 1.39898 * 109.46934 * 296.81032 * 24 9 7 28 28 H 0.96997 * 120.00172 * 174.46880 * 1 2 3 29 29 H 0.97003 * 119.99743 * 25.00739 * 11 9 7 30 30 H 0.96998 * 119.99939 * 359.97438 * 14 12 11 31 31 H 1.08997 * 109.47234 * 299.99502 * 15 14 12 32 32 H 1.08997 * 109.47408 * 59.99684 * 15 14 12 33 33 H 1.07999 * 128.03717 * 0.02562 * 17 16 15 34 34 H 0.96699 * 116.99593 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0058 8 1 2.9908 -1.2460 -0.4426 9 6 1.3818 -2.4266 0.5976 10 1 0.4039 -2.5972 0.1471 11 7 2.2444 -3.5834 0.3447 12 6 1.7181 -4.8238 0.3194 13 8 0.5272 -4.9828 0.5060 14 7 2.5118 -5.8880 0.0872 15 6 1.9396 -7.2363 0.0592 16 6 3.0299 -8.2391 -0.2180 17 6 3.7983 -8.8712 0.6991 18 6 4.6542 -9.6970 -0.0822 19 6 5.7049 -10.6157 0.4172 20 8 5.9015 -10.7217 1.6105 21 8 6.4413 -11.3328 -0.4528 22 7 4.3291 -9.4778 -1.3324 23 8 3.4313 -8.6728 -1.4208 24 6 1.2209 -2.2304 2.1064 25 9 0.4571 -1.0836 2.3488 26 9 0.5769 -3.3444 2.6555 27 9 2.4818 -2.0839 2.6946 28 1 -0.4850 -0.8361 -0.0810 29 1 3.1945 -3.4565 0.1955 30 1 3.4618 -5.7611 -0.0620 31 1 1.4799 -7.4560 1.0227 32 1 1.1850 -7.2946 -0.7252 33 1 3.7683 -8.7726 1.7741 34 1 7.1148 -11.9179 -0.0798 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574242611.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:10 Heat of formation + Delta-G solvation = -203.580023 kcal Electronic energy + Delta-G solvation = -28901.202933 eV Core-core repulsion = 23809.253804 eV Total energy + Delta-G solvation = -5091.949129 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.076 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.78053 -46.33303 -46.23376 -45.69283 -40.59285 -39.63877 -36.75683 -35.83189 -34.78945 -34.49260 -32.90140 -32.11240 -28.57184 -26.59399 -26.13993 -24.48995 -23.39217 -21.96507 -21.31031 -20.56966 -18.94566 -18.50129 -18.36959 -18.04753 -17.38193 -17.12817 -17.05503 -17.00735 -16.41439 -16.11427 -15.56418 -15.11921 -14.63722 -14.30977 -13.94881 -13.92814 -13.55161 -13.49960 -13.24407 -13.02023 -12.77305 -12.72194 -12.55855 -12.46234 -12.42824 -12.25123 -12.09282 -11.53034 -11.34780 -11.13456 -11.10669 -10.79889 -10.35056 -10.22751 -9.78717 -9.59503 -9.17174 -8.50475 -8.41737 -6.82517 -4.53865 0.37810 0.91850 2.03390 2.29734 2.36940 3.01378 3.29207 3.36419 3.43859 3.49800 3.53944 4.10899 4.15614 4.29207 4.32342 4.52881 4.62435 4.84860 4.86156 5.23464 5.27176 5.38433 5.42766 5.55481 5.70234 5.76156 6.33649 6.50159 6.92739 7.06414 7.14344 7.42831 7.45628 8.06489 8.32978 8.41080 8.90316 9.13884 10.52561 Molecular weight = 337.08amu Principal moments of inertia in cm(-1) A = 0.021096 B = 0.002481 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.940015 B =11282.842330 C =11476.360226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.053 3.947 3 Si 1.059 2.941 4 H -0.278 1.278 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.651 4.651 8 H 0.074 0.926 9 C 0.255 3.745 10 H 0.080 0.920 11 N -0.717 5.717 12 C 0.702 3.298 13 O -0.580 6.580 14 N -0.752 5.752 15 C 0.223 3.777 16 C -0.038 4.038 17 C -0.154 4.154 18 C -0.023 4.023 19 C 0.573 3.427 20 O -0.491 6.491 21 O -0.498 6.498 22 N -0.299 5.299 23 O 0.146 5.854 24 C 0.413 3.587 25 F -0.176 7.176 26 F -0.205 7.205 27 F -0.198 7.198 28 H 0.278 0.722 29 H 0.398 0.602 30 H 0.398 0.602 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.190 0.810 34 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.341 -16.911 -0.756 19.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.161 4.161 3 Si 0.885 3.115 4 H -0.204 1.204 5 H -0.207 1.207 6 H -0.209 1.209 7 C -0.686 4.686 8 H 0.092 0.908 9 C 0.148 3.852 10 H 0.097 0.903 11 N -0.369 5.369 12 C 0.402 3.598 13 O -0.457 6.457 14 N -0.411 5.411 15 C 0.098 3.902 16 C -0.101 4.101 17 C -0.177 4.177 18 C -0.179 4.179 19 C 0.414 3.586 20 O -0.376 6.376 21 O -0.310 6.310 22 N 0.006 4.994 23 O 0.062 5.938 24 C 0.357 3.643 25 F -0.157 7.157 26 F -0.187 7.187 27 F -0.180 7.180 28 H 0.089 0.911 29 H 0.232 0.768 30 H 0.232 0.768 31 H 0.125 0.875 32 H 0.115 0.885 33 H 0.208 0.792 34 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 8.264 -15.750 -1.434 17.844 hybrid contribution 1.533 -1.877 1.207 2.708 sum 9.798 -17.628 -0.227 20.169 Atomic orbital electron populations 1.70753 1.07638 1.31830 1.37082 1.25915 0.95645 1.02827 0.91705 0.83710 0.75537 0.75097 0.77149 1.20351 1.20653 1.20950 1.21569 1.06306 0.93344 1.47413 0.90827 1.19572 0.95042 0.85297 0.85315 0.90252 1.45083 1.12368 1.04130 1.75302 1.15959 0.85186 0.80573 0.78051 1.90948 1.13465 1.84778 1.56526 1.45019 1.11561 1.04578 1.79989 1.19445 0.89355 0.76879 1.04532 1.24557 1.00875 1.01280 0.83411 1.22547 0.95213 0.97133 1.02777 1.22224 1.01753 1.03496 0.90401 1.19109 0.78774 0.77364 0.83368 1.90957 1.66524 1.63651 1.16482 1.84595 1.49006 1.54993 1.42397 1.74400 1.01068 1.04279 1.19651 1.84894 1.36647 1.41227 1.31007 1.23070 0.72698 0.73049 0.95483 1.93154 1.76001 1.51132 1.95457 1.93100 1.82508 1.54284 1.88770 1.93015 1.42443 1.95643 1.86896 0.91073 0.76766 0.76841 0.87484 0.88490 0.79232 0.71843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.19 12.35 55.43 0.68 -22.51 16 2 C 0.05 1.37 4.23 -17.82 -0.08 1.30 16 3 Si 1.06 22.90 29.99 -169.99 -5.10 17.80 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 7 C -0.65 -16.13 8.32 -34.44 -0.29 -16.42 16 8 H 0.07 1.75 7.86 -52.49 -0.41 1.34 16 9 C 0.25 5.97 2.00 -69.08 -0.14 5.83 16 10 H 0.08 2.07 6.46 -51.93 -0.34 1.73 16 11 N -0.72 -13.52 4.94 -59.81 -0.30 -13.81 16 12 C 0.70 12.40 8.17 -86.93 -0.71 11.69 16 13 O -0.58 -12.42 14.91 5.29 0.08 -12.34 16 14 N -0.75 -9.06 5.55 -66.42 -0.37 -9.43 16 15 C 0.22 2.14 6.23 -5.19 -0.03 2.10 16 16 C -0.04 -0.33 6.84 -35.35 -0.24 -0.57 16 17 C -0.15 -1.31 10.92 -39.07 -0.43 -1.74 16 18 C -0.02 -0.23 7.24 -82.54 -0.60 -0.82 16 19 C 0.57 5.46 8.36 34.84 0.29 5.75 16 20 O -0.49 -5.62 17.74 -19.19 -0.34 -5.96 16 21 O -0.50 -3.51 13.44 -40.36 -0.54 -4.05 16 22 N -0.30 -3.20 12.12 33.29 0.40 -2.79 16 23 O 0.15 1.42 11.18 17.26 0.19 1.61 16 24 C 0.41 9.91 2.82 37.16 0.10 10.02 16 25 F -0.18 -4.56 14.71 2.25 0.03 -4.53 16 26 F -0.20 -4.85 15.77 2.25 0.04 -4.82 16 27 F -0.20 -4.55 16.97 2.25 0.04 -4.51 16 28 H 0.28 7.72 7.25 -40.82 -0.30 7.42 16 29 H 0.40 6.44 8.54 -40.82 -0.35 6.09 16 30 H 0.40 3.86 8.48 -40.82 -0.35 3.51 16 31 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.19 1.33 8.06 -52.49 -0.42 0.90 16 34 H 0.42 0.73 9.11 45.56 0.42 1.15 16 LS Contribution 328.16 15.07 4.95 4.95 Total: -1.00 -32.88 328.16 -3.73 -36.62 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -1.39 Total: 6.65 kcal Atomic # 6 Polarization: 19.26 SS G_CDS: -2.11 Total: 17.15 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 0.42 Total: -48.55 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.61 Total: -20.75 kcal Atomic # 9 Polarization: -13.97 SS G_CDS: 0.11 Total: -13.86 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.10 Total: 17.80 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.88 -3.73 -36.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574242611.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.965 kcal (2) G-P(sol) polarization free energy of solvation -32.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds