Wall clock time and date at job start Tue Mar 31 2020 20:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99932 * 2 1 4 4 H 1.48499 * 109.47052 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.46994 * 119.99800 * 3 2 1 6 6 H 1.48498 * 109.46721 * 240.00152 * 3 2 1 7 7 C 1.37875 * 120.00140 * 180.27708 * 2 1 3 8 8 H 1.07994 * 120.00207 * 152.17643 * 7 2 1 9 9 C 1.50707 * 119.99980 * 332.17027 * 7 2 1 10 10 H 1.09003 * 109.46703 * 54.17435 * 9 7 2 11 11 N 1.46498 * 109.47297 * 174.17224 * 9 7 2 12 12 C 1.34767 * 120.00039 * 205.00196 * 11 9 7 13 13 O 1.21585 * 120.00229 * 0.02562 * 12 11 9 14 14 N 1.34778 * 119.99941 * 180.02562 * 12 11 9 15 15 C 1.46498 * 120.00083 * 180.02562 * 14 12 11 16 16 C 1.50706 * 109.47198 * 179.97438 * 15 14 12 17 17 C 1.35316 * 126.65825 * 89.70878 * 16 15 14 18 18 C 1.42294 * 103.91647 * 179.97438 * 17 16 15 19 19 C 1.48245 * 126.94147 * 180.12073 * 18 17 16 20 20 O 1.21406 * 119.99703 * 0.23109 * 19 18 17 21 21 O 1.34650 * 119.99882 * 180.22957 * 19 18 17 22 22 N 1.31017 * 106.11730 * 0.33387 * 18 17 16 23 23 O 1.20904 * 111.43114 * 359.78390 * 22 18 17 24 24 C 1.53002 * 109.47310 * 294.17834 * 9 7 2 25 25 F 1.39904 * 109.47165 * 56.80993 * 24 9 7 26 26 F 1.39898 * 109.47073 * 176.81188 * 24 9 7 27 27 F 1.39898 * 109.46934 * 296.81032 * 24 9 7 28 28 H 0.96997 * 120.00172 * 174.46880 * 1 2 3 29 29 H 0.97003 * 119.99743 * 25.00739 * 11 9 7 30 30 H 0.96998 * 119.99939 * 359.97438 * 14 12 11 31 31 H 1.08997 * 109.47234 * 299.99502 * 15 14 12 32 32 H 1.08997 * 109.47408 * 59.99684 * 15 14 12 33 33 H 1.07999 * 128.03717 * 0.02562 * 17 16 15 34 34 H 0.96699 * 116.99593 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0058 8 1 2.9908 -1.2460 -0.4426 9 6 1.3818 -2.4266 0.5976 10 1 0.4039 -2.5972 0.1471 11 7 2.2444 -3.5834 0.3447 12 6 1.7181 -4.8238 0.3194 13 8 0.5272 -4.9828 0.5060 14 7 2.5118 -5.8880 0.0872 15 6 1.9396 -7.2363 0.0592 16 6 3.0299 -8.2391 -0.2180 17 6 3.7983 -8.8712 0.6991 18 6 4.6542 -9.6970 -0.0822 19 6 5.7049 -10.6157 0.4172 20 8 5.9015 -10.7217 1.6105 21 8 6.4413 -11.3328 -0.4528 22 7 4.3291 -9.4778 -1.3324 23 8 3.4313 -8.6728 -1.4208 24 6 1.2209 -2.2304 2.1064 25 9 0.4571 -1.0836 2.3488 26 9 0.5769 -3.3444 2.6555 27 9 2.4818 -2.0839 2.6946 28 1 -0.4850 -0.8361 -0.0810 29 1 3.1945 -3.4565 0.1955 30 1 3.4618 -5.7611 -0.0620 31 1 1.4799 -7.4560 1.0227 32 1 1.1850 -7.2946 -0.7252 33 1 3.7683 -8.7726 1.7741 34 1 7.1148 -11.9179 -0.0798 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574242611.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:10 Heat of formation + Delta-G solvation = -229.095948 kcal Electronic energy + Delta-G solvation = -28902.309386 eV Core-core repulsion = 23809.253804 eV Total energy + Delta-G solvation = -5093.055582 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.076 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.71667 -48.24378 -48.20387 -46.44732 -41.28795 -41.03746 -37.42267 -37.13730 -36.22598 -35.30701 -34.60205 -33.15965 -30.17641 -27.61811 -26.92353 -26.44731 -24.16217 -23.67162 -22.05609 -22.01500 -20.32805 -19.57166 -19.18427 -19.15344 -19.10195 -18.94694 -18.62598 -17.95097 -17.71700 -16.95847 -16.77893 -16.34055 -15.80067 -15.65027 -15.33535 -15.16424 -15.13910 -14.77851 -14.68626 -14.62367 -14.57090 -14.45749 -14.41611 -14.34014 -13.71168 -13.21617 -12.98288 -12.89626 -12.82615 -12.49681 -12.28300 -11.91104 -11.87569 -11.53543 -11.43444 -10.87859 -10.47598 -10.39181 -9.92838 -8.83838 -6.54531 -0.36742 0.19410 1.37607 1.52021 1.58629 1.61331 1.64906 1.85031 1.87305 2.01458 2.32657 2.52843 2.74003 2.91347 3.20606 3.40312 3.49961 3.60489 3.65272 3.82869 3.90520 4.21311 4.47947 4.54551 4.65658 4.69951 5.22396 5.27075 5.34057 5.38152 5.94533 6.11192 6.34334 6.56954 6.78176 7.03186 7.19230 7.53548 8.50249 Molecular weight = 337.08amu Principal moments of inertia in cm(-1) A = 0.021096 B = 0.002481 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.940015 B =11282.842330 C =11476.360226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.010 3.990 3 Si 1.101 2.899 4 H -0.286 1.286 5 H -0.272 1.272 6 H -0.259 1.259 7 C -0.654 4.654 8 H 0.085 0.915 9 C 0.262 3.738 10 H 0.048 0.952 11 N -0.714 5.714 12 C 0.702 3.298 13 O -0.620 6.620 14 N -0.731 5.731 15 C 0.224 3.776 16 C -0.029 4.029 17 C -0.144 4.144 18 C -0.035 4.035 19 C 0.579 3.421 20 O -0.515 6.515 21 O -0.496 6.496 22 N -0.314 5.314 23 O 0.146 5.854 24 C 0.413 3.587 25 F -0.190 7.190 26 F -0.203 7.203 27 F -0.190 7.190 28 H 0.264 0.736 29 H 0.412 0.588 30 H 0.412 0.588 31 H 0.117 0.883 32 H 0.100 0.900 33 H 0.206 0.794 34 H 0.443 0.557 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.210 -17.550 -0.860 20.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.198 4.198 3 Si 0.921 3.079 4 H -0.211 1.211 5 H -0.197 1.197 6 H -0.183 1.183 7 C -0.689 4.689 8 H 0.103 0.897 9 C 0.153 3.847 10 H 0.066 0.934 11 N -0.368 5.368 12 C 0.402 3.598 13 O -0.500 6.500 14 N -0.390 5.390 15 C 0.100 3.900 16 C -0.092 4.092 17 C -0.167 4.167 18 C -0.191 4.191 19 C 0.420 3.580 20 O -0.402 6.402 21 O -0.310 6.310 22 N -0.009 5.009 23 O 0.061 5.939 24 C 0.357 3.643 25 F -0.171 7.171 26 F -0.185 7.185 27 F -0.172 7.172 28 H 0.074 0.926 29 H 0.249 0.751 30 H 0.249 0.751 31 H 0.135 0.865 32 H 0.119 0.881 33 H 0.223 0.777 34 H 0.307 0.693 Dipole moment (debyes) X Y Z Total from point charges 10.224 -16.469 -1.567 19.447 hybrid contribution 0.994 -1.822 1.216 2.405 sum 11.218 -18.291 -0.351 21.459 Atomic orbital electron populations 1.70867 1.08681 1.30945 1.39793 1.27187 0.95654 1.06155 0.90812 0.83182 0.74746 0.71488 0.78449 1.21144 1.19724 1.18336 1.21843 1.06493 0.93680 1.46889 0.89733 1.19141 0.94318 0.86627 0.84647 0.93406 1.44831 1.12572 1.03683 1.75713 1.16052 0.84990 0.81023 0.77782 1.90927 1.15427 1.85371 1.58229 1.44802 1.11828 1.04198 1.78130 1.19541 0.89619 0.75516 1.05338 1.24263 1.00637 1.01139 0.83176 1.22758 0.94274 0.96172 1.03463 1.22468 1.02216 1.03916 0.90458 1.19047 0.78635 0.77180 0.83099 1.90949 1.67331 1.64565 1.17367 1.84559 1.49361 1.55010 1.42114 1.74401 1.01504 1.04814 1.20179 1.84881 1.36472 1.41097 1.31411 1.23073 0.72768 0.72638 0.95814 1.93127 1.76471 1.51965 1.95570 1.93098 1.82560 1.54105 1.88761 1.93022 1.41771 1.95593 1.86790 0.92620 0.75116 0.75120 0.86494 0.88141 0.77659 0.69297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.66 12.35 21.45 0.26 -48.40 16 2 C 0.01 0.53 4.23 84.65 0.36 0.89 16 3 Si 1.10 45.03 29.99 68.60 2.06 47.09 16 4 H -0.29 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 6 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 7 C -0.65 -31.90 8.32 25.60 0.21 -31.69 16 8 H 0.08 3.87 7.86 -2.91 -0.02 3.85 16 9 C 0.26 12.24 2.00 44.25 0.09 12.33 16 10 H 0.05 2.57 6.46 -2.39 -0.02 2.56 16 11 N -0.71 -26.19 4.94 -461.41 -2.28 -28.48 16 12 C 0.70 24.03 8.17 179.06 1.46 25.50 16 13 O -0.62 -26.41 14.91 -3.99 -0.06 -26.47 16 14 N -0.73 -16.15 5.55 -482.31 -2.68 -18.82 16 15 C 0.22 3.84 6.23 85.64 0.53 4.38 16 16 C -0.03 -0.44 6.84 25.01 0.17 -0.26 16 17 C -0.14 -2.14 10.92 22.60 0.25 -1.89 16 18 C -0.04 -0.64 7.24 42.94 0.31 -0.33 16 19 C 0.58 10.13 8.36 70.48 0.59 10.72 16 20 O -0.51 -11.08 17.74 20.14 0.36 -10.72 16 21 O -0.50 -6.10 13.44 -55.59 -0.75 -6.84 16 22 N -0.31 -6.23 12.12 -49.52 -0.60 -6.83 16 23 O 0.15 2.58 11.18 71.93 0.80 3.38 16 24 C 0.41 19.75 2.82 71.98 0.20 19.95 16 25 F -0.19 -9.92 14.71 44.97 0.66 -9.26 16 26 F -0.20 -9.61 15.77 44.97 0.71 -8.90 16 27 F -0.19 -8.48 16.97 44.97 0.76 -7.72 16 28 H 0.26 15.14 7.25 -92.71 -0.67 14.47 16 29 H 0.41 12.55 8.54 -92.71 -0.79 11.76 16 30 H 0.41 6.92 8.48 -92.71 -0.79 6.14 16 31 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.10 1.74 8.14 -2.39 -0.02 1.73 16 33 H 0.21 2.34 8.06 -2.91 -0.02 2.32 16 34 H 0.44 0.67 9.11 -74.06 -0.67 0.00 16 Total: -1.00 -70.28 328.16 2.52 -67.76 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -0.90 Total: 14.64 kcal Atomic # 6 Polarization: 35.41 SS G_CDS: 4.18 Total: 39.59 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -5.29 Total: -102.53 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: 0.35 Total: -40.66 kcal Atomic # 9 Polarization: -28.02 SS G_CDS: 2.13 Total: -25.89 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.06 Total: 47.09 kcal Total: -70.28 2.52 -67.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574242611.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.339 kcal (2) G-P(sol) polarization free energy of solvation -70.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds