Wall clock time and date at job start Tue Mar 31 2020 20:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99746 * 2 1 4 4 H 1.48500 * 109.47358 * 264.90372 * 3 2 1 5 5 H 1.48497 * 109.47159 * 24.90738 * 3 2 1 6 6 H 1.48506 * 109.47186 * 144.90286 * 3 2 1 7 7 C 1.37881 * 120.00396 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99585 * 4.89348 * 7 2 1 9 9 C 1.50695 * 119.99988 * 184.89782 * 7 2 1 10 10 H 1.08994 * 109.47416 * 54.76039 * 9 7 2 11 11 N 1.46500 * 109.46835 * 294.75921 * 9 7 2 12 12 C 1.34783 * 119.99938 * 155.00262 * 11 9 7 13 13 O 1.21594 * 119.99640 * 0.02562 * 12 11 9 14 14 N 1.34777 * 120.00201 * 180.02562 * 12 11 9 15 15 C 1.46501 * 119.99957 * 180.27882 * 14 12 11 16 16 C 1.50703 * 109.46946 * 179.72413 * 15 14 12 17 17 C 1.35305 * 126.66171 * 89.70962 * 16 15 14 18 18 C 1.42300 * 103.91965 * 179.97438 * 17 16 15 19 19 C 1.48236 * 126.94384 * 180.11649 * 18 17 16 20 20 O 1.21411 * 120.00132 * 0.23530 * 19 18 17 21 21 O 1.34645 * 120.00281 * 180.23514 * 19 18 17 22 22 N 1.31020 * 106.11185 * 0.33503 * 18 17 16 23 23 O 1.20902 * 111.43070 * 359.78592 * 22 18 17 24 24 C 1.53002 * 109.47074 * 174.76502 * 9 7 2 25 25 F 1.39898 * 109.47492 * 185.01560 * 24 9 7 26 26 F 1.39903 * 109.46798 * 305.01186 * 24 9 7 27 27 F 1.39901 * 109.47487 * 65.00919 * 24 9 7 28 28 H 0.96992 * 120.00082 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00415 * 335.00090 * 11 9 7 30 30 H 0.97001 * 119.99562 * 359.97438 * 14 12 11 31 31 H 1.09000 * 109.46529 * 299.71957 * 15 14 12 32 32 H 1.08997 * 109.47363 * 59.71909 * 15 14 12 33 33 H 1.08001 * 128.03739 * 359.97438 * 17 16 15 34 34 H 0.96701 * 117.00551 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6043 1.9843 -1.3945 5 1 1.3968 2.6813 0.5896 6 1 3.4887 1.4738 0.8050 7 6 2.0046 -1.1940 -0.0005 8 1 1.4676 -2.1276 -0.0807 9 6 3.5074 -1.1964 0.1109 10 1 3.8068 -0.6408 0.9995 11 7 4.0862 -0.5651 -1.0777 12 6 5.3076 0.0010 -1.0130 13 8 5.9294 -0.0127 0.0319 14 7 5.8398 0.5823 -2.1063 15 6 7.1701 1.1922 -2.0374 16 6 7.5320 1.7614 -3.3851 17 6 7.2722 3.0125 -3.8299 18 6 7.8180 3.0289 -5.1440 19 6 7.8148 4.1652 -6.0959 20 8 7.3111 5.2229 -5.7771 21 8 8.3706 4.0244 -7.3142 22 7 8.3197 1.8352 -5.3442 23 8 8.1677 1.1244 -4.3781 24 6 4.0087 -2.6380 0.2178 25 9 5.3906 -2.6364 0.4358 26 9 3.3689 -3.2761 1.2858 27 9 3.7248 -3.3198 -0.9704 28 1 -0.4850 0.8400 -0.0004 29 1 3.5903 -0.5545 -1.9114 30 1 5.3439 0.5928 -2.9399 31 1 7.1657 1.9904 -1.2952 32 1 7.9022 0.4362 -1.7537 33 1 6.7679 3.8128 -3.3087 34 1 8.3441 4.7931 -7.9004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574242612.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:14 Heat of formation + Delta-G solvation = -202.477918 kcal Electronic energy + Delta-G solvation = -29111.010018 eV Core-core repulsion = 24019.108680 eV Total energy + Delta-G solvation = -5091.901338 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.076 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.09284 -46.60092 -46.58215 -45.65942 -40.56162 -39.63575 -36.72534 -35.84045 -34.75911 -34.45619 -32.70069 -32.13777 -29.24219 -26.66537 -26.13597 -25.04558 -23.35821 -21.68703 -21.25817 -20.53848 -18.86458 -18.47145 -18.35701 -18.20155 -17.55424 -17.30320 -16.99628 -16.87604 -16.45174 -16.09856 -15.76782 -15.23021 -14.61625 -14.58186 -14.10570 -13.91565 -13.71747 -13.48400 -13.45601 -13.04771 -13.03899 -12.84551 -12.78301 -12.76720 -12.69298 -12.22038 -12.07681 -11.76017 -11.49829 -11.18114 -11.10070 -10.71264 -10.32762 -10.25771 -9.91501 -9.77213 -9.13633 -9.05503 -8.45354 -6.55828 -4.70180 0.40958 0.95323 2.06525 2.32861 2.40413 2.96507 3.10486 3.17037 3.26018 3.46997 3.49624 3.89673 4.07378 4.14569 4.35722 4.43090 4.63720 4.88866 4.93461 5.03324 5.17906 5.25399 5.30733 5.37217 5.45135 5.79239 6.30074 6.39979 6.82117 7.02868 7.17475 7.23045 7.48756 7.85150 8.41763 8.47972 8.93758 8.98174 10.52168 Molecular weight = 337.08amu Principal moments of inertia in cm(-1) A = 0.015140 B = 0.003185 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.020370 B = 8789.554622 C = 9933.442148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.095 3.905 3 Si 0.883 3.117 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.255 1.255 7 C -0.537 4.537 8 H 0.096 0.904 9 C 0.221 3.779 10 H 0.093 0.907 11 N -0.730 5.730 12 C 0.695 3.305 13 O -0.582 6.582 14 N -0.755 5.755 15 C 0.222 3.778 16 C -0.038 4.038 17 C -0.155 4.155 18 C -0.022 4.022 19 C 0.573 3.427 20 O -0.491 6.491 21 O -0.498 6.498 22 N -0.299 5.299 23 O 0.146 5.854 24 C 0.441 3.559 25 F -0.192 7.192 26 F -0.184 7.184 27 F -0.191 7.191 28 H 0.275 0.725 29 H 0.398 0.602 30 H 0.398 0.602 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.190 0.810 34 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.745 6.100 -10.026 18.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.115 4.115 3 Si 0.710 3.290 4 H -0.199 1.199 5 H -0.216 1.216 6 H -0.179 1.179 7 C -0.575 4.575 8 H 0.114 0.886 9 C 0.118 3.882 10 H 0.111 0.889 11 N -0.386 5.386 12 C 0.396 3.604 13 O -0.460 6.460 14 N -0.414 5.414 15 C 0.096 3.904 16 C -0.101 4.101 17 C -0.178 4.178 18 C -0.178 4.178 19 C 0.414 3.586 20 O -0.376 6.376 21 O -0.310 6.310 22 N 0.006 4.994 23 O 0.062 5.938 24 C 0.385 3.615 25 F -0.174 7.174 26 F -0.165 7.165 27 F -0.173 7.173 28 H 0.085 0.915 29 H 0.234 0.766 30 H 0.232 0.768 31 H 0.124 0.876 32 H 0.116 0.884 33 H 0.207 0.793 34 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 14.645 5.637 -9.790 18.496 hybrid contribution -0.449 1.723 -0.901 1.996 sum 14.195 7.361 -10.691 19.235 Atomic orbital electron populations 1.69868 1.06462 1.28396 1.44603 1.24954 0.94798 0.99429 0.92287 0.86753 0.80567 0.82315 0.79367 1.19860 1.21572 1.17916 1.20837 0.85931 0.96542 1.54148 0.88639 1.20223 0.95663 0.84066 0.88297 0.88905 1.46998 1.16242 1.59414 1.15969 1.16342 0.82230 0.78439 0.83432 1.90920 1.61862 1.64521 1.28665 1.45225 1.18818 1.63727 1.13628 1.19459 0.85478 0.99274 0.86163 1.24561 0.99400 0.92273 0.93878 1.22547 1.03345 0.98803 0.93062 1.22215 1.06738 0.93092 0.95772 1.19105 0.74487 0.84972 0.80052 1.90959 1.42253 1.27256 1.77135 1.84591 1.73484 1.47242 1.25676 1.74392 1.15275 1.02907 1.06852 1.84888 1.55339 1.36367 1.17178 1.21516 0.74515 0.92397 0.73048 1.93149 1.32451 1.97155 1.94625 1.93113 1.81948 1.84222 1.57259 1.93080 1.93388 1.82785 1.48005 0.91475 0.76610 0.76768 0.87618 0.88447 0.79278 0.71848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.13 13.96 55.43 0.77 -22.36 16 2 C 0.10 2.39 5.47 -17.82 -0.10 2.29 16 3 Si 0.88 19.39 25.78 -169.99 -4.38 15.01 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.26 -5.77 6.57 56.52 0.37 -5.40 16 7 C -0.54 -13.26 8.65 -34.44 -0.30 -13.55 16 8 H 0.10 2.59 7.95 -52.49 -0.42 2.17 16 9 C 0.22 4.85 1.42 -69.08 -0.10 4.75 16 10 H 0.09 2.18 6.52 -51.93 -0.34 1.84 16 11 N -0.73 -13.85 2.89 -59.81 -0.17 -14.02 16 12 C 0.69 12.42 7.77 -86.91 -0.67 11.75 16 13 O -0.58 -12.18 14.91 5.28 0.08 -12.11 16 14 N -0.75 -9.79 5.55 -66.41 -0.37 -10.16 16 15 C 0.22 2.25 6.23 -5.19 -0.03 2.22 16 16 C -0.04 -0.35 6.84 -35.35 -0.24 -0.59 16 17 C -0.15 -1.44 10.92 -39.07 -0.43 -1.86 16 18 C -0.02 -0.24 7.24 -82.54 -0.60 -0.83 16 19 C 0.57 5.78 8.36 34.84 0.29 6.07 16 20 O -0.49 -5.92 17.74 -19.20 -0.34 -6.26 16 21 O -0.50 -3.73 13.44 -40.34 -0.54 -4.27 16 22 N -0.30 -3.35 12.12 33.29 0.40 -2.95 16 23 O 0.15 1.49 11.18 17.27 0.19 1.68 16 24 C 0.44 9.38 2.79 37.16 0.10 9.48 16 25 F -0.19 -4.05 15.83 2.25 0.04 -4.02 16 26 F -0.18 -4.00 16.86 2.25 0.04 -3.96 16 27 F -0.19 -3.95 16.97 2.25 0.04 -3.91 16 28 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.40 6.85 8.59 -40.82 -0.35 6.50 16 30 H 0.40 4.36 8.48 -40.82 -0.35 4.02 16 31 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.19 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.42 0.91 9.11 45.56 0.42 1.32 16 LS Contribution 327.01 15.07 4.93 4.93 Total: -1.00 -31.87 327.01 -2.86 -34.73 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -1.47 Total: 7.94 kcal Atomic # 6 Polarization: 21.79 SS G_CDS: -2.07 Total: 19.72 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: 0.64 Total: -49.48 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.61 Total: -20.96 kcal Atomic # 9 Polarization: -12.00 SS G_CDS: 0.11 Total: -11.89 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.38 Total: 15.01 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.87 -2.86 -34.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574242612.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.749 kcal (2) G-P(sol) polarization free energy of solvation -31.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds