Wall clock time and date at job start Tue Mar 31 2020 20:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99746 * 2 1 4 4 H 1.48500 * 109.47358 * 264.90372 * 3 2 1 5 5 H 1.48497 * 109.47159 * 24.90738 * 3 2 1 6 6 H 1.48506 * 109.47186 * 144.90286 * 3 2 1 7 7 C 1.37881 * 120.00396 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99585 * 4.89348 * 7 2 1 9 9 C 1.50695 * 119.99988 * 184.89782 * 7 2 1 10 10 H 1.08994 * 109.47416 * 54.76039 * 9 7 2 11 11 N 1.46500 * 109.46835 * 294.75921 * 9 7 2 12 12 C 1.34783 * 119.99938 * 155.00262 * 11 9 7 13 13 O 1.21594 * 119.99640 * 0.02562 * 12 11 9 14 14 N 1.34777 * 120.00201 * 180.02562 * 12 11 9 15 15 C 1.46501 * 119.99957 * 180.27882 * 14 12 11 16 16 C 1.50703 * 109.46946 * 179.72413 * 15 14 12 17 17 C 1.35305 * 126.66171 * 89.70962 * 16 15 14 18 18 C 1.42300 * 103.91965 * 179.97438 * 17 16 15 19 19 C 1.48236 * 126.94384 * 180.11649 * 18 17 16 20 20 O 1.21411 * 120.00132 * 0.23530 * 19 18 17 21 21 O 1.34645 * 120.00281 * 180.23514 * 19 18 17 22 22 N 1.31020 * 106.11185 * 0.33503 * 18 17 16 23 23 O 1.20902 * 111.43070 * 359.78592 * 22 18 17 24 24 C 1.53002 * 109.47074 * 174.76502 * 9 7 2 25 25 F 1.39898 * 109.47492 * 185.01560 * 24 9 7 26 26 F 1.39903 * 109.46798 * 305.01186 * 24 9 7 27 27 F 1.39901 * 109.47487 * 65.00919 * 24 9 7 28 28 H 0.96992 * 120.00082 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00415 * 335.00090 * 11 9 7 30 30 H 0.97001 * 119.99562 * 359.97438 * 14 12 11 31 31 H 1.09000 * 109.46529 * 299.71957 * 15 14 12 32 32 H 1.08997 * 109.47363 * 59.71909 * 15 14 12 33 33 H 1.08001 * 128.03739 * 359.97438 * 17 16 15 34 34 H 0.96701 * 117.00551 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6043 1.9843 -1.3945 5 1 1.3968 2.6813 0.5896 6 1 3.4887 1.4738 0.8050 7 6 2.0046 -1.1940 -0.0005 8 1 1.4676 -2.1276 -0.0807 9 6 3.5074 -1.1964 0.1109 10 1 3.8068 -0.6408 0.9995 11 7 4.0862 -0.5651 -1.0777 12 6 5.3076 0.0010 -1.0130 13 8 5.9294 -0.0127 0.0319 14 7 5.8398 0.5823 -2.1063 15 6 7.1701 1.1922 -2.0374 16 6 7.5320 1.7614 -3.3851 17 6 7.2722 3.0125 -3.8299 18 6 7.8180 3.0289 -5.1440 19 6 7.8148 4.1652 -6.0959 20 8 7.3111 5.2229 -5.7771 21 8 8.3706 4.0244 -7.3142 22 7 8.3197 1.8352 -5.3442 23 8 8.1677 1.1244 -4.3781 24 6 4.0087 -2.6380 0.2178 25 9 5.3906 -2.6364 0.4358 26 9 3.3689 -3.2761 1.2858 27 9 3.7248 -3.3198 -0.9704 28 1 -0.4850 0.8400 -0.0004 29 1 3.5903 -0.5545 -1.9114 30 1 5.3439 0.5928 -2.9399 31 1 7.1657 1.9904 -1.2952 32 1 7.9022 0.4362 -1.7537 33 1 6.7679 3.8128 -3.3087 34 1 8.3441 4.7931 -7.9004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574242612.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:13 Heat of formation + Delta-G solvation = -227.152458 kcal Electronic energy + Delta-G solvation = -29112.079987 eV Core-core repulsion = 24019.108680 eV Total energy + Delta-G solvation = -5092.971306 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.076 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.81961 -48.32486 -48.30686 -46.44273 -41.28783 -41.04318 -37.42204 -37.13447 -36.15938 -35.30015 -34.43807 -33.23962 -30.81139 -27.66000 -26.93819 -26.88692 -24.13859 -23.29088 -22.04120 -21.97389 -20.29886 -19.68891 -19.24005 -19.18275 -19.12659 -18.70603 -18.35844 -18.24323 -17.72924 -17.15400 -16.80369 -16.42682 -16.23701 -15.60690 -15.28074 -15.22333 -15.11699 -14.85836 -14.77583 -14.70168 -14.60303 -14.50694 -14.45822 -14.39008 -13.79730 -13.48928 -12.90705 -12.89574 -12.83471 -12.48596 -12.28352 -12.03242 -11.87111 -11.81801 -11.53951 -10.99931 -10.83728 -10.40378 -9.90849 -8.49167 -6.68504 -0.36317 0.19905 1.29072 1.38708 1.40371 1.50087 1.54688 1.61881 1.83458 1.98652 2.20933 2.31248 2.74108 2.87710 3.19940 3.32401 3.41136 3.43692 3.60976 3.72575 3.90142 4.21594 4.48927 4.52206 4.60766 4.69855 4.99895 5.22499 5.30460 5.43669 5.83789 6.03769 6.46981 6.57268 6.78449 7.02898 7.05444 7.54219 8.62774 Molecular weight = 337.08amu Principal moments of inertia in cm(-1) A = 0.015140 B = 0.003185 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.020370 B = 8789.554622 C = 9933.442148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.057 3.943 3 Si 0.940 3.060 4 H -0.244 1.244 5 H -0.295 1.295 6 H -0.263 1.263 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.233 3.767 10 H 0.081 0.919 11 N -0.731 5.731 12 C 0.696 3.304 13 O -0.612 6.612 14 N -0.739 5.739 15 C 0.222 3.778 16 C -0.029 4.029 17 C -0.147 4.147 18 C -0.035 4.035 19 C 0.579 3.421 20 O -0.515 6.515 21 O -0.496 6.496 22 N -0.314 5.314 23 O 0.147 5.853 24 C 0.443 3.557 25 F -0.188 7.188 26 F -0.189 7.189 27 F -0.187 7.187 28 H 0.278 0.722 29 H 0.409 0.591 30 H 0.411 0.589 31 H 0.119 0.881 32 H 0.104 0.896 33 H 0.205 0.795 34 H 0.443 0.557 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.356 7.340 -11.161 20.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.149 4.149 3 Si 0.764 3.236 4 H -0.168 1.168 5 H -0.222 1.222 6 H -0.187 1.187 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.127 3.873 10 H 0.099 0.901 11 N -0.388 5.388 12 C 0.397 3.603 13 O -0.491 6.491 14 N -0.397 5.397 15 C 0.098 3.902 16 C -0.092 4.092 17 C -0.170 4.170 18 C -0.191 4.191 19 C 0.420 3.580 20 O -0.403 6.403 21 O -0.310 6.310 22 N -0.009 5.009 23 O 0.063 5.937 24 C 0.388 3.612 25 F -0.170 7.170 26 F -0.170 7.170 27 F -0.168 7.168 28 H 0.088 0.912 29 H 0.246 0.754 30 H 0.247 0.753 31 H 0.136 0.864 32 H 0.122 0.878 33 H 0.222 0.778 34 H 0.307 0.693 Dipole moment (debyes) X Y Z Total from point charges 16.288 6.896 -11.022 20.841 hybrid contribution -0.859 1.270 -0.606 1.649 sum 15.429 8.165 -11.629 20.975 Atomic orbital electron populations 1.69963 1.08025 1.29357 1.46687 1.25585 0.95226 1.02314 0.91775 0.85869 0.78671 0.78422 0.80636 1.16810 1.22176 1.18747 1.20758 0.87377 0.95349 1.54386 0.91984 1.19764 0.94057 0.84546 0.88892 0.90122 1.46410 1.17196 1.59801 1.15376 1.16267 0.81541 0.78436 0.84079 1.90910 1.62408 1.65611 1.30201 1.45031 1.19730 1.62303 1.12684 1.19590 0.83907 0.99782 0.86888 1.24310 0.99485 0.92086 0.93347 1.22762 1.02608 0.99072 0.92532 1.22458 1.06950 0.93138 0.96529 1.19053 0.74027 0.84410 0.80492 1.90950 1.43534 1.28042 1.77753 1.84555 1.72631 1.48717 1.25106 1.74394 1.15862 1.03336 1.07277 1.84876 1.55327 1.36341 1.17198 1.21410 0.74602 0.92159 0.73071 1.93156 1.32068 1.97129 1.94616 1.93103 1.82096 1.84288 1.57537 1.93086 1.93385 1.82658 1.47707 0.91207 0.75396 0.75305 0.86369 0.87765 0.77787 0.69293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.28 13.96 21.45 0.30 -48.98 16 2 C 0.06 2.85 5.47 84.66 0.46 3.31 16 3 Si 0.94 39.11 25.78 68.60 1.77 40.88 16 4 H -0.24 -8.96 7.11 99.48 0.71 -8.25 16 5 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.26 -11.27 6.57 99.48 0.65 -10.61 16 7 C -0.54 -26.92 8.65 25.60 0.22 -26.70 16 8 H 0.06 3.46 7.95 -2.91 -0.02 3.44 16 9 C 0.23 10.06 1.42 44.24 0.06 10.12 16 10 H 0.08 3.73 6.52 -2.39 -0.02 3.72 16 11 N -0.73 -26.35 2.89 -461.41 -1.33 -27.68 16 12 C 0.70 23.13 7.77 179.05 1.39 24.52 16 13 O -0.61 -24.27 14.91 -4.01 -0.06 -24.33 16 14 N -0.74 -16.79 5.55 -482.28 -2.68 -19.47 16 15 C 0.22 3.80 6.23 85.63 0.53 4.33 16 16 C -0.03 -0.45 6.84 25.01 0.17 -0.28 16 17 C -0.15 -2.31 10.92 22.60 0.25 -2.07 16 18 C -0.04 -0.67 7.24 42.94 0.31 -0.36 16 19 C 0.58 10.59 8.36 70.48 0.59 11.18 16 20 O -0.52 -11.56 17.74 20.12 0.36 -11.20 16 21 O -0.50 -6.41 13.44 -55.54 -0.75 -7.15 16 22 N -0.31 -6.39 12.12 -49.52 -0.60 -6.99 16 23 O 0.15 2.65 11.18 71.96 0.80 3.46 16 24 C 0.44 18.59 2.79 71.98 0.20 18.79 16 25 F -0.19 -7.70 15.83 44.97 0.71 -6.99 16 26 F -0.19 -8.20 16.86 44.97 0.76 -7.44 16 27 F -0.19 -7.58 16.97 44.97 0.76 -6.81 16 28 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 29 H 0.41 13.17 8.59 -92.71 -0.80 12.38 16 30 H 0.41 7.54 8.48 -92.71 -0.79 6.76 16 31 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.21 2.54 8.06 -2.91 -0.02 2.52 16 34 H 0.44 0.94 9.11 -74.06 -0.67 0.27 16 Total: -1.00 -67.76 327.01 3.17 -64.58 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -1.06 Total: 15.29 kcal Atomic # 6 Polarization: 38.65 SS G_CDS: 4.19 Total: 42.84 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -4.31 Total: -103.12 kcal Atomic # 8 Polarization: -39.58 SS G_CDS: 0.36 Total: -39.23 kcal Atomic # 9 Polarization: -23.48 SS G_CDS: 2.23 Total: -21.24 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 1.77 Total: 40.88 kcal Total: -67.76 3.17 -64.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574242612.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.570 kcal (2) G-P(sol) polarization free energy of solvation -67.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds