Wall clock time and date at job start Tue Mar 31 2020 20:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99792 * 2 1 4 4 H 1.48504 * 109.47079 * 269.99704 * 3 2 1 5 5 H 1.48490 * 109.47443 * 29.99915 * 3 2 1 6 6 H 1.48507 * 109.47012 * 150.00187 * 3 2 1 7 7 C 1.37878 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99955 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00018 * 0.27384 * 7 2 1 10 10 N 1.46506 * 109.46812 * 179.72199 * 9 7 2 11 11 N 1.39901 * 125.73879 * 94.55871 * 10 9 7 12 12 C 1.30303 * 109.20439 * 180.02562 * 11 10 9 13 13 C 1.41472 * 108.17468 * 359.97438 * 12 11 10 14 14 C 1.46745 * 126.51613 * 180.02562 * 13 12 11 15 15 O 1.21595 * 120.00047 * 179.97438 * 14 13 12 16 16 O 1.34831 * 119.99771 * 359.97438 * 14 13 12 17 17 C 1.34764 * 125.74280 * 274.24477 * 10 9 7 18 18 N 1.38482 * 126.43712 * 0.02562 * 17 10 9 19 19 C 1.34777 * 119.99511 * 78.06321 * 18 17 10 20 20 O 1.21273 * 120.00110 * 4.53431 * 19 18 17 21 21 C 1.50699 * 119.99637 * 184.53116 * 19 18 17 22 22 O 1.42903 * 109.47014 * 180.02562 * 21 19 18 23 23 C 1.42904 * 113.99958 * 179.97438 * 22 21 19 24 24 F 1.39901 * 109.46648 * 59.99920 * 23 22 21 25 25 F 1.39897 * 109.46870 * 179.97438 * 23 22 21 26 26 F 1.39893 * 109.47137 * 300.00028 * 23 22 21 27 27 H 0.96993 * 119.99954 * 0.02562 * 1 2 3 28 28 H 1.08992 * 109.47262 * 299.72171 * 9 7 2 29 29 H 1.09002 * 109.47256 * 59.72705 * 9 7 2 30 30 H 1.08000 * 125.91344 * 179.97438 * 12 11 10 31 31 H 0.96703 * 116.99863 * 179.97438 * 16 14 13 32 32 H 0.96998 * 119.99900 * 258.06286 * 18 17 10 33 33 H 1.09000 * 109.47374 * 300.00122 * 21 19 18 34 34 H 1.08993 * 109.47102 * 60.00313 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 -0.0051 10 7 2.2031 -3.6127 -0.0100 11 7 2.6656 -4.2973 1.1189 12 6 3.5002 -5.2256 0.7452 13 6 3.6117 -5.1773 -0.6643 14 6 4.4447 -6.0454 -1.5046 15 8 4.4501 -5.8994 -2.7117 16 8 5.2039 -7.0048 -0.9381 17 6 2.7762 -4.1536 -1.1033 18 7 2.5752 -3.7620 -2.4163 19 6 3.1899 -2.6612 -2.8927 20 8 3.9821 -2.0605 -2.1982 21 6 2.8927 -2.1769 -4.2884 22 8 3.6620 -1.0035 -4.5594 23 6 3.4538 -0.4605 -5.8647 24 9 2.1066 -0.1152 -6.0166 25 9 4.2483 0.6794 -6.0277 26 9 3.8022 -1.4139 -6.8274 27 1 -0.4850 0.8400 -0.0004 28 1 0.6245 -2.5608 0.8846 29 1 0.6244 -2.5531 -0.8954 30 1 4.0173 -5.9129 1.3984 31 1 5.7355 -7.5520 -1.5324 32 1 1.9922 -4.2800 -2.9930 33 1 3.1525 -2.9550 -5.0061 34 1 1.8314 -1.9437 -4.3738 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574242633.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:29 Heat of formation + Delta-G solvation = -249.673903 kcal Electronic energy + Delta-G solvation = -29952.820947 eV Core-core repulsion = 24858.873038 eV Total energy + Delta-G solvation = -5093.947909 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.076 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.27552 -48.01306 -47.96050 -41.30512 -39.58526 -39.26618 -37.72759 -35.76012 -34.66055 -33.86355 -31.82257 -30.06256 -28.43996 -27.45065 -25.13389 -24.08124 -22.83557 -21.73257 -20.65627 -19.80162 -19.47911 -19.08080 -19.01409 -17.74356 -17.53766 -17.12007 -16.57144 -16.12575 -15.99213 -15.32275 -15.21056 -14.82275 -14.73469 -14.64542 -14.38516 -14.28139 -14.13856 -14.10509 -13.97184 -13.87178 -13.65936 -13.16302 -13.02246 -12.73428 -12.34386 -11.88366 -11.34187 -11.17785 -11.09655 -11.03460 -10.82399 -10.33529 -10.11333 -10.01665 -9.80836 -9.47273 -8.86083 -8.69351 -8.28752 -6.33610 -4.39581 1.42171 1.72374 2.41633 2.59795 2.68918 2.94719 3.24537 3.30068 3.36165 3.38855 3.47182 3.64891 3.95658 4.03227 4.30315 4.50194 4.73690 4.87718 5.00046 5.11645 5.36211 5.57565 5.75511 6.07825 6.17626 6.59315 6.68663 6.72654 6.94045 7.26164 7.42729 7.68380 7.73091 8.05156 8.22618 8.25984 8.71053 9.28793 10.74642 Molecular weight = 337.08amu Principal moments of inertia in cm(-1) A = 0.008230 B = 0.005811 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3401.253841 B = 4816.970095 C = 7534.058428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.070 3.930 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.534 4.534 8 H 0.076 0.924 9 C 0.248 3.752 10 N -0.299 5.299 11 N -0.277 5.277 12 C 0.089 3.911 13 C -0.302 4.302 14 C 0.567 3.433 15 O -0.536 6.536 16 O -0.516 6.516 17 C 0.384 3.616 18 N -0.651 5.651 19 C 0.535 3.465 20 O -0.466 6.466 21 C 0.044 3.956 22 O -0.344 6.344 23 C 0.597 3.403 24 F -0.173 7.173 25 F -0.138 7.138 26 F -0.177 7.177 27 H 0.268 0.732 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.192 0.808 31 H 0.407 0.593 32 H 0.418 0.582 33 H 0.107 0.893 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.740 -9.284 -10.573 14.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.134 4.134 3 Si 0.733 3.267 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.572 4.572 8 H 0.094 0.906 9 C 0.131 3.869 10 N -0.077 5.077 11 N -0.099 5.099 12 C -0.097 4.097 13 C -0.318 4.318 14 C 0.413 3.587 15 O -0.427 6.427 16 O -0.327 6.327 17 C 0.154 3.846 18 N -0.307 5.307 19 C 0.319 3.681 20 O -0.333 6.333 21 C -0.034 4.034 22 O -0.266 6.266 23 C 0.505 3.495 24 F -0.155 7.155 25 F -0.120 7.120 26 F -0.159 7.159 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.209 0.791 31 H 0.264 0.736 32 H 0.257 0.743 33 H 0.125 0.875 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.341 -7.568 -9.006 12.229 hybrid contribution 0.630 0.042 -1.676 1.791 sum 3.970 -7.526 -10.682 13.657 Atomic orbital electron populations 1.69913 1.06019 1.27850 1.49386 1.24865 0.94915 0.99485 0.94135 0.86330 0.79847 0.81844 0.78689 1.20084 1.20980 1.19458 1.21323 0.94358 0.88714 1.52789 0.90628 1.19997 0.86028 0.80525 1.00324 1.50031 1.31104 1.24632 1.01957 1.77283 1.16222 1.08636 1.07729 1.23871 0.96339 0.96692 0.92798 1.18790 1.11551 1.07442 0.94018 1.19521 0.76408 0.77277 0.85465 1.90839 1.65672 1.70357 1.15828 1.84584 1.56823 1.45874 1.45399 1.17438 0.93679 0.92007 0.81491 1.41919 1.51277 1.29163 1.08333 1.19570 0.81319 0.79781 0.87470 1.90848 1.31252 1.53495 1.57732 1.22422 0.97507 0.86725 0.96765 1.88426 1.66075 1.44487 1.27616 1.19483 0.74339 0.76399 0.79257 1.93281 1.34379 1.92379 1.95477 1.93278 1.74273 1.49659 1.94767 1.93256 1.92089 1.65015 1.65521 0.92215 0.91819 0.93024 0.79114 0.73580 0.74321 0.87479 0.87171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.48 13.29 55.43 0.74 -23.74 16 2 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 3 Si 0.91 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.53 -14.40 8.87 -34.44 -0.31 -14.70 16 8 H 0.08 2.21 7.12 -52.48 -0.37 1.84 16 9 C 0.25 5.94 6.08 -5.19 -0.03 5.91 16 10 N -0.30 -6.40 3.58 -61.12 -0.22 -6.62 16 11 N -0.28 -5.63 12.47 30.88 0.39 -5.24 16 12 C 0.09 1.49 11.86 -16.97 -0.20 1.29 16 13 C -0.30 -5.27 6.15 -104.86 -0.64 -5.92 16 14 C 0.57 8.79 8.31 34.17 0.28 9.07 16 15 O -0.54 -9.09 17.08 -19.34 -0.33 -9.42 16 16 O -0.52 -5.96 13.28 -40.85 -0.54 -6.50 16 17 C 0.38 7.31 6.48 -153.43 -0.99 6.32 16 18 N -0.65 -10.63 4.52 -11.08 -0.05 -10.68 16 19 C 0.53 9.69 7.86 -10.99 -0.09 9.60 16 20 O -0.47 -10.84 15.25 -14.35 -0.22 -11.06 16 21 C 0.04 0.60 6.14 36.01 0.22 0.82 16 22 O -0.34 -5.50 10.11 -55.14 -0.56 -6.06 16 23 C 0.60 7.87 3.75 101.05 0.38 8.25 16 24 F -0.17 -2.22 16.86 2.25 0.04 -2.18 16 25 F -0.14 -1.90 17.53 2.25 0.04 -1.86 16 26 F -0.18 -2.03 16.86 2.25 0.04 -1.99 16 27 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.06 1.61 8.14 -51.93 -0.42 1.19 16 29 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.19 2.40 8.06 -52.49 -0.42 1.98 16 31 H 0.41 2.69 9.11 45.56 0.42 3.11 16 32 H 0.42 5.00 8.82 -40.82 -0.36 4.64 16 33 H 0.11 1.04 7.73 -51.93 -0.40 0.64 16 34 H 0.11 1.23 7.73 -51.93 -0.40 0.83 16 LS Contribution 335.81 15.07 5.06 5.06 Total: -1.00 -34.44 335.81 -3.64 -38.08 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -1.52 Total: 2.86 kcal Atomic # 6 Polarization: 23.90 SS G_CDS: -1.48 Total: 22.43 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: 0.85 Total: -46.29 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -1.65 Total: -33.04 kcal Atomic # 9 Polarization: -6.15 SS G_CDS: 0.12 Total: -6.03 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.44 -3.64 -38.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574242633.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -211.594 kcal (2) G-P(sol) polarization free energy of solvation -34.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -246.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -249.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds