Wall clock time and date at job start Tue Mar 31 2020 20:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99792 * 2 1 4 4 H 1.48504 * 109.47079 * 269.99704 * 3 2 1 5 5 H 1.48490 * 109.47443 * 29.99915 * 3 2 1 6 6 H 1.48507 * 109.47012 * 150.00187 * 3 2 1 7 7 C 1.37878 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99955 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00018 * 0.27384 * 7 2 1 10 10 N 1.46506 * 109.46812 * 179.72199 * 9 7 2 11 11 N 1.39901 * 125.73879 * 94.55871 * 10 9 7 12 12 C 1.30303 * 109.20439 * 180.02562 * 11 10 9 13 13 C 1.41472 * 108.17468 * 359.97438 * 12 11 10 14 14 C 1.46745 * 126.51613 * 180.02562 * 13 12 11 15 15 O 1.21595 * 120.00047 * 179.97438 * 14 13 12 16 16 O 1.34831 * 119.99771 * 359.97438 * 14 13 12 17 17 C 1.34764 * 125.74280 * 274.24477 * 10 9 7 18 18 N 1.38482 * 126.43712 * 0.02562 * 17 10 9 19 19 C 1.34777 * 119.99511 * 78.06321 * 18 17 10 20 20 O 1.21273 * 120.00110 * 4.53431 * 19 18 17 21 21 C 1.50699 * 119.99637 * 184.53116 * 19 18 17 22 22 O 1.42903 * 109.47014 * 180.02562 * 21 19 18 23 23 C 1.42904 * 113.99958 * 179.97438 * 22 21 19 24 24 F 1.39901 * 109.46648 * 59.99920 * 23 22 21 25 25 F 1.39897 * 109.46870 * 179.97438 * 23 22 21 26 26 F 1.39893 * 109.47137 * 300.00028 * 23 22 21 27 27 H 0.96993 * 119.99954 * 0.02562 * 1 2 3 28 28 H 1.08992 * 109.47262 * 299.72171 * 9 7 2 29 29 H 1.09002 * 109.47256 * 59.72705 * 9 7 2 30 30 H 1.08000 * 125.91344 * 179.97438 * 12 11 10 31 31 H 0.96703 * 116.99863 * 179.97438 * 16 14 13 32 32 H 0.96998 * 119.99900 * 258.06286 * 18 17 10 33 33 H 1.09000 * 109.47374 * 300.00122 * 21 19 18 34 34 H 1.08993 * 109.47102 * 60.00313 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 -0.0051 10 7 2.2031 -3.6127 -0.0100 11 7 2.6656 -4.2973 1.1189 12 6 3.5002 -5.2256 0.7452 13 6 3.6117 -5.1773 -0.6643 14 6 4.4447 -6.0454 -1.5046 15 8 4.4501 -5.8994 -2.7117 16 8 5.2039 -7.0048 -0.9381 17 6 2.7762 -4.1536 -1.1033 18 7 2.5752 -3.7620 -2.4163 19 6 3.1899 -2.6612 -2.8927 20 8 3.9821 -2.0605 -2.1982 21 6 2.8927 -2.1769 -4.2884 22 8 3.6620 -1.0035 -4.5594 23 6 3.4538 -0.4605 -5.8647 24 9 2.1066 -0.1152 -6.0166 25 9 4.2483 0.6794 -6.0277 26 9 3.8022 -1.4139 -6.8274 27 1 -0.4850 0.8400 -0.0004 28 1 0.6245 -2.5608 0.8846 29 1 0.6244 -2.5531 -0.8954 30 1 4.0173 -5.9129 1.3984 31 1 5.7355 -7.5520 -1.5324 32 1 1.9922 -4.2800 -2.9930 33 1 3.1525 -2.9550 -5.0061 34 1 1.8314 -1.9437 -4.3738 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574242633.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:28 Heat of formation + Delta-G solvation = -275.292747 kcal Electronic energy + Delta-G solvation = -29953.931864 eV Core-core repulsion = 24858.873038 eV Total energy + Delta-G solvation = -5095.058826 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.076 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.29182 -49.04546 -48.95281 -42.72937 -40.90076 -40.49022 -38.94727 -36.88476 -36.11581 -35.74534 -33.59615 -31.39192 -29.75919 -29.18103 -26.25995 -25.71323 -24.33606 -23.08240 -22.01032 -21.17704 -20.60599 -20.11669 -20.09549 -19.12241 -18.86557 -18.72970 -18.15327 -17.40582 -17.20155 -16.75328 -16.52917 -16.30853 -15.89216 -15.71648 -15.66012 -15.40246 -15.35373 -15.30771 -15.16538 -15.09219 -15.06451 -14.54702 -14.30634 -14.17253 -13.90887 -13.73222 -13.09469 -12.82902 -12.41148 -12.39807 -12.34443 -12.15039 -11.89348 -11.45589 -11.33915 -10.90977 -10.77425 -10.42198 -9.77623 -8.40450 -6.51084 0.09173 0.57193 1.06218 1.20980 1.29926 1.32623 1.39817 1.44463 1.73341 2.18772 2.21694 2.29686 2.42373 2.87781 2.93071 3.02651 3.31660 3.70335 3.78854 3.89689 4.09239 4.20065 4.64579 4.71758 4.83474 4.89245 4.96619 5.49227 5.52658 5.69928 5.71964 5.87137 6.08732 6.55485 6.64433 6.92498 7.17434 7.19284 8.67344 Molecular weight = 337.08amu Principal moments of inertia in cm(-1) A = 0.008230 B = 0.005811 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3401.253841 B = 4816.970095 C = 7534.058428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.035 3.965 3 Si 0.950 3.050 4 H -0.274 1.274 5 H -0.268 1.268 6 H -0.282 1.282 7 C -0.538 4.538 8 H 0.047 0.953 9 C 0.266 3.734 10 N -0.325 5.325 11 N -0.314 5.314 12 C 0.107 3.893 13 C -0.306 4.306 14 C 0.575 3.425 15 O -0.551 6.551 16 O -0.500 6.500 17 C 0.372 3.628 18 N -0.640 5.640 19 C 0.528 3.472 20 O -0.528 6.528 21 C 0.046 3.954 22 O -0.377 6.377 23 C 0.606 3.394 24 F -0.170 7.170 25 F -0.144 7.144 26 F -0.163 7.163 27 H 0.273 0.727 28 H 0.043 0.957 29 H 0.053 0.947 30 H 0.234 0.766 31 H 0.432 0.568 32 H 0.438 0.562 33 H 0.150 0.850 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.192 -10.615 -11.710 16.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.167 4.167 3 Si 0.776 3.224 4 H -0.200 1.200 5 H -0.192 1.192 6 H -0.208 1.208 7 C -0.577 4.577 8 H 0.065 0.935 9 C 0.148 3.852 10 N -0.104 5.104 11 N -0.136 5.136 12 C -0.079 4.079 13 C -0.322 4.322 14 C 0.421 3.579 15 O -0.444 6.444 16 O -0.314 6.314 17 C 0.144 3.856 18 N -0.297 5.297 19 C 0.314 3.686 20 O -0.400 6.400 21 C -0.031 4.031 22 O -0.300 6.300 23 C 0.515 3.485 24 F -0.152 7.152 25 F -0.125 7.125 26 F -0.146 7.146 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.251 0.749 31 H 0.293 0.707 32 H 0.280 0.720 33 H 0.168 0.832 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.776 -8.961 -10.178 14.077 hybrid contribution 0.589 0.282 -1.329 1.481 sum 4.366 -8.679 -11.506 15.059 Atomic orbital electron populations 1.69948 1.06565 1.28635 1.49804 1.25406 0.95609 1.01636 0.94023 0.85665 0.78514 0.79661 0.78569 1.19984 1.19240 1.20773 1.21299 0.93067 0.90555 1.52746 0.93495 1.19459 0.86028 0.80503 0.99210 1.49711 1.32355 1.25196 1.03134 1.77225 1.18059 1.10124 1.08143 1.24577 0.94578 0.95635 0.93153 1.19109 1.11142 1.07269 0.94694 1.19154 0.76403 0.77557 0.84771 1.90835 1.66248 1.70947 1.16381 1.84511 1.56264 1.44969 1.45631 1.17882 0.93621 0.92113 0.82016 1.41967 1.51037 1.29060 1.07675 1.20459 0.80117 0.79166 0.88823 1.90818 1.34091 1.55339 1.59728 1.22635 0.98625 0.87300 0.94556 1.88379 1.66884 1.45515 1.29200 1.19250 0.74331 0.76307 0.78653 1.93288 1.34122 1.92379 1.95404 1.93267 1.74482 1.50050 1.94728 1.93281 1.91999 1.64461 1.64816 0.91753 0.93882 0.92908 0.74946 0.70651 0.71973 0.83225 0.84668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.15 13.29 21.45 0.28 -49.86 16 2 C 0.03 1.91 5.46 84.65 0.46 2.37 16 3 Si 0.95 45.43 29.54 68.60 2.03 47.46 16 4 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 5 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 7 C -0.54 -29.87 8.87 25.60 0.23 -29.64 16 8 H 0.05 2.86 7.12 -2.91 -0.02 2.84 16 9 C 0.27 13.12 6.08 85.63 0.52 13.65 16 10 N -0.33 -14.18 3.58 -347.29 -1.24 -15.42 16 11 N -0.31 -12.79 12.47 -56.23 -0.70 -13.49 16 12 C 0.11 3.41 11.86 85.72 1.02 4.42 16 13 C -0.31 -10.27 6.15 -20.02 -0.12 -10.39 16 14 C 0.58 16.39 8.31 70.05 0.58 16.97 16 15 O -0.55 -17.44 17.08 19.53 0.33 -17.10 16 16 O -0.50 -9.73 13.28 -57.44 -0.76 -10.49 16 17 C 0.37 14.11 6.48 132.55 0.86 14.97 16 18 N -0.64 -20.46 4.52 -307.35 -1.39 -21.85 16 19 C 0.53 18.95 7.86 87.66 0.69 19.64 16 20 O -0.53 -25.14 15.25 16.03 0.24 -24.90 16 21 C 0.05 1.17 6.14 71.24 0.44 1.61 16 22 O -0.38 -11.71 10.11 -129.94 -1.31 -13.02 16 23 C 0.61 15.05 3.75 113.37 0.43 15.47 16 24 F -0.17 -4.05 16.86 44.97 0.76 -3.29 16 25 F -0.14 -3.82 17.53 44.97 0.79 -3.03 16 26 F -0.16 -3.38 16.86 44.97 0.76 -2.63 16 27 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 28 H 0.04 2.26 8.14 -2.39 -0.02 2.25 16 29 H 0.05 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.23 5.09 8.06 -2.91 -0.02 5.07 16 31 H 0.43 3.98 9.11 -74.06 -0.67 3.30 16 32 H 0.44 9.84 8.82 -92.71 -0.82 9.02 16 33 H 0.15 2.45 7.73 -2.39 -0.02 2.43 16 34 H 0.14 2.72 7.73 -2.39 -0.02 2.70 16 Total: -1.00 -76.44 335.81 4.62 -71.82 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -0.26 Total: 6.72 kcal Atomic # 6 Polarization: 43.98 SS G_CDS: 5.10 Total: 49.08 kcal Atomic # 7 Polarization: -97.57 SS G_CDS: -3.05 Total: -100.61 kcal Atomic # 8 Polarization: -64.01 SS G_CDS: -1.50 Total: -65.51 kcal Atomic # 9 Polarization: -11.25 SS G_CDS: 2.30 Total: -8.95 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -76.44 4.62 -71.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574242633.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.470 kcal (2) G-P(sol) polarization free energy of solvation -76.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -279.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -275.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds