Wall clock time and date at job start Tue Mar 31 2020 19:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.46661 * 2 1 4 4 C 1.37102 * 119.99942 * 83.42675 * 3 2 1 5 5 H 1.08006 * 119.99960 * 211.99646 * 4 3 2 6 6 C 1.38941 * 120.00336 * 31.99165 * 4 3 2 7 7 N 1.31412 * 120.00356 * 226.57378 * 6 4 3 8 8 Si 1.86802 * 119.99966 * 46.57753 * 6 4 3 9 9 H 1.48493 * 109.47212 * 92.90198 * 8 6 4 10 10 H 1.48499 * 109.47195 * 212.90798 * 8 6 4 11 11 H 1.48505 * 109.46861 * 332.90604 * 8 6 4 12 12 C 1.34772 * 120.00398 * 263.42191 * 3 2 1 13 13 O 1.21284 * 120.00737 * 174.63875 * 12 3 2 14 14 C 1.50709 * 119.99646 * 354.63111 * 12 3 2 15 15 C 1.50694 * 115.55305 * 303.48672 * 14 12 3 16 16 C 1.38240 * 120.00238 * 132.98232 * 15 14 12 17 17 C 1.38229 * 119.99944 * 179.76381 * 16 15 14 18 18 C 1.38246 * 120.00061 * 0.51194 * 17 16 15 19 19 C 1.38230 * 119.99685 * 359.74220 * 18 17 16 20 20 C 1.38234 * 120.00336 * 0.02562 * 19 18 17 21 21 C 1.53000 * 117.49664 * 157.81137 * 14 12 3 22 22 C 1.53002 * 117.49501 * 89.15221 * 14 12 3 23 23 H 1.08999 * 117.50191 * 214.98041 * 22 14 12 24 24 Br 1.96605 * 117.49866 * 0.02562 * 22 14 12 25 25 H 1.09002 * 109.46871 * 185.88333 * 1 2 3 26 26 H 1.09003 * 109.47177 * 305.87784 * 1 2 3 27 27 H 1.08994 * 109.47232 * 65.88197 * 1 2 3 28 28 H 1.08996 * 109.47356 * 119.99446 * 2 1 3 29 29 H 1.08996 * 109.47039 * 240.00228 * 2 1 3 30 30 H 0.97006 * 120.00187 * 179.97438 * 7 6 4 31 31 H 1.08000 * 119.99672 * 0.02562 * 16 15 14 32 32 H 1.08003 * 120.00347 * 180.23148 * 17 16 15 33 33 H 1.07998 * 119.99905 * 179.72438 * 18 17 16 34 34 H 1.08002 * 119.99628 * 179.97438 * 19 18 17 35 35 H 1.08002 * 120.00034 * 179.97438 * 20 19 18 36 36 H 1.09000 * 117.49831 * 0.02562 * 21 14 12 37 37 H 1.08997 * 117.49784 * 145.02676 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1185 2.0729 1.1795 5 1 1.9656 3.1420 1.1934 6 6 2.4169 1.3985 2.3571 7 7 1.7205 1.6374 3.4457 8 14 3.8080 0.1523 2.3931 9 1 5.0615 0.8220 2.8235 10 1 3.4742 -0.9347 3.3482 11 1 3.9940 -0.4211 1.0359 12 6 2.3689 1.9721 -1.1594 13 8 2.6801 3.1443 -1.1730 14 6 2.3745 1.1762 -2.4392 15 6 3.2354 -0.0606 -2.4317 16 6 2.7316 -1.2564 -2.9085 17 6 3.5230 -2.3897 -2.9061 18 6 4.8147 -2.3298 -2.4172 19 6 5.3166 -1.1353 -1.9356 20 6 4.5269 -0.0008 -1.9424 21 6 2.2627 1.9513 -3.7536 22 6 1.0758 1.1281 -3.2468 23 1 0.8444 0.2020 -3.7730 24 35 -0.4721 2.1099 -2.5359 25 1 -0.3633 -1.0223 0.1053 26 1 -0.3634 0.6023 0.8327 27 1 -0.3633 0.4199 -0.9379 28 1 1.8934 -0.5137 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.9285 1.1663 4.2677 31 1 1.7211 -1.3041 -3.2867 32 1 3.1307 -3.3231 -3.2821 33 1 5.4315 -3.2163 -2.4112 34 1 6.3256 -1.0886 -1.5532 35 1 4.9190 0.9324 -1.5657 36 1 2.1856 3.0368 -3.6927 37 1 2.8116 1.5664 -4.6130 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001583183222.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:37 Heat of formation + Delta-G solvation = 44.373479 kcal Electronic energy + Delta-G solvation = -22301.530885 eV Core-core repulsion = 19092.012390 eV Total energy + Delta-G solvation = -3209.518495 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 337.042 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.27057 -38.20593 -36.24772 -34.92013 -32.27721 -30.96508 -30.75409 -29.66892 -29.28772 -25.91114 -23.54215 -22.87044 -22.56677 -21.51733 -21.09918 -18.41525 -17.27973 -16.76090 -15.91972 -15.45750 -15.11246 -14.58273 -14.50765 -14.37404 -13.67184 -13.27619 -13.12136 -12.82488 -12.66965 -12.39610 -12.27430 -11.98158 -11.73576 -11.47202 -11.14587 -11.05387 -10.90206 -10.82467 -10.69694 -10.52743 -10.15080 -9.86588 -9.59421 -9.04691 -8.94167 -8.78833 -8.60943 -8.22292 -7.68791 -6.61728 -3.76236 1.39853 1.51043 1.81443 3.10335 3.25564 3.32029 3.39206 3.79178 4.01684 4.17962 4.35475 4.56913 4.72513 4.89740 4.99695 5.05917 5.14294 5.25851 5.33531 5.54923 5.65187 5.72520 5.82326 5.89675 6.01668 6.11680 6.17614 6.20681 6.25870 6.50861 6.53885 6.62285 6.72645 6.75425 7.07854 7.12488 7.46603 8.36167 8.51657 9.04248 9.41174 9.90383 10.49656 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.010497 B = 0.008509 C = 0.005648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.835169 B = 3289.864733 C = 4956.141405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.096 3.904 3 N -0.428 5.428 4 C -0.344 4.344 5 H 0.104 0.896 6 C 0.091 3.909 7 N -0.810 5.810 8 Si 0.823 3.177 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.254 1.254 12 C 0.488 3.512 13 O -0.562 6.562 14 C -0.087 4.087 15 C -0.034 4.034 16 C -0.122 4.122 17 C -0.119 4.119 18 C -0.125 4.125 19 C -0.115 4.115 20 C -0.095 4.095 21 C -0.117 4.117 22 C -0.116 4.116 23 H 0.140 0.860 24 Br -0.096 7.096 25 H 0.044 0.956 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.274 0.726 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.120 0.880 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.418 -8.463 -14.060 16.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.027 4.027 3 N -0.146 5.146 4 C -0.468 4.468 5 H 0.122 0.878 6 C -0.120 4.120 7 N -0.442 5.442 8 Si 0.646 3.354 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.178 1.178 12 C 0.275 3.725 13 O -0.445 6.445 14 C -0.092 4.092 15 C -0.035 4.035 16 C -0.140 4.140 17 C -0.137 4.137 18 C -0.144 4.144 19 C -0.133 4.133 20 C -0.114 4.114 21 C -0.155 4.155 22 C -0.213 4.213 23 H 0.157 0.843 24 Br -0.014 7.014 25 H 0.063 0.937 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.144 0.856 36 H 0.138 0.862 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.904 -7.547 -13.563 15.547 hybrid contribution 1.081 -1.155 0.279 1.607 sum 0.177 -8.701 -13.284 15.881 Atomic orbital electron populations 1.22393 0.96312 1.00644 1.04110 1.21775 0.94704 0.85035 1.01233 1.43429 1.54020 1.11650 1.05536 1.18727 1.51327 0.94931 0.81854 0.87807 1.25144 0.96178 0.95791 0.94864 1.70227 1.31710 1.39491 1.02733 0.87680 0.86567 0.81807 0.79326 1.20325 1.21109 1.17763 1.18659 0.82980 0.87629 0.83228 1.90539 1.52796 1.15871 1.85328 1.20765 0.96069 0.97222 0.95100 1.18806 0.93604 0.92403 0.98685 1.20989 0.99807 0.92257 1.00912 1.21027 0.94306 0.97976 1.00400 1.21112 0.95983 0.97696 0.99562 1.21128 0.99941 0.92761 0.99458 1.21034 0.93329 0.99172 0.97818 1.23345 0.96360 1.00398 0.95407 1.25697 0.87170 1.02366 1.06064 0.84289 1.97343 1.40886 1.75977 1.87146 0.93654 0.91196 0.91568 0.92298 0.91297 0.91586 0.85961 0.86062 0.86264 0.86052 0.85641 0.86208 0.87209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.41 10.19 37.16 0.38 -3.04 16 2 C 0.10 2.04 5.09 -4.04 -0.02 2.02 16 3 N -0.43 -10.37 2.28 -114.81 -0.26 -10.63 16 4 C -0.34 -9.61 9.17 -14.93 -0.14 -9.75 16 5 H 0.10 3.28 7.75 -52.48 -0.41 2.87 16 6 C 0.09 2.48 4.81 -17.47 -0.08 2.39 16 7 N -0.81 -22.52 13.96 55.50 0.77 -21.75 16 8 Si 0.82 19.76 26.56 -169.99 -4.51 15.25 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.25 -5.90 6.67 56.52 0.38 -5.53 16 12 C 0.49 11.28 5.28 -10.98 -0.06 11.22 16 13 O -0.56 -15.05 16.28 5.55 0.09 -14.96 16 14 C -0.09 -1.53 1.44 -156.81 -0.23 -1.76 16 15 C -0.03 -0.55 3.44 -104.62 -0.36 -0.91 16 16 C -0.12 -1.62 8.19 -39.58 -0.32 -1.94 16 17 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 18 C -0.13 -1.55 10.05 -39.58 -0.40 -1.94 16 19 C -0.11 -1.63 10.05 -39.59 -0.40 -2.03 16 20 C -0.10 -1.60 9.37 -39.58 -0.37 -1.97 16 21 C -0.12 -1.74 9.57 -26.69 -0.26 -1.99 16 22 C -0.12 -1.72 6.18 -26.69 -0.16 -1.89 16 23 H 0.14 1.64 6.29 -51.93 -0.33 1.31 16 24 Br -0.10 -1.61 30.08 -68.01 -2.05 -3.66 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 27 H 0.07 1.20 4.57 -51.93 -0.24 0.96 16 28 H 0.06 1.32 4.63 -51.93 -0.24 1.08 16 29 H 0.07 1.31 3.65 -51.93 -0.19 1.12 16 30 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.12 1.38 6.13 -52.49 -0.32 1.06 16 32 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 33 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.13 2.31 7.87 -52.49 -0.41 1.89 16 36 H 0.12 1.96 7.85 -51.93 -0.41 1.55 16 37 H 0.11 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 318.53 15.07 4.80 4.80 Total: -1.00 -31.04 318.53 -8.21 -39.25 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -4.24 Total: 5.11 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -2.81 Total: -13.41 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: 0.51 Total: -32.38 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: 0.09 Total: -14.96 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.51 Total: 15.25 kcal Atomic # 35 Polarization: -1.61 SS G_CDS: -2.05 Total: -3.66 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.04 -8.21 -39.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583183222.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.625 kcal (2) G-P(sol) polarization free energy of solvation -31.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds