Wall clock time and date at job start Tue Mar 31 2020 19:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.46661 * 2 1 4 4 C 1.37102 * 119.99942 * 83.42675 * 3 2 1 5 5 H 1.08006 * 119.99960 * 211.99646 * 4 3 2 6 6 C 1.38941 * 120.00336 * 31.99165 * 4 3 2 7 7 N 1.31412 * 120.00356 * 226.57378 * 6 4 3 8 8 Si 1.86802 * 119.99966 * 46.57753 * 6 4 3 9 9 H 1.48493 * 109.47212 * 92.90198 * 8 6 4 10 10 H 1.48499 * 109.47195 * 212.90798 * 8 6 4 11 11 H 1.48505 * 109.46861 * 332.90604 * 8 6 4 12 12 C 1.34772 * 120.00398 * 263.42191 * 3 2 1 13 13 O 1.21284 * 120.00737 * 174.63875 * 12 3 2 14 14 C 1.50709 * 119.99646 * 354.63111 * 12 3 2 15 15 C 1.50694 * 115.55305 * 303.48672 * 14 12 3 16 16 C 1.38240 * 120.00238 * 132.98232 * 15 14 12 17 17 C 1.38229 * 119.99944 * 179.76381 * 16 15 14 18 18 C 1.38246 * 120.00061 * 0.51194 * 17 16 15 19 19 C 1.38230 * 119.99685 * 359.74220 * 18 17 16 20 20 C 1.38234 * 120.00336 * 0.02562 * 19 18 17 21 21 C 1.53000 * 117.49664 * 157.81137 * 14 12 3 22 22 C 1.53002 * 117.49501 * 89.15221 * 14 12 3 23 23 H 1.08999 * 117.50191 * 214.98041 * 22 14 12 24 24 Br 1.96605 * 117.49866 * 0.02562 * 22 14 12 25 25 H 1.09002 * 109.46871 * 185.88333 * 1 2 3 26 26 H 1.09003 * 109.47177 * 305.87784 * 1 2 3 27 27 H 1.08994 * 109.47232 * 65.88197 * 1 2 3 28 28 H 1.08996 * 109.47356 * 119.99446 * 2 1 3 29 29 H 1.08996 * 109.47039 * 240.00228 * 2 1 3 30 30 H 0.97006 * 120.00187 * 179.97438 * 7 6 4 31 31 H 1.08000 * 119.99672 * 0.02562 * 16 15 14 32 32 H 1.08003 * 120.00347 * 180.23148 * 17 16 15 33 33 H 1.07998 * 119.99905 * 179.72438 * 18 17 16 34 34 H 1.08002 * 119.99628 * 179.97438 * 19 18 17 35 35 H 1.08002 * 120.00034 * 179.97438 * 20 19 18 36 36 H 1.09000 * 117.49831 * 0.02562 * 21 14 12 37 37 H 1.08997 * 117.49784 * 145.02676 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1185 2.0729 1.1795 5 1 1.9656 3.1420 1.1934 6 6 2.4169 1.3985 2.3571 7 7 1.7205 1.6374 3.4457 8 14 3.8080 0.1523 2.3931 9 1 5.0615 0.8220 2.8235 10 1 3.4742 -0.9347 3.3482 11 1 3.9940 -0.4211 1.0359 12 6 2.3689 1.9721 -1.1594 13 8 2.6801 3.1443 -1.1730 14 6 2.3745 1.1762 -2.4392 15 6 3.2354 -0.0606 -2.4317 16 6 2.7316 -1.2564 -2.9085 17 6 3.5230 -2.3897 -2.9061 18 6 4.8147 -2.3298 -2.4172 19 6 5.3166 -1.1353 -1.9356 20 6 4.5269 -0.0008 -1.9424 21 6 2.2627 1.9513 -3.7536 22 6 1.0758 1.1281 -3.2468 23 1 0.8444 0.2020 -3.7730 24 35 -0.4721 2.1099 -2.5359 25 1 -0.3633 -1.0223 0.1053 26 1 -0.3634 0.6023 0.8327 27 1 -0.3633 0.4199 -0.9379 28 1 1.8934 -0.5137 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.9285 1.1663 4.2677 31 1 1.7211 -1.3041 -3.2867 32 1 3.1307 -3.3231 -3.2821 33 1 5.4315 -3.2163 -2.4112 34 1 6.3256 -1.0886 -1.5532 35 1 4.9190 0.9324 -1.5657 36 1 2.1856 3.0368 -3.6927 37 1 2.8116 1.5664 -4.6130 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001583183222.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:36 Heat of formation + Delta-G solvation = 26.295152 kcal Electronic energy + Delta-G solvation = -22302.314820 eV Core-core repulsion = 19092.012390 eV Total energy + Delta-G solvation = -3210.302431 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 337.042 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.65739 -39.59977 -37.69182 -36.76826 -34.33012 -32.07571 -31.79389 -31.29860 -30.59282 -27.76474 -25.00809 -24.25255 -23.90055 -22.78241 -22.37834 -19.98853 -18.80912 -18.44514 -17.50106 -17.16793 -16.34407 -16.24033 -15.67673 -15.58721 -15.36275 -14.79151 -14.52650 -14.42280 -14.22334 -13.89400 -13.67751 -13.58206 -13.25006 -12.77260 -12.77076 -12.62620 -12.37722 -12.19147 -12.08590 -11.94422 -11.72323 -11.61724 -11.01530 -10.81170 -10.53749 -10.18978 -9.82646 -9.69444 -9.47571 -8.72440 -5.90525 0.36147 0.48779 0.58648 1.17808 1.29583 1.41229 1.76472 2.16893 2.41019 2.57836 2.83963 3.01167 3.31988 3.63994 3.74024 3.82921 4.10354 4.13904 4.22451 4.28217 4.36411 4.55189 4.61603 4.63836 4.70111 4.73513 4.88743 4.97121 5.06272 5.12729 5.14563 5.44221 5.52195 5.55958 5.62275 5.65637 6.09302 6.13682 6.54404 7.02192 7.42314 7.98698 8.45236 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.010497 B = 0.008509 C = 0.005648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.835169 B = 3289.864733 C = 4956.141405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.094 3.906 3 N -0.437 5.437 4 C -0.368 4.368 5 H 0.045 0.955 6 C 0.059 3.941 7 N -0.848 5.848 8 Si 0.892 3.108 9 H -0.285 1.285 10 H -0.268 1.268 11 H -0.241 1.241 12 C 0.489 3.511 13 O -0.614 6.614 14 C -0.105 4.105 15 C -0.050 4.050 16 C -0.119 4.119 17 C -0.108 4.108 18 C -0.120 4.120 19 C -0.125 4.125 20 C -0.128 4.128 21 C -0.108 4.108 22 C -0.094 4.094 23 H 0.186 0.814 24 Br -0.123 7.123 25 H 0.081 0.919 26 H 0.030 0.970 27 H 0.078 0.922 28 H 0.046 0.954 29 H 0.099 0.901 30 H 0.282 0.718 31 H 0.150 0.850 32 H 0.161 0.839 33 H 0.152 0.848 34 H 0.131 0.869 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.064 -13.121 -16.636 21.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.029 4.029 3 N -0.155 5.155 4 C -0.494 4.494 5 H 0.063 0.937 6 C -0.151 4.151 7 N -0.480 5.480 8 Si 0.713 3.287 9 H -0.212 1.212 10 H -0.193 1.193 11 H -0.164 1.164 12 C 0.278 3.722 13 O -0.500 6.500 14 C -0.110 4.110 15 C -0.051 4.051 16 C -0.137 4.137 17 C -0.126 4.126 18 C -0.137 4.137 19 C -0.143 4.143 20 C -0.146 4.146 21 C -0.146 4.146 22 C -0.190 4.190 23 H 0.203 0.797 24 Br -0.041 7.041 25 H 0.100 0.900 26 H 0.050 0.950 27 H 0.097 0.903 28 H 0.064 0.936 29 H 0.117 0.883 30 H 0.092 0.908 31 H 0.168 0.832 32 H 0.179 0.821 33 H 0.170 0.830 34 H 0.149 0.851 35 H 0.107 0.893 36 H 0.115 0.885 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.556 -12.232 -16.140 20.259 hybrid contribution 0.993 0.361 1.046 1.487 sum 0.437 -11.871 -15.094 19.208 Atomic orbital electron populations 1.22361 0.95123 1.02257 1.03171 1.21958 0.95706 0.83224 1.01964 1.43453 1.54708 1.12674 1.04690 1.18269 1.53782 0.92959 0.84353 0.93747 1.25650 0.97167 0.98127 0.94109 1.70243 1.32811 1.41409 1.03579 0.86622 0.82181 0.79700 0.80171 1.21175 1.19273 1.16395 1.19489 0.80662 0.87225 0.84780 1.90498 1.54369 1.18542 1.86636 1.20445 0.99209 0.98464 0.92873 1.18714 0.93035 0.92638 1.00696 1.21276 1.01157 0.91193 1.00076 1.21507 0.93668 0.98872 0.98544 1.21533 0.96697 0.97706 0.97794 1.21334 1.00332 0.92833 0.99803 1.20954 0.94679 0.98899 1.00088 1.23484 0.96504 0.99345 0.95238 1.26018 0.85295 1.03495 1.04151 0.79671 1.97367 1.42113 1.77003 1.87599 0.90007 0.95024 0.90343 0.93581 0.88313 0.90757 0.83238 0.82130 0.83046 0.85079 0.89300 0.88451 0.83214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.43 10.19 71.98 0.73 -5.70 16 2 C 0.09 3.90 5.09 86.38 0.44 4.34 16 3 N -0.44 -21.86 2.28 -635.54 -1.45 -23.31 16 4 C -0.37 -21.93 9.17 84.04 0.77 -21.16 16 5 H 0.04 3.11 7.75 -2.91 -0.02 3.08 16 6 C 0.06 3.32 4.81 84.92 0.41 3.73 16 7 N -0.85 -49.01 13.96 21.66 0.30 -48.71 16 8 Si 0.89 41.77 26.56 68.60 1.82 43.59 16 9 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 11 H -0.24 -10.70 6.67 99.48 0.66 -10.04 16 12 C 0.49 23.39 5.28 87.66 0.46 23.85 16 13 O -0.61 -35.15 16.28 -3.04 -0.05 -35.20 16 14 C -0.11 -3.58 1.44 -53.67 -0.08 -3.66 16 15 C -0.05 -1.48 3.44 -19.87 -0.07 -1.55 16 16 C -0.12 -2.52 8.19 22.27 0.18 -2.34 16 17 C -0.11 -1.88 10.05 22.27 0.22 -1.66 16 18 C -0.12 -2.31 10.05 22.27 0.22 -2.09 16 19 C -0.13 -3.21 10.05 22.27 0.22 -2.99 16 20 C -0.13 -4.16 9.37 22.27 0.21 -3.95 16 21 C -0.11 -3.01 9.57 30.62 0.29 -2.71 16 22 C -0.09 -2.51 6.18 30.62 0.19 -2.32 16 23 H 0.19 3.26 6.29 -2.39 -0.02 3.24 16 24 Br -0.12 -4.07 30.08 -20.37 -0.61 -4.68 16 25 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.08 2.73 4.57 -2.39 -0.01 2.71 16 28 H 0.05 2.00 4.63 -2.39 -0.01 1.99 16 29 H 0.10 3.47 3.65 -2.39 -0.01 3.46 16 30 H 0.28 14.86 8.31 -92.70 -0.77 14.09 16 31 H 0.15 2.29 6.13 -2.91 -0.02 2.28 16 32 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 34 H 0.13 2.95 8.06 -2.91 -0.02 2.93 16 35 H 0.09 3.44 7.87 -2.91 -0.02 3.42 16 36 H 0.10 3.20 7.85 -2.39 -0.02 3.18 16 37 H 0.15 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -75.12 318.53 5.28 -69.84 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 1.05 Total: 16.67 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: 4.21 Total: -18.21 kcal Atomic # 7 Polarization: -70.87 SS G_CDS: -1.15 Total: -72.02 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -0.05 Total: -35.20 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 1.82 Total: 43.59 kcal Atomic # 35 Polarization: -4.07 SS G_CDS: -0.61 Total: -4.68 kcal Total: -75.12 5.28 -69.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583183222.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.136 kcal (2) G-P(sol) polarization free energy of solvation -75.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds