Wall clock time and date at job start Tue Mar 31 2020 19:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46500 * 109.47421 * 2 1 4 4 C 1.37098 * 120.00207 * 273.68548 * 3 2 1 5 5 H 1.07993 * 120.00127 * 183.80618 * 4 3 2 6 6 C 1.38948 * 119.99582 * 3.81210 * 4 3 2 7 7 N 1.31411 * 120.00507 * 19.58371 * 6 4 3 8 8 Si 1.86803 * 119.99705 * 199.58780 * 6 4 3 9 9 H 1.48495 * 109.47201 * 60.00252 * 8 6 4 10 10 H 1.48503 * 109.46728 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46966 * 299.99792 * 8 6 4 12 12 C 1.34786 * 120.00100 * 93.68483 * 3 2 1 13 13 O 1.21284 * 119.99896 * 186.50407 * 12 3 2 14 14 C 1.50698 * 119.99732 * 6.50176 * 12 3 2 15 15 C 1.50704 * 115.56449 * 54.23218 * 14 12 3 16 16 C 1.38240 * 119.99415 * 30.28248 * 15 14 12 17 17 C 1.38238 * 119.99642 * 179.76419 * 16 15 14 18 18 C 1.38241 * 119.99844 * 0.48873 * 17 16 15 19 19 C 1.38233 * 120.00064 * 359.79133 * 18 17 16 20 20 C 1.38229 * 120.00256 * 210.55914 * 15 14 12 21 21 C 1.53004 * 117.49866 * 268.54393 * 14 12 3 22 22 C 1.52996 * 117.49850 * 199.92253 * 14 12 3 23 23 H 1.09007 * 117.49920 * 0.02562 * 22 14 12 24 24 Br 1.96606 * 117.50094 * 214.98153 * 22 14 12 25 25 H 1.09005 * 109.47584 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47532 * 300.00166 * 1 2 3 27 27 H 1.09002 * 109.46965 * 60.00130 * 1 2 3 28 28 H 1.09003 * 109.47532 * 239.99834 * 2 1 3 29 29 H 1.09002 * 109.46965 * 119.99870 * 2 1 3 30 30 H 0.96994 * 120.00634 * 179.97438 * 7 6 4 31 31 H 1.07994 * 120.00189 * 0.02562 * 16 15 14 32 32 H 1.07997 * 119.99920 * 180.25460 * 17 16 15 33 33 H 1.08001 * 119.99858 * 179.76665 * 18 17 16 34 34 H 1.08000 * 120.00168 * 179.97438 * 19 18 17 35 35 H 1.07997 * 120.00094 * 0.02562 * 20 15 14 36 36 H 1.09000 * 117.49789 * 145.02347 * 21 14 12 37 37 H 1.08997 * 117.49856 * 0.02562 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1749 2.0529 -1.1848 5 1 2.5927 3.0488 -1.1898 6 6 1.7959 1.4525 -2.3792 7 7 0.9565 0.4415 -2.3690 8 14 2.4799 2.0823 -3.9994 9 1 3.9600 1.9630 -3.9917 10 1 1.9247 1.2776 -5.1172 11 1 2.0989 3.5066 -4.1772 12 6 2.3137 1.9916 1.1649 13 8 2.6044 3.1690 1.1758 14 6 2.2828 1.2110 2.4535 15 6 3.1224 -0.0403 2.4762 16 6 4.2764 -0.1121 1.7185 17 6 5.0492 -1.2580 1.7431 18 6 4.6625 -2.3360 2.5174 19 6 3.5055 -2.2663 3.2706 20 6 2.7355 -1.1183 3.2501 21 6 0.9695 1.1948 3.2383 22 6 2.1605 2.0033 3.7566 23 1 2.1020 3.0892 3.6818 24 35 3.1107 1.3112 5.3325 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5138 0.8900 30 1 0.6917 0.0225 -3.2028 31 1 4.5765 0.7286 1.1107 32 1 5.9529 -1.3126 1.1543 33 1 5.2643 -3.2326 2.5337 34 1 3.2032 -3.1085 3.8752 35 1 1.8314 -1.0641 3.8383 36 1 0.7128 0.2791 3.7710 37 1 0.1277 1.7484 2.8223 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001583183223.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:40 Heat of formation + Delta-G solvation = 45.484049 kcal Electronic energy + Delta-G solvation = -22097.017758 eV Core-core repulsion = 18887.547420 eV Total energy + Delta-G solvation = -3209.470338 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 337.042 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.17307 -38.07088 -36.28157 -34.96781 -31.81125 -30.64974 -30.40857 -29.60316 -29.38692 -25.71056 -23.65873 -22.45856 -22.22513 -21.47047 -20.96149 -18.53825 -17.11832 -16.75966 -15.98432 -15.16256 -14.82559 -14.45169 -14.17343 -14.13138 -13.69897 -13.21798 -12.93675 -12.81346 -12.64168 -12.14518 -11.79386 -11.61169 -11.39334 -11.24657 -11.11324 -11.03440 -10.78532 -10.75501 -10.40060 -10.34705 -10.14157 -9.90039 -9.58287 -9.40156 -8.87147 -8.56041 -8.55539 -8.18527 -7.78350 -6.32892 -3.84722 1.56658 1.72862 1.82234 3.11215 3.21292 3.24465 3.47827 3.85762 4.04227 4.22494 4.58948 4.77824 4.92090 5.02664 5.17900 5.23139 5.26369 5.42356 5.54752 5.68209 5.84754 5.94579 5.95552 6.09619 6.27035 6.33166 6.35592 6.65688 6.74923 6.77829 6.81821 6.87245 6.94749 7.28263 7.33785 7.48129 7.85500 8.01601 8.46413 9.11088 9.37934 9.91414 10.58503 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.016964 B = 0.005030 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.130458 B = 5564.793063 C = 6196.252595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.118 3.882 3 N -0.422 5.422 4 C -0.304 4.304 5 H 0.105 0.895 6 C 0.030 3.970 7 N -0.864 5.864 8 Si 0.924 3.076 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.468 3.532 13 O -0.591 6.591 14 C -0.072 4.072 15 C -0.031 4.031 16 C -0.092 4.092 17 C -0.118 4.118 18 C -0.124 4.124 19 C -0.122 4.122 20 C -0.107 4.107 21 C -0.139 4.139 22 C -0.085 4.085 23 H 0.147 0.853 24 Br -0.124 7.124 25 H 0.032 0.968 26 H 0.016 0.984 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.046 0.954 30 H 0.267 0.733 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.111 0.889 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.043 -6.285 11.578 13.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.005 4.005 3 N -0.138 5.138 4 C -0.431 4.431 5 H 0.122 0.878 6 C -0.173 4.173 7 N -0.504 5.504 8 Si 0.751 3.249 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.199 1.199 12 C 0.255 3.745 13 O -0.477 6.477 14 C -0.077 4.077 15 C -0.031 4.031 16 C -0.111 4.111 17 C -0.136 4.136 18 C -0.142 4.142 19 C -0.140 4.140 20 C -0.125 4.125 21 C -0.177 4.177 22 C -0.181 4.181 23 H 0.165 0.835 24 Br -0.043 7.043 25 H 0.051 0.949 26 H 0.035 0.965 27 H 0.119 0.881 28 H 0.114 0.886 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.142 0.858 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.129 0.871 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.414 -6.079 11.930 13.605 hybrid contribution -0.035 0.262 -1.160 1.190 sum 2.379 -5.818 10.770 12.470 Atomic orbital electron populations 1.22238 0.96571 0.99573 1.01943 1.21682 0.94756 0.83036 1.00982 1.43701 1.53893 1.11860 1.04346 1.19766 1.39290 1.01918 0.82119 0.87767 1.25243 0.95603 0.96835 0.99609 1.70174 1.28771 1.24029 1.27465 0.86021 0.79474 0.78808 0.80592 1.19933 1.20921 1.19871 1.18473 0.86390 0.86723 0.82904 1.90525 1.55708 1.15706 1.85802 1.20451 0.99139 0.95647 0.92491 1.18680 0.94620 0.92743 0.97090 1.21040 0.93917 0.98339 0.97754 1.21056 0.99813 0.93430 0.99340 1.21052 0.97131 0.98380 0.97681 1.20948 0.95465 0.97589 0.99963 1.20938 0.99891 0.92877 0.98814 1.23498 0.91655 1.01781 1.00794 1.25652 1.02232 1.00973 0.89231 0.83495 1.97258 1.78816 1.88407 1.39785 0.94862 0.96476 0.88118 0.88553 0.93641 0.92230 0.85838 0.86272 0.86572 0.86430 0.86210 0.87101 0.86813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 9.56 37.15 0.36 -2.71 16 2 C 0.12 2.62 4.96 -4.05 -0.02 2.60 16 3 N -0.42 -10.33 2.59 -114.82 -0.30 -10.63 16 4 C -0.30 -8.09 9.49 -14.93 -0.14 -8.23 16 5 H 0.10 2.94 7.27 -52.49 -0.38 2.56 16 6 C 0.03 0.74 5.12 -17.47 -0.09 0.65 16 7 N -0.86 -21.29 7.63 55.50 0.42 -20.86 16 8 Si 0.92 19.98 29.60 -169.99 -5.03 14.95 16 9 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 10 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 11 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 12 C 0.47 11.08 5.86 -10.98 -0.06 11.01 16 13 O -0.59 -16.00 16.06 5.55 0.09 -15.91 16 14 C -0.07 -1.35 1.63 -156.81 -0.26 -1.61 16 15 C -0.03 -0.53 2.34 -104.62 -0.24 -0.77 16 16 C -0.09 -1.65 8.76 -39.58 -0.35 -1.99 16 17 C -0.12 -1.78 10.05 -39.58 -0.40 -2.18 16 18 C -0.12 -1.65 10.05 -39.58 -0.40 -2.05 16 19 C -0.12 -1.61 10.05 -39.58 -0.40 -2.00 16 20 C -0.11 -1.58 7.82 -39.58 -0.31 -1.89 16 21 C -0.14 -2.17 8.91 -26.73 -0.24 -2.40 16 22 C -0.08 -1.41 6.47 -26.73 -0.17 -1.58 16 23 H 0.15 2.58 7.81 -51.93 -0.41 2.17 16 24 Br -0.12 -1.81 32.04 -68.01 -2.18 -3.98 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.02 0.33 7.48 -51.93 -0.39 -0.06 16 27 H 0.10 2.42 5.85 -51.93 -0.30 2.11 16 28 H 0.10 2.33 6.03 -51.93 -0.31 2.02 16 29 H 0.05 0.92 4.16 -51.93 -0.22 0.71 16 30 H 0.27 6.29 8.31 -40.82 -0.34 5.95 16 31 H 0.12 2.47 7.35 -52.49 -0.39 2.09 16 32 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 33 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.12 1.59 5.94 -52.49 -0.31 1.28 16 36 H 0.11 1.47 6.10 -51.93 -0.32 1.15 16 37 H 0.11 1.80 7.97 -51.93 -0.41 1.38 16 LS Contribution 316.89 15.07 4.78 4.78 Total: -1.00 -27.99 316.89 -9.20 -37.20 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -4.26 Total: 7.62 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -2.72 Total: -13.15 kcal Atomic # 7 Polarization: -31.62 SS G_CDS: 0.13 Total: -31.49 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: 0.09 Total: -15.91 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.03 Total: 14.95 kcal Atomic # 35 Polarization: -1.81 SS G_CDS: -2.18 Total: -3.98 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.99 -9.20 -37.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583183223.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.679 kcal (2) G-P(sol) polarization free energy of solvation -27.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds