Wall clock time and date at job start Tue Mar 31 2020 19:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46500 * 109.47421 * 2 1 4 4 C 1.37098 * 120.00207 * 273.68548 * 3 2 1 5 5 H 1.07993 * 120.00127 * 183.80618 * 4 3 2 6 6 C 1.38948 * 119.99582 * 3.81210 * 4 3 2 7 7 N 1.31411 * 120.00507 * 19.58371 * 6 4 3 8 8 Si 1.86803 * 119.99705 * 199.58780 * 6 4 3 9 9 H 1.48495 * 109.47201 * 60.00252 * 8 6 4 10 10 H 1.48503 * 109.46728 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46966 * 299.99792 * 8 6 4 12 12 C 1.34786 * 120.00100 * 93.68483 * 3 2 1 13 13 O 1.21284 * 119.99896 * 186.50407 * 12 3 2 14 14 C 1.50698 * 119.99732 * 6.50176 * 12 3 2 15 15 C 1.50704 * 115.56449 * 54.23218 * 14 12 3 16 16 C 1.38240 * 119.99415 * 30.28248 * 15 14 12 17 17 C 1.38238 * 119.99642 * 179.76419 * 16 15 14 18 18 C 1.38241 * 119.99844 * 0.48873 * 17 16 15 19 19 C 1.38233 * 120.00064 * 359.79133 * 18 17 16 20 20 C 1.38229 * 120.00256 * 210.55914 * 15 14 12 21 21 C 1.53004 * 117.49866 * 268.54393 * 14 12 3 22 22 C 1.52996 * 117.49850 * 199.92253 * 14 12 3 23 23 H 1.09007 * 117.49920 * 0.02562 * 22 14 12 24 24 Br 1.96606 * 117.50094 * 214.98153 * 22 14 12 25 25 H 1.09005 * 109.47584 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47532 * 300.00166 * 1 2 3 27 27 H 1.09002 * 109.46965 * 60.00130 * 1 2 3 28 28 H 1.09003 * 109.47532 * 239.99834 * 2 1 3 29 29 H 1.09002 * 109.46965 * 119.99870 * 2 1 3 30 30 H 0.96994 * 120.00634 * 179.97438 * 7 6 4 31 31 H 1.07994 * 120.00189 * 0.02562 * 16 15 14 32 32 H 1.07997 * 119.99920 * 180.25460 * 17 16 15 33 33 H 1.08001 * 119.99858 * 179.76665 * 18 17 16 34 34 H 1.08000 * 120.00168 * 179.97438 * 19 18 17 35 35 H 1.07997 * 120.00094 * 0.02562 * 20 15 14 36 36 H 1.09000 * 117.49789 * 145.02347 * 21 14 12 37 37 H 1.08997 * 117.49856 * 0.02562 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1749 2.0529 -1.1848 5 1 2.5927 3.0488 -1.1898 6 6 1.7959 1.4525 -2.3792 7 7 0.9565 0.4415 -2.3690 8 14 2.4799 2.0823 -3.9994 9 1 3.9600 1.9630 -3.9917 10 1 1.9247 1.2776 -5.1172 11 1 2.0989 3.5066 -4.1772 12 6 2.3137 1.9916 1.1649 13 8 2.6044 3.1690 1.1758 14 6 2.2828 1.2110 2.4535 15 6 3.1224 -0.0403 2.4762 16 6 4.2764 -0.1121 1.7185 17 6 5.0492 -1.2580 1.7431 18 6 4.6625 -2.3360 2.5174 19 6 3.5055 -2.2663 3.2706 20 6 2.7355 -1.1183 3.2501 21 6 0.9695 1.1948 3.2383 22 6 2.1605 2.0033 3.7566 23 1 2.1020 3.0892 3.6818 24 35 3.1107 1.3112 5.3325 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5138 0.8900 30 1 0.6917 0.0225 -3.2028 31 1 4.5765 0.7286 1.1107 32 1 5.9529 -1.3126 1.1543 33 1 5.2643 -3.2326 2.5337 34 1 3.2032 -3.1085 3.8752 35 1 1.8314 -1.0641 3.8383 36 1 0.7128 0.2791 3.7710 37 1 0.1277 1.7484 2.8223 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001583183223.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:40 Heat of formation + Delta-G solvation = 31.913038 kcal Electronic energy + Delta-G solvation = -22097.606241 eV Core-core repulsion = 18887.547420 eV Total energy + Delta-G solvation = -3210.058821 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 337.042 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.63838 -39.54723 -37.78516 -36.80572 -33.71189 -31.85453 -31.60374 -31.19390 -30.83592 -27.51598 -25.14535 -23.96372 -23.64458 -22.80005 -22.38908 -20.08744 -18.78145 -18.45097 -17.44102 -16.89172 -16.17498 -15.98806 -15.65660 -15.50073 -15.29351 -14.74960 -14.57720 -14.21853 -13.97299 -13.69957 -13.56355 -13.07539 -12.86346 -12.82302 -12.58918 -12.55215 -12.30734 -12.11913 -12.04225 -11.96893 -11.67426 -11.59806 -10.86772 -10.81195 -10.63052 -10.36197 -9.76040 -9.70657 -9.37891 -8.25871 -5.86075 0.38421 0.53052 0.58307 1.34619 1.41019 1.49723 1.84890 2.22897 2.44955 2.93104 3.02868 3.09255 3.40108 3.67220 3.77556 3.85607 4.15246 4.21571 4.31982 4.41656 4.59735 4.63348 4.68674 4.79287 4.85347 4.96015 5.02718 5.12370 5.19854 5.21114 5.40473 5.55659 5.63523 5.68042 5.74080 6.03873 6.05411 6.16617 6.54350 7.16535 7.49010 8.03169 8.62777 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.016964 B = 0.005030 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.130458 B = 5564.793063 C = 6196.252595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.127 3.873 3 N -0.430 5.430 4 C -0.347 4.347 5 H 0.072 0.928 6 C 0.006 3.994 7 N -0.864 5.864 8 Si 0.981 3.019 9 H -0.276 1.276 10 H -0.266 1.266 11 H -0.278 1.278 12 C 0.460 3.540 13 O -0.642 6.642 14 C -0.089 4.089 15 C -0.044 4.044 16 C -0.123 4.123 17 C -0.125 4.125 18 C -0.117 4.117 19 C -0.112 4.112 20 C -0.109 4.109 21 C -0.115 4.115 22 C -0.087 4.087 23 H 0.129 0.871 24 Br -0.096 7.096 25 H 0.057 0.943 26 H 0.027 0.973 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.273 0.727 31 H 0.082 0.918 32 H 0.130 0.870 33 H 0.151 0.849 34 H 0.156 0.844 35 H 0.140 0.860 36 H 0.145 0.855 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.596 -9.461 13.022 16.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.004 3.996 3 N -0.145 5.145 4 C -0.475 4.475 5 H 0.090 0.910 6 C -0.197 4.197 7 N -0.502 5.502 8 Si 0.805 3.195 9 H -0.202 1.202 10 H -0.191 1.191 11 H -0.203 1.203 12 C 0.249 3.751 13 O -0.531 6.531 14 C -0.093 4.093 15 C -0.044 4.044 16 C -0.142 4.142 17 C -0.142 4.142 18 C -0.135 4.135 19 C -0.130 4.130 20 C -0.126 4.126 21 C -0.153 4.153 22 C -0.184 4.184 23 H 0.147 0.853 24 Br -0.014 7.014 25 H 0.076 0.924 26 H 0.046 0.954 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.148 0.852 33 H 0.169 0.831 34 H 0.174 0.826 35 H 0.157 0.843 36 H 0.163 0.837 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.947 -9.294 13.376 16.404 hybrid contribution 0.158 1.221 -1.572 1.997 sum 2.104 -8.073 11.804 14.454 Atomic orbital electron populations 1.22092 0.95637 1.00779 1.00952 1.21639 0.95340 0.81719 1.00866 1.43836 1.53960 1.12586 1.04120 1.19620 1.41932 1.01755 0.84175 0.91017 1.25842 0.95201 0.97041 1.01590 1.70266 1.27819 1.23753 1.28383 0.85193 0.78615 0.78211 0.77479 1.20155 1.19077 1.20342 1.19311 0.84757 0.86574 0.84441 1.90468 1.57509 1.18175 1.86976 1.20195 1.02229 0.96513 0.90405 1.18607 0.94400 0.92909 0.98489 1.20896 0.95704 0.98519 0.99075 1.21256 0.99933 0.93135 0.99926 1.21454 0.97357 0.98557 0.96120 1.21414 0.94537 0.97844 0.99211 1.21156 1.00785 0.92383 0.98315 1.23636 0.90222 1.02567 0.98860 1.25549 1.03059 1.00287 0.89496 0.85335 1.97249 1.78586 1.87964 1.37639 0.92397 0.95423 0.91081 0.90892 0.91421 0.91664 0.90004 0.85168 0.83122 0.82636 0.84275 0.83737 0.87203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.67 9.56 71.98 0.69 -4.98 16 2 C 0.13 5.65 4.96 86.38 0.43 6.08 16 3 N -0.43 -22.05 2.59 -635.55 -1.65 -23.70 16 4 C -0.35 -19.62 9.49 84.04 0.80 -18.82 16 5 H 0.07 4.41 7.27 -2.91 -0.02 4.39 16 6 C 0.01 0.32 5.12 84.93 0.43 0.75 16 7 N -0.86 -42.89 7.63 21.66 0.17 -42.72 16 8 Si 0.98 41.85 29.60 68.60 2.03 43.88 16 9 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 10 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 11 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 12 C 0.46 22.99 5.86 87.66 0.51 23.51 16 13 O -0.64 -37.39 16.06 -3.04 -0.05 -37.44 16 14 C -0.09 -3.34 1.63 -53.67 -0.09 -3.42 16 15 C -0.04 -1.46 2.34 -19.86 -0.05 -1.51 16 16 C -0.12 -4.50 8.76 22.27 0.20 -4.30 16 17 C -0.12 -3.59 10.05 22.27 0.22 -3.37 16 18 C -0.12 -2.65 10.05 22.27 0.22 -2.43 16 19 C -0.11 -2.43 10.05 22.27 0.22 -2.21 16 20 C -0.11 -2.82 7.82 22.27 0.17 -2.65 16 21 C -0.11 -3.41 8.91 30.60 0.27 -3.14 16 22 C -0.09 -2.89 6.47 30.59 0.20 -2.69 16 23 H 0.13 4.71 7.81 -2.38 -0.02 4.69 16 24 Br -0.10 -2.62 32.04 -20.37 -0.65 -3.27 16 25 H 0.06 2.07 8.14 -2.38 -0.02 2.06 16 26 H 0.03 1.05 7.48 -2.39 -0.02 1.03 16 27 H 0.07 3.41 5.85 -2.39 -0.01 3.40 16 28 H 0.07 3.58 6.03 -2.39 -0.01 3.56 16 29 H 0.07 2.71 4.16 -2.39 -0.01 2.70 16 30 H 0.27 12.72 8.31 -92.71 -0.77 11.95 16 31 H 0.08 3.58 7.35 -2.91 -0.02 3.56 16 32 H 0.13 3.31 8.06 -2.91 -0.02 3.29 16 33 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 34 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 35 H 0.14 3.03 5.94 -2.91 -0.02 3.01 16 36 H 0.14 3.27 6.10 -2.39 -0.01 3.26 16 37 H 0.11 3.36 7.97 -2.39 -0.02 3.35 16 Total: -1.00 -65.06 316.89 5.18 -59.88 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 1.09 Total: 22.55 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: 4.24 Total: -19.17 kcal Atomic # 7 Polarization: -64.94 SS G_CDS: -1.48 Total: -66.42 kcal Atomic # 8 Polarization: -37.39 SS G_CDS: -0.05 Total: -37.44 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Atomic # 35 Polarization: -2.62 SS G_CDS: -0.65 Total: -3.27 kcal Total: -65.06 5.18 -59.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583183223.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.793 kcal (2) G-P(sol) polarization free energy of solvation -65.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds