Wall clock time and date at job start Tue Mar 31 2020 19:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47116 * 2 1 4 4 C 1.37097 * 120.00069 * 269.88417 * 3 2 1 5 5 H 1.07998 * 119.99855 * 189.01683 * 4 3 2 6 6 C 1.38948 * 120.00142 * 9.01768 * 4 3 2 7 7 N 1.31412 * 119.99973 * 9.72652 * 6 4 3 8 8 Si 1.86800 * 120.00186 * 189.71987 * 6 4 3 9 9 H 1.48493 * 109.46929 * 90.00250 * 8 6 4 10 10 H 1.48502 * 109.47045 * 210.00078 * 8 6 4 11 11 H 1.48499 * 109.47249 * 330.00219 * 8 6 4 12 12 C 1.34777 * 119.99797 * 89.89159 * 3 2 1 13 13 O 1.21291 * 119.99867 * 186.06668 * 12 3 2 14 14 C 1.50700 * 120.00249 * 6.06119 * 12 3 2 15 15 C 1.50696 * 115.54808 * 54.41964 * 14 12 3 16 16 C 1.38244 * 119.99998 * 211.00205 * 15 14 12 17 17 C 1.38235 * 119.99561 * 180.25624 * 16 15 14 18 18 C 1.38232 * 120.00505 * 359.50897 * 17 16 15 19 19 C 1.38236 * 119.99907 * 0.27518 * 18 17 16 20 20 C 1.38234 * 119.99738 * 359.95836 * 19 18 17 21 21 C 1.52995 * 117.51850 * 200.11771 * 14 12 3 22 22 C 1.52998 * 117.50011 * 268.75011 * 14 12 3 23 23 H 1.09003 * 117.49865 * 144.97503 * 22 14 12 24 24 Br 1.96596 * 117.49796 * 359.97128 * 22 14 12 25 25 H 1.09001 * 109.47133 * 61.12766 * 1 2 3 26 26 H 1.08996 * 109.47556 * 181.13165 * 1 2 3 27 27 H 1.09007 * 109.47108 * 301.13300 * 1 2 3 28 28 H 1.08997 * 109.47096 * 240.00152 * 2 1 3 29 29 H 1.08998 * 109.47393 * 120.00137 * 2 1 3 30 30 H 0.96994 * 120.00540 * 179.97438 * 7 6 4 31 31 H 1.07993 * 120.00032 * 0.03678 * 16 15 14 32 32 H 1.08007 * 119.99765 * 179.78523 * 17 16 15 33 33 H 1.08002 * 119.99732 * 180.25559 * 18 17 16 34 34 H 1.07998 * 119.99720 * 179.97438 * 19 18 17 35 35 H 1.08001 * 119.99600 * 179.97438 * 20 19 18 36 36 H 1.09009 * 117.49907 * 214.97219 * 21 14 12 37 37 H 1.08997 * 117.50259 * 359.97438 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2491 2.0267 -1.1873 5 1 2.7439 2.9866 -1.1927 6 6 1.8463 1.4459 -2.3836 7 7 1.0797 0.3787 -2.3705 8 14 2.3943 2.1823 -4.0105 9 1 3.6766 1.5609 -4.4281 10 1 1.3596 1.9246 -5.0440 11 1 2.5822 3.6469 -3.8526 12 6 2.2408 2.0172 1.1672 13 8 2.5388 3.1930 1.1700 14 6 2.1194 1.2677 2.4689 15 6 2.9499 0.0149 2.5775 16 6 2.5025 -1.0470 3.3412 17 6 3.2669 -2.1941 3.4450 18 6 4.4738 -2.2833 2.7769 19 6 4.9190 -1.2232 2.0096 20 6 4.1570 -0.0742 1.9097 21 6 1.9128 2.0908 3.7420 22 6 0.7560 1.2737 3.1631 23 1 0.4595 0.3714 3.6980 24 35 -0.7033 2.2595 2.2890 25 1 -0.3633 0.4962 -0.8999 26 1 -0.3634 -1.0274 0.0203 27 1 -0.3634 0.5314 0.8797 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 0.7981 -0.0266 -3.2055 31 1 1.5576 -0.9790 3.8596 32 1 2.9190 -3.0224 4.0445 33 1 5.0689 -3.1812 2.8548 34 1 5.8621 -1.2928 1.4880 35 1 4.5051 0.7541 1.3105 36 1 2.3776 1.7261 4.6581 37 1 1.8651 3.1747 3.6383 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001583183224.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:44 Heat of formation + Delta-G solvation = 50.136815 kcal Electronic energy + Delta-G solvation = -22247.912051 eV Core-core repulsion = 19038.643472 eV Total energy + Delta-G solvation = -3209.268578 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 337.042 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.16491 -38.06533 -36.20874 -34.85185 -31.68042 -30.77879 -30.60127 -29.48467 -29.05202 -25.65780 -23.57432 -22.61516 -22.15726 -21.45289 -20.90297 -18.42281 -17.25331 -16.72097 -15.89218 -14.99571 -14.94167 -14.45356 -14.26585 -14.08526 -13.60000 -13.20156 -12.93204 -12.81357 -12.52286 -12.17071 -11.81187 -11.54906 -11.33847 -11.25936 -11.01151 -10.87501 -10.82635 -10.64920 -10.40891 -10.26217 -10.04327 -9.81361 -9.43908 -9.08499 -8.70400 -8.59076 -8.39103 -8.17329 -7.62857 -6.17395 -3.76640 1.50535 1.62710 1.97214 3.14068 3.26224 3.31445 3.47194 3.91614 4.07840 4.21613 4.62818 4.72737 4.94184 5.02862 5.15599 5.25166 5.25935 5.40911 5.47670 5.65780 5.76523 5.82943 6.01121 6.13377 6.22839 6.30097 6.48033 6.65307 6.73613 6.84983 6.90653 6.95983 7.06282 7.19576 7.48702 7.65880 7.96475 8.13596 8.58697 9.21870 9.50119 10.03466 10.71806 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.010276 B = 0.007686 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2724.149651 B = 3642.278557 C = 5310.520142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.115 3.885 3 N -0.420 5.420 4 C -0.292 4.292 5 H 0.102 0.898 6 C 0.025 3.975 7 N -0.870 5.870 8 Si 0.927 3.073 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.271 1.271 12 C 0.474 3.526 13 O -0.585 6.585 14 C -0.077 4.077 15 C -0.027 4.027 16 C -0.124 4.124 17 C -0.119 4.119 18 C -0.128 4.128 19 C -0.114 4.114 20 C -0.096 4.096 21 C -0.121 4.121 22 C -0.112 4.112 23 H 0.138 0.862 24 Br -0.095 7.095 25 H 0.087 0.913 26 H 0.025 0.975 27 H 0.043 0.957 28 H 0.108 0.892 29 H 0.036 0.964 30 H 0.264 0.736 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.108 0.892 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.179 -5.598 11.214 12.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.008 4.008 3 N -0.135 5.135 4 C -0.420 4.420 5 H 0.120 0.880 6 C -0.177 4.177 7 N -0.511 5.511 8 Si 0.754 3.246 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.195 1.195 12 C 0.261 3.739 13 O -0.471 6.471 14 C -0.082 4.082 15 C -0.028 4.028 16 C -0.142 4.142 17 C -0.137 4.137 18 C -0.146 4.146 19 C -0.132 4.132 20 C -0.114 4.114 21 C -0.160 4.160 22 C -0.209 4.209 23 H 0.155 0.845 24 Br -0.013 7.013 25 H 0.106 0.894 26 H 0.044 0.956 27 H 0.062 0.938 28 H 0.125 0.875 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.144 0.856 36 H 0.126 0.874 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.293 -4.809 10.708 11.742 hybrid contribution 0.285 -0.252 -0.734 0.827 sum -0.008 -5.061 9.974 11.185 Atomic orbital electron populations 1.22479 0.96702 0.99189 1.03386 1.21795 0.94868 0.83114 1.01002 1.43613 1.54206 1.11783 1.03943 1.19798 1.35145 1.04931 0.82127 0.88020 1.25258 0.96050 0.96816 0.99547 1.70152 1.32980 1.21220 1.26759 0.85906 0.78136 0.79462 0.81102 1.20507 1.21000 1.19526 1.18365 0.86131 0.86541 0.82894 1.90517 1.54933 1.15500 1.86120 1.20574 0.95227 0.96562 0.95818 1.18814 0.94215 0.92977 0.96801 1.20945 0.99805 0.93440 1.00049 1.20994 0.95034 0.97520 1.00117 1.21078 0.96747 0.98600 0.98196 1.21103 0.99870 0.93386 0.98834 1.21066 0.93847 0.98404 0.98080 1.23348 0.96885 1.00161 0.95562 1.25710 0.87786 1.02339 1.05019 0.84497 1.97304 1.47128 1.75445 1.81405 0.89424 0.95594 0.93833 0.87458 0.94561 0.92526 0.86284 0.86290 0.86414 0.86093 0.85621 0.87373 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 9.63 37.16 0.36 -3.20 16 2 C 0.12 2.65 4.95 -4.04 -0.02 2.63 16 3 N -0.42 -10.48 2.60 -114.82 -0.30 -10.78 16 4 C -0.29 -7.95 9.51 -14.93 -0.14 -8.10 16 5 H 0.10 2.93 7.25 -52.49 -0.38 2.54 16 6 C 0.02 0.64 5.26 -17.47 -0.09 0.55 16 7 N -0.87 -22.20 7.59 55.50 0.42 -21.77 16 8 Si 0.93 20.62 29.56 -169.99 -5.03 15.59 16 9 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 12 C 0.47 11.32 4.72 -10.99 -0.05 11.27 16 13 O -0.59 -15.95 16.08 5.55 0.09 -15.86 16 14 C -0.08 -1.44 1.67 -156.82 -0.26 -1.70 16 15 C -0.03 -0.46 3.07 -104.62 -0.32 -0.78 16 16 C -0.12 -1.75 9.15 -39.58 -0.36 -2.11 16 17 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 18 C -0.13 -1.62 10.05 -39.58 -0.40 -2.02 16 19 C -0.11 -1.64 10.05 -39.58 -0.40 -2.04 16 20 C -0.10 -1.66 8.74 -39.58 -0.35 -2.00 16 21 C -0.12 -1.93 9.54 -26.73 -0.26 -2.19 16 22 C -0.11 -1.82 5.88 -26.73 -0.16 -1.98 16 23 H 0.14 1.84 6.09 -51.93 -0.32 1.53 16 24 Br -0.10 -1.76 29.98 -68.01 -2.04 -3.79 16 25 H 0.09 2.22 6.15 -51.93 -0.32 1.90 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.04 0.91 3.89 -51.93 -0.20 0.70 16 28 H 0.11 2.71 5.77 -51.93 -0.30 2.41 16 29 H 0.04 0.77 4.15 -51.93 -0.22 0.55 16 30 H 0.26 6.45 8.31 -40.82 -0.34 6.11 16 31 H 0.12 1.45 5.94 -52.49 -0.31 1.13 16 32 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 33 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.13 2.44 7.36 -52.49 -0.39 2.06 16 36 H 0.11 1.38 8.14 -51.92 -0.42 0.95 16 37 H 0.12 2.07 7.82 -51.93 -0.41 1.66 16 LS Contribution 312.57 15.07 4.71 4.71 Total: -1.00 -29.47 312.57 -9.07 -38.54 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -4.09 Total: 6.92 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -2.84 Total: -13.55 kcal Atomic # 7 Polarization: -32.68 SS G_CDS: 0.12 Total: -32.56 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: 0.09 Total: -15.86 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Atomic # 35 Polarization: -1.76 SS G_CDS: -2.04 Total: -3.79 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.47 -9.07 -38.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583183224.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.674 kcal (2) G-P(sol) polarization free energy of solvation -29.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds