Wall clock time and date at job start Tue Mar 31 2020 19:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47116 * 2 1 4 4 C 1.37097 * 120.00069 * 269.88417 * 3 2 1 5 5 H 1.07998 * 119.99855 * 189.01683 * 4 3 2 6 6 C 1.38948 * 120.00142 * 9.01768 * 4 3 2 7 7 N 1.31412 * 119.99973 * 9.72652 * 6 4 3 8 8 Si 1.86800 * 120.00186 * 189.71987 * 6 4 3 9 9 H 1.48493 * 109.46929 * 90.00250 * 8 6 4 10 10 H 1.48502 * 109.47045 * 210.00078 * 8 6 4 11 11 H 1.48499 * 109.47249 * 330.00219 * 8 6 4 12 12 C 1.34777 * 119.99797 * 89.89159 * 3 2 1 13 13 O 1.21291 * 119.99867 * 186.06668 * 12 3 2 14 14 C 1.50700 * 120.00249 * 6.06119 * 12 3 2 15 15 C 1.50696 * 115.54808 * 54.41964 * 14 12 3 16 16 C 1.38244 * 119.99998 * 211.00205 * 15 14 12 17 17 C 1.38235 * 119.99561 * 180.25624 * 16 15 14 18 18 C 1.38232 * 120.00505 * 359.50897 * 17 16 15 19 19 C 1.38236 * 119.99907 * 0.27518 * 18 17 16 20 20 C 1.38234 * 119.99738 * 359.95836 * 19 18 17 21 21 C 1.52995 * 117.51850 * 200.11771 * 14 12 3 22 22 C 1.52998 * 117.50011 * 268.75011 * 14 12 3 23 23 H 1.09003 * 117.49865 * 144.97503 * 22 14 12 24 24 Br 1.96596 * 117.49796 * 359.97128 * 22 14 12 25 25 H 1.09001 * 109.47133 * 61.12766 * 1 2 3 26 26 H 1.08996 * 109.47556 * 181.13165 * 1 2 3 27 27 H 1.09007 * 109.47108 * 301.13300 * 1 2 3 28 28 H 1.08997 * 109.47096 * 240.00152 * 2 1 3 29 29 H 1.08998 * 109.47393 * 120.00137 * 2 1 3 30 30 H 0.96994 * 120.00540 * 179.97438 * 7 6 4 31 31 H 1.07993 * 120.00032 * 0.03678 * 16 15 14 32 32 H 1.08007 * 119.99765 * 179.78523 * 17 16 15 33 33 H 1.08002 * 119.99732 * 180.25559 * 18 17 16 34 34 H 1.07998 * 119.99720 * 179.97438 * 19 18 17 35 35 H 1.08001 * 119.99600 * 179.97438 * 20 19 18 36 36 H 1.09009 * 117.49907 * 214.97219 * 21 14 12 37 37 H 1.08997 * 117.50259 * 359.97438 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2491 2.0267 -1.1873 5 1 2.7439 2.9866 -1.1927 6 6 1.8463 1.4459 -2.3836 7 7 1.0797 0.3787 -2.3705 8 14 2.3943 2.1823 -4.0105 9 1 3.6766 1.5609 -4.4281 10 1 1.3596 1.9246 -5.0440 11 1 2.5822 3.6469 -3.8526 12 6 2.2408 2.0172 1.1672 13 8 2.5388 3.1930 1.1700 14 6 2.1194 1.2677 2.4689 15 6 2.9499 0.0149 2.5775 16 6 2.5025 -1.0470 3.3412 17 6 3.2669 -2.1941 3.4450 18 6 4.4738 -2.2833 2.7769 19 6 4.9190 -1.2232 2.0096 20 6 4.1570 -0.0742 1.9097 21 6 1.9128 2.0908 3.7420 22 6 0.7560 1.2737 3.1631 23 1 0.4595 0.3714 3.6980 24 35 -0.7033 2.2595 2.2890 25 1 -0.3633 0.4962 -0.8999 26 1 -0.3634 -1.0274 0.0203 27 1 -0.3634 0.5314 0.8797 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 0.7981 -0.0266 -3.2055 31 1 1.5576 -0.9790 3.8596 32 1 2.9190 -3.0224 4.0445 33 1 5.0689 -3.1812 2.8548 34 1 5.8621 -1.2928 1.4880 35 1 4.5051 0.7541 1.3105 36 1 2.3776 1.7261 4.6581 37 1 1.8651 3.1747 3.6383 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001583183224.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:43 Heat of formation + Delta-G solvation = 34.773673 kcal Electronic energy + Delta-G solvation = -22248.578246 eV Core-core repulsion = 19038.643472 eV Total energy + Delta-G solvation = -3209.934774 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 337.042 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.60876 -39.52087 -37.73768 -36.73268 -33.61746 -32.00883 -31.71785 -31.19685 -30.51730 -27.48761 -25.10277 -23.86976 -23.77614 -22.79703 -22.29240 -20.03203 -18.75717 -18.49459 -17.43865 -16.69737 -16.22825 -15.95101 -15.63110 -15.57231 -15.21459 -14.72990 -14.59791 -14.20848 -13.84295 -13.61463 -13.52602 -13.34303 -12.81782 -12.77007 -12.63960 -12.45028 -12.23712 -12.11039 -12.01246 -11.89501 -11.69861 -11.59808 -10.86672 -10.84924 -10.40477 -10.03683 -9.78973 -9.65381 -9.36940 -8.15282 -5.82624 0.39643 0.53753 0.63601 1.34386 1.39993 1.51022 1.87334 2.26046 2.49648 2.93290 3.03867 3.17670 3.35579 3.71560 3.84177 3.84800 4.12290 4.20379 4.31642 4.39745 4.63361 4.68516 4.71671 4.78502 4.91105 5.08253 5.10797 5.13780 5.18365 5.25887 5.44899 5.59947 5.65858 5.70258 5.71673 6.07029 6.13147 6.14421 6.61560 7.23049 7.58503 8.12176 8.70996 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.010276 B = 0.007686 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2724.149651 B = 3642.278557 C = 5310.520142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.125 3.875 3 N -0.429 5.429 4 C -0.332 4.332 5 H 0.070 0.930 6 C -0.002 4.002 7 N -0.873 5.873 8 Si 0.984 3.016 9 H -0.270 1.270 10 H -0.273 1.273 11 H -0.281 1.281 12 C 0.472 3.528 13 O -0.634 6.634 14 C -0.097 4.097 15 C -0.044 4.044 16 C -0.122 4.122 17 C -0.109 4.109 18 C -0.121 4.121 19 C -0.121 4.121 20 C -0.127 4.127 21 C -0.108 4.108 22 C -0.095 4.095 23 H 0.179 0.821 24 Br -0.123 7.123 25 H 0.055 0.945 26 H 0.045 0.955 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.268 0.732 31 H 0.145 0.855 32 H 0.159 0.841 33 H 0.152 0.848 34 H 0.132 0.868 35 H 0.084 0.916 36 H 0.150 0.850 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.091 -8.700 13.149 15.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.002 3.998 3 N -0.144 5.144 4 C -0.461 4.461 5 H 0.088 0.912 6 C -0.204 4.204 7 N -0.513 5.513 8 Si 0.808 3.192 9 H -0.195 1.195 10 H -0.198 1.198 11 H -0.206 1.206 12 C 0.260 3.740 13 O -0.523 6.523 14 C -0.102 4.102 15 C -0.045 4.045 16 C -0.140 4.140 17 C -0.126 4.126 18 C -0.139 4.139 19 C -0.139 4.139 20 C -0.145 4.145 21 C -0.146 4.146 22 C -0.191 4.191 23 H 0.196 0.804 24 Br -0.041 7.041 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.163 0.837 32 H 0.176 0.824 33 H 0.170 0.830 34 H 0.149 0.851 35 H 0.102 0.898 36 H 0.168 0.832 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.575 -7.947 12.645 14.946 hybrid contribution 0.439 0.681 -1.298 1.530 sum -0.137 -7.266 11.347 13.475 Atomic orbital electron populations 1.22380 0.96120 1.00127 1.02409 1.21695 0.95155 0.82062 1.00871 1.43717 1.54524 1.12410 1.03797 1.19648 1.37373 1.04861 0.84176 0.91186 1.25871 0.95651 0.97168 1.01663 1.70263 1.32253 1.21193 1.27558 0.85076 0.78282 0.78097 0.77725 1.19518 1.19764 1.20622 1.19168 0.84109 0.86277 0.84406 1.90466 1.56561 1.17923 1.87301 1.20352 0.97898 0.98079 0.93850 1.18727 0.93945 0.93146 0.98696 1.21207 1.00870 0.92709 0.99212 1.21473 0.94193 0.97756 0.99204 1.21494 0.97117 0.98728 0.96514 1.21293 1.00123 0.93062 0.99403 1.20913 0.95449 0.98671 0.99484 1.23485 0.96297 0.99019 0.95845 1.26004 0.86136 1.03334 1.03669 0.80411 1.97314 1.48256 1.76424 1.82071 0.92664 0.93649 0.92457 0.89964 0.92237 0.92132 0.83718 0.82356 0.83041 0.85050 0.89815 0.83227 0.88433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.73 9.63 71.98 0.69 -6.03 16 2 C 0.12 5.79 4.95 86.38 0.43 6.22 16 3 N -0.43 -22.35 2.60 -635.55 -1.65 -24.01 16 4 C -0.33 -19.16 9.51 84.04 0.80 -18.36 16 5 H 0.07 4.37 7.25 -2.91 -0.02 4.35 16 6 C 0.00 -0.12 5.26 84.93 0.45 0.33 16 7 N -0.87 -45.26 7.59 21.66 0.16 -45.09 16 8 Si 0.98 43.40 29.56 68.60 2.03 45.43 16 9 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 10 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 C 0.47 23.46 4.72 87.66 0.41 23.88 16 13 O -0.63 -36.77 16.08 -3.07 -0.05 -36.82 16 14 C -0.10 -3.59 1.67 -53.68 -0.09 -3.67 16 15 C -0.04 -1.43 3.07 -19.86 -0.06 -1.49 16 16 C -0.12 -2.90 9.15 22.27 0.20 -2.69 16 17 C -0.11 -2.12 10.05 22.27 0.22 -1.90 16 18 C -0.12 -2.53 10.05 22.27 0.22 -2.31 16 19 C -0.12 -3.30 10.05 22.27 0.22 -3.08 16 20 C -0.13 -4.42 8.74 22.27 0.19 -4.23 16 21 C -0.11 -3.28 9.54 30.59 0.29 -2.99 16 22 C -0.10 -2.90 5.88 30.59 0.18 -2.72 16 23 H 0.18 3.92 6.09 -2.39 -0.01 3.90 16 24 Br -0.12 -4.48 29.98 -20.37 -0.61 -5.09 16 25 H 0.05 2.82 6.15 -2.39 -0.01 2.80 16 26 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.06 2.35 3.89 -2.38 -0.01 2.34 16 28 H 0.08 4.23 5.77 -2.39 -0.01 4.22 16 29 H 0.06 2.48 4.15 -2.39 -0.01 2.47 16 30 H 0.27 13.13 8.31 -92.71 -0.77 12.36 16 31 H 0.15 2.63 5.94 -2.91 -0.02 2.61 16 32 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 33 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 34 H 0.13 3.15 8.06 -2.91 -0.02 3.13 16 35 H 0.08 3.54 7.36 -2.91 -0.02 3.52 16 36 H 0.15 3.26 8.14 -2.38 -0.02 3.24 16 37 H 0.10 3.41 7.82 -2.39 -0.02 3.39 16 Total: -1.00 -69.22 312.57 5.15 -64.07 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 1.10 Total: 20.55 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: 4.17 Total: -19.05 kcal Atomic # 7 Polarization: -67.61 SS G_CDS: -1.49 Total: -69.10 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -0.05 Total: -36.82 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 35 Polarization: -4.48 SS G_CDS: -0.61 Total: -5.09 kcal Total: -69.22 5.15 -64.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583183224.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.843 kcal (2) G-P(sol) polarization free energy of solvation -69.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds