Wall clock time and date at job start Tue Mar 31 2020 20:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99569 * 2 1 4 4 H 1.48504 * 109.47161 * 240.00281 * 3 2 1 5 5 H 1.48494 * 109.47409 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47151 * 120.00683 * 3 2 1 7 7 C 1.37876 * 120.00335 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00184 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99689 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.46840 * 180.02562 * 9 7 2 11 11 C 1.34780 * 120.00082 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99695 * 359.97438 * 11 10 9 13 13 C 1.50701 * 120.00202 * 179.97438 * 11 10 9 14 14 O 1.45194 * 109.47220 * 179.97438 * 13 11 10 15 15 C 1.34812 * 117.00251 * 179.97438 * 14 13 11 16 16 O 1.21580 * 119.99823 * 0.02562 * 15 14 13 17 17 C 1.46904 * 120.00056 * 180.02562 * 15 14 13 18 18 C 1.35857 * 123.47260 * 5.93573 * 17 15 14 19 19 S 1.70376 * 111.11486 * 179.72496 * 18 17 15 20 20 C 1.75477 * 92.61245 * 0.36207 * 19 18 17 21 21 C 1.33967 * 110.50561 * 359.63908 * 20 19 18 22 22 C 1.48312 * 123.64968 * 180.23176 * 21 20 19 23 23 N 1.34094 * 126.68728 * 174.24079 * 22 21 20 24 24 N 1.28982 * 107.26511 * 179.97438 * 23 22 21 25 25 N 1.28720 * 108.95974 * 359.97438 * 24 23 22 26 26 H 0.97000 * 125.33399 * 180.02562 * 25 24 23 27 27 N 1.28868 * 109.33400 * 359.72544 * 25 24 23 28 28 H 0.96996 * 120.00195 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47098 * 60.00096 * 9 7 2 30 30 H 1.09000 * 109.46740 * 300.00047 * 9 7 2 31 31 H 0.97001 * 120.00136 * 359.97438 * 10 9 7 32 32 H 1.09004 * 109.46693 * 59.99736 * 13 11 10 33 33 H 1.09004 * 109.46775 * 300.00136 * 13 11 10 34 34 H 1.08000 * 124.44186 * 0.02562 * 18 17 15 35 35 H 1.08001 * 124.74420 * 179.89874 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6965 1.2124 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7540 -4.8833 0.0000 12 8 0.5616 -5.1050 0.0009 13 6 2.7333 -6.0288 -0.0006 14 8 2.0074 -7.2862 0.0007 15 6 2.7417 -8.4168 -0.0001 16 8 3.9558 -8.3532 -0.0015 17 6 2.0748 -9.7258 0.0006 18 6 0.7301 -9.8817 -0.1151 19 16 0.2985 -11.5296 -0.0846 20 6 1.9655 -12.0455 0.1000 21 6 2.7847 -10.9858 0.1251 22 6 4.2576 -11.0888 0.2655 23 7 5.1417 -10.0834 0.1906 24 7 6.3144 -10.5910 0.3665 25 7 6.1980 -11.8602 0.5468 26 1 6.9325 -12.4745 0.7018 27 7 4.9522 -12.1859 0.4956 28 1 -0.4850 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8902 30 1 0.6248 -2.5570 0.8897 31 1 3.1569 -3.4353 -0.0009 32 1 3.3607 -5.9708 0.8889 33 1 3.3593 -5.9711 -0.8911 34 1 0.0275 -9.0680 -0.2182 35 1 2.2865 -13.0738 0.1780 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592677598.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:23 Heat of formation + Delta-G solvation = 61.614592 kcal Electronic energy + Delta-G solvation = -25030.851244 eV Core-core repulsion = 20967.304179 eV Total energy + Delta-G solvation = -4063.547065 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.068 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.53905 -40.40901 -38.77232 -37.74606 -35.97643 -34.32075 -34.20136 -33.31730 -32.37663 -30.49282 -28.99497 -26.78518 -26.10041 -24.51669 -23.99261 -22.58775 -21.57861 -20.05994 -19.87794 -18.98416 -17.97671 -17.61095 -17.27121 -17.18013 -16.43691 -16.31084 -15.60318 -15.14658 -14.84188 -14.59868 -14.16849 -14.07545 -13.62874 -13.37641 -13.31113 -13.00839 -12.68515 -12.46808 -12.18493 -11.95624 -11.70827 -11.67788 -11.44113 -11.19045 -11.14847 -11.00711 -10.87784 -10.51467 -10.32374 -10.01817 -9.43009 -9.33020 -9.12203 -8.82849 -8.75165 -7.94970 -6.17310 -4.24546 0.26630 0.71999 0.97998 1.24849 1.36077 2.07520 2.32691 2.50387 3.07025 3.24395 3.26318 3.30992 3.32587 3.52134 4.00310 4.09080 4.35853 4.49856 4.90040 4.95621 5.04264 5.18780 5.25758 5.27414 5.35658 5.41100 5.42380 5.56663 5.68515 6.20102 6.49210 7.25829 7.35278 7.48700 7.63198 7.88380 7.94690 8.09481 8.54248 8.74206 9.00592 9.41733 10.92794 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.018229 B = 0.002231 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.616228 B =12547.702215 C =14053.634263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.252 3.748 10 N -0.707 5.707 11 C 0.501 3.499 12 O -0.537 6.537 13 C 0.053 3.947 14 O -0.330 6.330 15 C 0.502 3.498 16 O -0.450 6.450 17 C -0.119 4.119 18 C -0.180 4.180 19 S 0.242 5.758 20 C -0.204 4.204 21 C 0.016 3.984 22 C 0.219 3.781 23 N -0.192 5.192 24 N -0.064 5.064 25 N -0.235 5.235 26 H 0.472 0.528 27 N -0.296 5.296 28 H 0.267 0.733 29 H 0.029 0.971 30 H 0.029 0.971 31 H 0.393 0.607 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.193 0.807 35 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.243 -29.477 0.475 30.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.132 3.868 10 N -0.357 5.357 11 C 0.284 3.716 12 O -0.414 6.414 13 C -0.024 4.024 14 O -0.246 6.246 15 C 0.342 3.658 16 O -0.333 6.333 17 C -0.134 4.134 18 C -0.318 4.318 19 S 0.509 5.491 20 C -0.343 4.343 21 C 0.002 3.998 22 C -0.062 4.062 23 N -0.067 5.067 24 N -0.060 5.060 25 N -0.079 5.079 26 H 0.325 0.675 27 N -0.149 5.149 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.226 0.774 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.210 0.790 35 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 5.775 -29.919 0.391 30.473 hybrid contribution 2.446 1.362 0.209 2.808 sum 8.222 -28.556 0.600 29.722 Atomic orbital electron populations 1.69964 1.06107 1.27487 1.48707 1.24950 0.94933 0.99467 0.94634 0.86452 0.79393 0.82196 0.78737 1.20026 1.21073 1.20037 1.21182 0.93317 0.90331 1.53492 0.91804 1.19158 0.88169 0.81547 0.97976 1.46359 1.11521 1.05370 1.72465 1.19918 0.89125 0.84000 0.78591 1.90690 1.16390 1.84616 1.49731 1.22816 0.94255 0.80687 1.04680 1.86578 1.40016 1.13700 1.84286 1.20403 0.86119 0.84215 0.75088 1.91131 1.12807 1.86694 1.42714 1.18995 0.92065 0.90656 1.11707 1.25964 0.99204 1.04051 1.02539 1.83203 1.04120 0.95448 1.66301 1.25671 0.97000 1.03041 1.08577 1.16669 0.86470 0.91306 1.05371 1.22920 0.95214 0.85237 1.02880 1.77169 0.92936 1.22427 1.14138 1.79155 1.20737 0.92075 1.14071 1.47782 1.06499 1.08048 1.45589 0.67476 1.74830 0.91540 1.26456 1.22039 0.92345 0.95282 0.95297 0.77393 0.88498 0.88440 0.79001 0.80067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.95 13.29 55.43 0.74 -25.22 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.91 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.54 -14.70 9.28 -34.44 -0.32 -15.02 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.62 5.43 -5.19 -0.03 6.59 16 10 N -0.71 -14.81 5.55 -61.47 -0.34 -15.15 16 11 C 0.50 10.14 7.91 -10.98 -0.09 10.06 16 12 O -0.54 -13.06 16.50 -14.10 -0.23 -13.30 16 13 C 0.05 0.84 5.96 36.01 0.21 1.05 16 14 O -0.33 -5.38 9.41 -47.48 -0.45 -5.83 16 15 C 0.50 7.55 7.90 34.24 0.27 7.82 16 16 O -0.45 -7.44 12.28 -19.33 -0.24 -7.68 16 17 C -0.12 -1.45 5.99 -104.50 -0.63 -2.07 16 18 C -0.18 -1.72 10.52 29.88 0.31 -1.40 16 19 S 0.24 1.51 23.01 -107.50 -2.47 -0.96 16 20 C -0.20 -1.53 10.91 29.23 0.32 -1.21 16 21 C 0.02 0.18 5.99 -104.51 -0.63 -0.45 16 22 C 0.22 2.70 7.95 -156.27 -1.24 1.46 16 23 N -0.19 -2.78 8.32 32.14 0.27 -2.51 16 24 N -0.06 -0.76 13.47 60.35 0.81 0.06 16 25 N -0.23 -1.86 7.90 60.35 0.48 -1.38 16 26 H 0.47 1.28 8.96 -340.37 -3.05 -1.77 16 27 N -0.30 -2.89 12.32 32.15 0.40 -2.49 16 28 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.39 6.97 8.32 -40.82 -0.34 6.63 16 32 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.19 1.79 8.01 -52.49 -0.42 1.37 16 35 H 0.18 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 338.01 15.07 5.09 5.09 Total: -1.00 -36.76 338.01 -8.33 -45.09 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -5.46 Total: -0.03 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: -1.91 Total: 8.51 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: 2.35 Total: -46.69 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.92 Total: -26.81 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.47 Total: -0.96 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -36.76 -8.33 -45.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592677598.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.706 kcal (2) G-P(sol) polarization free energy of solvation -36.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds