Wall clock time and date at job start Tue Mar 31 2020 20:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99569 * 2 1 4 4 H 1.48504 * 109.47161 * 240.00281 * 3 2 1 5 5 H 1.48494 * 109.47409 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47151 * 120.00683 * 3 2 1 7 7 C 1.37876 * 120.00335 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00184 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99689 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.46840 * 180.02562 * 9 7 2 11 11 C 1.34780 * 120.00082 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99695 * 359.97438 * 11 10 9 13 13 C 1.50701 * 120.00202 * 179.97438 * 11 10 9 14 14 O 1.45194 * 109.47220 * 179.97438 * 13 11 10 15 15 C 1.34812 * 117.00251 * 179.97438 * 14 13 11 16 16 O 1.21580 * 119.99823 * 0.02562 * 15 14 13 17 17 C 1.46904 * 120.00056 * 180.02562 * 15 14 13 18 18 C 1.35857 * 123.47260 * 5.93573 * 17 15 14 19 19 S 1.70376 * 111.11486 * 179.72496 * 18 17 15 20 20 C 1.75477 * 92.61245 * 0.36207 * 19 18 17 21 21 C 1.33967 * 110.50561 * 359.63908 * 20 19 18 22 22 C 1.48312 * 123.64968 * 180.23176 * 21 20 19 23 23 N 1.34094 * 126.68728 * 174.24079 * 22 21 20 24 24 N 1.28982 * 107.26511 * 179.97438 * 23 22 21 25 25 N 1.28720 * 108.95974 * 359.97438 * 24 23 22 26 26 H 0.97000 * 125.33399 * 180.02562 * 25 24 23 27 27 N 1.28868 * 109.33400 * 359.72544 * 25 24 23 28 28 H 0.96996 * 120.00195 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47098 * 60.00096 * 9 7 2 30 30 H 1.09000 * 109.46740 * 300.00047 * 9 7 2 31 31 H 0.97001 * 120.00136 * 359.97438 * 10 9 7 32 32 H 1.09004 * 109.46693 * 59.99736 * 13 11 10 33 33 H 1.09004 * 109.46775 * 300.00136 * 13 11 10 34 34 H 1.08000 * 124.44186 * 0.02562 * 18 17 15 35 35 H 1.08001 * 124.74420 * 179.89874 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6965 1.2124 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7540 -4.8833 0.0000 12 8 0.5616 -5.1050 0.0009 13 6 2.7333 -6.0288 -0.0006 14 8 2.0074 -7.2862 0.0007 15 6 2.7417 -8.4168 -0.0001 16 8 3.9558 -8.3532 -0.0015 17 6 2.0748 -9.7258 0.0006 18 6 0.7301 -9.8817 -0.1151 19 16 0.2985 -11.5296 -0.0846 20 6 1.9655 -12.0455 0.1000 21 6 2.7847 -10.9858 0.1251 22 6 4.2576 -11.0888 0.2655 23 7 5.1417 -10.0834 0.1906 24 7 6.3144 -10.5910 0.3665 25 7 6.1980 -11.8602 0.5468 26 1 6.9325 -12.4745 0.7018 27 7 4.9522 -12.1859 0.4956 28 1 -0.4850 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8902 30 1 0.6248 -2.5570 0.8897 31 1 3.1569 -3.4353 -0.0009 32 1 3.3607 -5.9708 0.8889 33 1 3.3593 -5.9711 -0.8911 34 1 0.0275 -9.0680 -0.2182 35 1 2.2865 -13.0738 0.1780 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592677598.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:23 Heat of formation + Delta-G solvation = 34.014172 kcal Electronic energy + Delta-G solvation = -25032.048088 eV Core-core repulsion = 20967.304179 eV Total energy + Delta-G solvation = -4064.743909 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.068 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.32973 -41.57524 -40.36874 -38.65860 -37.16419 -36.15889 -35.13639 -34.40311 -34.10421 -31.40007 -30.47346 -28.50840 -26.97238 -25.40531 -24.99407 -24.39553 -22.54373 -21.60816 -20.87893 -19.92621 -19.09007 -18.62206 -18.51170 -18.07151 -17.68368 -17.62908 -17.19385 -16.85338 -16.17251 -16.13134 -15.55740 -14.97999 -14.71395 -14.63221 -14.11962 -14.07319 -14.05646 -13.93374 -13.69275 -13.48983 -13.02116 -12.94515 -12.67854 -12.43060 -12.26921 -12.23568 -11.97100 -11.90841 -11.76009 -11.51728 -11.10052 -10.85606 -10.79801 -10.02259 -9.91288 -9.44512 -8.28709 -6.45200 -0.42652 -0.09071 0.37996 0.41193 0.69400 1.31025 1.41320 1.45091 1.48232 1.51857 1.56646 1.57467 2.13377 2.35474 2.61944 2.77811 3.06236 3.27401 3.70717 3.79931 3.90539 4.10860 4.12484 4.18225 4.39709 4.50595 4.65855 4.80611 4.97039 5.08723 5.23205 5.35709 5.43317 5.64575 5.69830 5.82970 6.63291 6.72856 6.83561 7.21196 7.27652 7.36654 8.83173 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.018229 B = 0.002231 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.616228 B =12547.702215 C =14053.634263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.984 3.016 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.558 4.558 8 H 0.085 0.915 9 C 0.267 3.733 10 N -0.700 5.700 11 C 0.502 3.498 12 O -0.582 6.582 13 C 0.065 3.935 14 O -0.347 6.347 15 C 0.499 3.501 16 O -0.469 6.469 17 C -0.150 4.150 18 C -0.192 4.192 19 S 0.340 5.660 20 C -0.190 4.190 21 C -0.013 4.013 22 C 0.207 3.793 23 N -0.239 5.239 24 N -0.080 5.080 25 N -0.205 5.205 26 H 0.492 0.508 27 N -0.285 5.285 28 H 0.269 0.731 29 H -0.007 1.007 30 H -0.007 1.007 31 H 0.412 0.588 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.188 0.812 35 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.428 -31.336 0.534 32.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.596 4.596 8 H 0.103 0.897 9 C 0.145 3.855 10 N -0.351 5.351 11 C 0.288 3.712 12 O -0.462 6.462 13 C -0.012 4.012 14 O -0.263 6.263 15 C 0.341 3.659 16 O -0.354 6.354 17 C -0.166 4.166 18 C -0.330 4.330 19 S 0.607 5.393 20 C -0.330 4.330 21 C -0.027 4.027 22 C -0.075 4.075 23 N -0.112 5.112 24 N -0.076 5.076 25 N -0.055 5.055 26 H 0.350 0.650 27 N -0.139 5.139 28 H 0.078 0.922 29 H 0.011 0.989 30 H 0.011 0.989 31 H 0.248 0.752 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.206 0.794 35 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 7.030 -31.818 0.452 32.588 hybrid contribution 1.976 1.712 0.198 2.621 sum 9.005 -30.106 0.650 31.431 Atomic orbital electron populations 1.70124 1.08186 1.28678 1.49794 1.26043 0.95790 1.03815 0.93835 0.85211 0.77910 0.76658 0.79468 1.18709 1.21067 1.18739 1.21582 0.94392 0.90461 1.53137 0.89719 1.18622 0.88542 0.83721 0.94610 1.46050 1.11718 1.04752 1.72588 1.20643 0.89262 0.84628 0.76695 1.90663 1.18764 1.85307 1.51479 1.22645 0.92559 0.79182 1.06791 1.86573 1.40847 1.14151 1.84763 1.20950 0.86122 0.84541 0.74327 1.91125 1.13521 1.86866 1.43903 1.18974 0.93084 0.89694 1.14839 1.26134 0.98406 1.06760 1.01712 1.82939 1.01820 0.91486 1.63014 1.26085 0.97678 1.03487 1.05712 1.16732 0.86324 0.91628 1.08008 1.23233 0.95944 0.85255 1.03082 1.77116 0.93907 1.24118 1.16045 1.79066 1.20265 0.93330 1.14975 1.47834 1.06817 1.07566 1.43247 0.64978 1.74791 0.91801 1.25533 1.21783 0.92188 0.98885 0.98932 0.75197 0.86320 0.86155 0.79427 0.77466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.88 13.29 21.45 0.28 -55.60 16 2 C 0.01 0.28 5.46 84.65 0.46 0.74 16 3 Si 0.98 42.38 29.54 68.60 2.03 44.40 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 5 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 7 C -0.56 -30.30 9.28 25.60 0.24 -30.06 16 8 H 0.08 4.14 7.60 -2.91 -0.02 4.12 16 9 C 0.27 14.65 5.43 85.64 0.46 15.12 16 10 N -0.70 -29.83 5.55 -466.78 -2.59 -32.42 16 11 C 0.50 20.84 7.91 87.66 0.69 21.54 16 12 O -0.58 -29.57 16.50 15.76 0.26 -29.31 16 13 C 0.07 2.06 5.96 71.24 0.42 2.48 16 14 O -0.35 -11.56 9.41 -50.85 -0.48 -12.04 16 15 C 0.50 15.34 7.90 70.09 0.55 15.89 16 16 O -0.47 -15.86 12.28 19.57 0.24 -15.62 16 17 C -0.15 -3.63 5.99 -19.78 -0.12 -3.75 16 18 C -0.19 -3.49 10.52 67.27 0.71 -2.78 16 19 S 0.34 3.20 23.01 -56.49 -1.30 1.90 16 20 C -0.19 -2.33 10.91 66.85 0.73 -1.60 16 21 C -0.01 -0.28 5.99 -19.79 -0.12 -0.40 16 22 C 0.21 4.96 7.95 137.30 1.09 6.05 16 23 N -0.24 -6.95 8.32 -52.24 -0.43 -7.39 16 24 N -0.08 -1.87 13.47 37.02 0.50 -1.37 16 25 N -0.20 -2.98 7.90 37.02 0.29 -2.69 16 26 H 0.49 1.81 8.96 -347.54 -3.12 -1.31 16 27 N -0.29 -5.14 12.32 -52.18 -0.64 -5.78 16 28 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 29 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 30 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 31 H 0.41 14.37 8.32 -92.71 -0.77 13.60 16 32 H 0.12 3.25 8.14 -2.38 -0.02 3.23 16 33 H 0.12 3.27 8.14 -2.38 -0.02 3.25 16 34 H 0.19 3.50 8.01 -2.91 -0.02 3.48 16 35 H 0.21 1.35 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -83.65 338.01 0.60 -83.05 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -2.68 Total: 9.64 kcal Atomic # 6 Polarization: 18.10 SS G_CDS: 5.13 Total: 23.23 kcal Atomic # 7 Polarization: -102.66 SS G_CDS: -2.59 Total: -105.25 kcal Atomic # 8 Polarization: -56.99 SS G_CDS: 0.02 Total: -56.97 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -1.30 Total: 1.90 kcal Total: -83.65 0.60 -83.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592677598.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.060 kcal (2) G-P(sol) polarization free energy of solvation -83.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds